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JQ086369.1__AFH20718.1__HK106_030__00030
Bact-VirJQ086369.1__AFH20718.1__HK106_030__00030
Identity
- Accession:
- JQ086369 ↗
- Kingdom:
- phage
Quality
83.0
mean pLDDT
Taxonomy
TaxID: 432198
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-29
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ijjB00 | 1.20.120.910 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain | 0.61 | 45.0 | 2.96e-01 | 79.3% | 83.1% |
| 3b08E00 | 2.30.30.380 | Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 | 0.59 | 44.0 | 3.80e-01 | 96.6% | 50.8% |
| 2pf2A00 | 2.40.20.10 | Mainly Beta › Beta Barrel › Plasminogen Kringle 4 › Plasminogen Kringle 4 | 0.52 | 33.0 | 2.44e-01 | 100.0% | 45.5% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5003882 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.77 | 59.0 | 3.98e-01 | 100.0% | 22.4% |
| 5059675 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.77 | 59.0 | 3.76e-01 | 100.0% | 17.2% |
| 4958515 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.77 | 59.0 | 3.89e-01 | 100.0% | 20.0% |
| 5040991 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.77 | 58.0 | 3.64e-01 | 100.0% | 15.1% |
| 5035746 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.77 | 60.0 | 3.89e-01 | 100.0% | 18.7% |
| 5030541 | 4294.1.1.0 ↗ | few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like | 0.74 | 58.0 | 5.30e-01 | 89.7% | 85.0% |
| 4940588 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.74 | 57.0 | 3.81e-01 | 100.0% | 21.1% |
| 4985268 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.73 | 54.0 | 3.63e-01 | 100.0% | 20.0% |
| 4942077 | 2.1.1.42 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C | 0.73 | 56.0 | 3.67e-01 | 100.0% | 40.0% |
| 5001822 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.72 | 54.0 | 3.64e-01 | 100.0% | 20.0% |
| 5028108 | 375.1.1.33 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Spt4 | 0.71 | 52.0 | 4.45e-01 | 96.6% | 46.7% |
| 4932520 | 375.1.1.33 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Spt4 | 0.68 | 50.0 | 4.27e-01 | 100.0% | 46.7% |
| 3550281 | 376.1.1.66 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_16 | 0.67 | 51.0 | 4.07e-01 | 100.0% | 61.3% |
| 5054553 | 7528.1.1.1 ↗ | a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › PGM_PMM_I | 0.64 | 43.0 | 2.82e-01 | 96.6% | 14.7% |
| 3390943 | 376.1.1.66 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_16 | 0.61 | 43.0 | 3.49e-01 | 100.0% | 54.8% |
| 4571246 | 375.1.1.204 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PolC_DP2_central | 0.60 | 44.0 | 3.40e-01 | 100.0% | 31.6% |
| 4087125 | 375.1.1.204 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PolC_DP2_central | 0.60 | 41.0 | 3.63e-01 | 82.8% | 40.0% |
| 8150 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.58 | 44.0 | 4.38e-01 | 86.2% | 87.1% |
| 4939650 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.57 | 44.0 | 2.59e-01 | 100.0% | 19.5% |
| 4616587 | 101.1.2.29 ↗ | alpha arrays › HTH › HTH › winged helix domain › PTS_2-RNA | 0.57 | 39.0 | 2.92e-01 | 93.1% | 23.6% |
| 8219 | 377.9.1.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-MYND | 0.53 | 36.0 | 3.43e-01 | 86.2% | 72.3% |
| 8182 | 377.1.1.5 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM | 0.52 | 40.0 | 3.86e-01 | 86.2% | 77.1% |