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JQ177062.1__AFC22537.1__phi1422_0017__00017

Bact-Vir

JQ177062.1__AFC22537.1__phi1422_0017__00017

Identity

Accession:
JQ177062 ↗
Kingdom:
phage

Quality

79.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-73
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3sd2A01 2.60.40.3080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.70 45.0 4.45e-01 91.7% 61.0%
2q0zX03 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.70 50.0 4.24e-01 95.8% 47.0%
3im1A03 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.69 50.0 4.27e-01 95.8% 47.8%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.67 56.0 4.26e-01 97.2% 54.3%
6n44A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.64 55.0 4.44e-01 95.8% 71.2%
3klqA01 2.60.40.3050 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 42.0 3.57e-01 93.1% 42.9%
2wy3B00 2.60.40.1990 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 52.0 4.24e-01 95.8% 83.2%
4mz2A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 51.0 4.43e-01 93.1% 65.8%
3no8A00 2.60.120.820 Mainly Beta › Sandwich › Jelly Rolls › PHR domain 0.59 44.0 3.38e-01 91.7% 35.7%
2hevF00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.59 38.0 3.19e-01 91.7% 37.3%
1s7hA02 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 46.0 4.51e-01 87.5% 87.8%
2wnvD00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.58 42.0 3.44e-01 91.7% 41.4%
7rskA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 48.0 4.15e-01 97.2% 58.7%
1kshB00 2.70.50.40 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › GMP phosphodiesterase, delta subunit 0.58 42.0 3.45e-01 98.6% 39.4%
2petA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 49.0 4.26e-01 95.8% 61.7%
1uaiA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 49.0 3.57e-01 100.0% 43.0%
2fblB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.58 51.0 4.05e-01 100.0% 52.7%
3bqjA01 2.40.510.10 Mainly Beta › Beta Barrel › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Positive stranded ssRNA viruses 0.57 41.0 3.11e-01 97.2% 28.7%
5m59A06 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.57 45.0 3.91e-01 94.4% 55.4%
1vk8A00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 48.0 4.48e-01 97.2% 95.7%
2vifA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.57 45.0 3.84e-01 88.9% 61.1%
2iboA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 48.0 4.48e-01 95.8% 97.8%
1h30A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 46.0 3.47e-01 97.2% 76.4%
8alzB04 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.56 45.0 3.91e-01 95.8% 57.3%
1lxjA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 47.0 4.21e-01 95.8% 87.4%
1cidA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 45.0 4.04e-01 93.1% 67.0%
2erfA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 45.0 3.37e-01 94.4% 54.1%
6khuA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.55 47.0 3.90e-01 95.8% 78.5%
5dcaA08 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.55 44.0 3.86e-01 95.8% 57.3%
2pn1A03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.55 42.0 3.61e-01 83.3% 90.0%
3dfeA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 48.0 4.62e-01 98.6% 98.8%
1pmhX00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 47.0 3.51e-01 95.8% 60.7%
5d4nC00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 48.0 4.39e-01 100.0% 92.9%
3egrA00 3.10.20.520 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B 0.54 39.0 4.06e-01 93.1% 88.9%
1go4A00 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.54 48.0 3.46e-01 97.2% 40.8%
3tviA02 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.54 46.0 3.66e-01 100.0% 54.1%
4fk5A02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.54 45.0 3.00e-01 95.8% 88.6%
3lnlB02 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 46.0 4.39e-01 100.0% 98.9%
4hwxA00 3.30.350.10 Alpha Beta › 2-Layer Sandwich › Subtilisin Inhibitor › Subtilisin inhibitor-like 0.53 45.0 3.85e-01 91.7% 69.3%
4p25D01 2.40.510.10 Mainly Beta › Beta Barrel › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Positive stranded ssRNA viruses 0.53 38.0 2.92e-01 97.2% 28.9%
2zw2A00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.53 45.0 4.29e-01 94.4% 98.8%
1s7hA01 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 41.0 4.02e-01 87.5% 88.7%
6v93E01 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.51 45.0 3.30e-01 97.2% 37.4%
2basA03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 43.0 3.64e-01 90.3% 76.7%
3eipA00 3.10.50.20 Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein 0.51 44.0 4.22e-01 97.2% 98.8%
3j7yD01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 32.0 2.91e-01 98.6% 44.3%
1hxnA00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.51 43.0 3.20e-01 100.0% 81.9%
2qycA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 42.0 3.86e-01 100.0% 100.0%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3209905 5.1.12.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › PERK and Ire1 luminal domains 0.75 45.0 2.88e-01 97.2% 13.3%
2157238 5.1.12.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › PERK and Ire1 luminal domains › PQQ_2 0.72 43.0 3.34e-01 98.6% 28.4%
3505139 5.1.12.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › PERK and Ire1 luminal domains 0.72 47.0 3.08e-01 98.6% 16.6%
3261455 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.71 52.0 4.16e-01 97.2% 40.7%
143706 11.1.1.146 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF3244 0.70 45.0 4.28e-01 91.7% 54.7%
3490262 11.1.4.72 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › NOMO1-like_2nd 0.69 42.0 3.88e-01 90.3% 48.9%
3704683 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.68 59.0 4.61e-01 95.8% 74.2%
1721544 11.1.1.45 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Sec63 0.68 50.0 4.22e-01 95.8% 47.8%
3412169 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.68 53.0 4.64e-01 98.6% 56.2%
3193560 11.1.1.45 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Sec63 0.68 50.0 4.34e-01 95.8% 50.9%
3560478 11.1.1.45 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Sec63 0.68 50.0 3.71e-01 95.8% 31.1%
3501396 11.1.1.45 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Sec63 0.68 50.0 4.48e-01 95.8% 56.0%
3180702 11.1.1.45 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Sec63 0.68 50.0 3.94e-01 95.8% 38.6%
4949258 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.67 48.0 4.50e-01 93.1% 61.4%
5012588 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.67 41.0 4.01e-01 91.7% 55.0%
4936239 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.67 45.0 4.11e-01 95.8% 52.6%
5032716 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.67 58.0 4.24e-01 97.2% 57.9%
3231010 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.65 56.0 4.35e-01 94.4% 67.7%
3994647 11.1.7.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › PEBP-like 0.65 49.0 3.43e-01 95.8% 25.8%
3588235 11.1.4.36 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › SpaA 0.65 41.0 3.70e-01 90.3% 46.0%
3937632 859.1.1.0 a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 0.64 57.0 4.28e-01 98.6% 52.6%
3762030 219.1.1.14 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Josephin 0.64 53.0 4.44e-01 91.7% 55.2%
139979 5084.2.1.1 beta barrels › Outer membrane meander beta-barrels › OMPT-like › OMPT-like › Omptin 0.64 55.0 3.64e-01 94.4% 89.0%
3883938 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 54.0 4.70e-01 94.4% 62.7%
3888035 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 52.0 4.63e-01 90.3% 64.0%
3652837 4.2.1.4 beta barrels › SH3 › SAND › SAND › TDBD 0.62 48.0 4.46e-01 90.3% 66.7%
3387958 868.1.1.0 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.62 53.0 4.18e-01 100.0% 44.5%
3557603 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 42.0 4.04e-01 91.7% 60.0%
4265973 11.1.1.951 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › A2M, A2M_BRD, MG4 0.62 48.0 2.89e-01 94.4% 12.4%
3244743 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.62 46.0 3.65e-01 91.7% 38.7%
3892007 11.10.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.61 45.0 3.53e-01 98.6% 36.1%
5019500 11.1.1.1424 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7490 0.61 47.0 3.90e-01 97.2% 47.2%
5044402 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 51.0 4.30e-01 95.8% 56.5%
3517801 11.1.7.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › PEBP-like 0.60 44.0 3.16e-01 97.2% 25.3%
4012690 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 52.0 3.99e-01 95.8% 47.5%
5042719 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 49.0 4.14e-01 93.1% 55.7%
5057156 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 46.0 3.93e-01 94.4% 52.2%
3376270 4.2.1.4 beta barrels › SH3 › SAND › SAND › TDBD 0.59 44.0 4.40e-01 88.9% 78.7%
4467867 3784.1.1.0 a+b two layers › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related 0.59 50.0 3.95e-01 93.1% 60.7%
5080744 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.58 42.0 3.45e-01 79.2% 69.7%
1273080 868.1.1.1 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH 0.58 51.0 4.04e-01 100.0% 50.0%
3231167 633.23.1.35 alpha bundles › Bromodomain-like › Claudin › Claudin › Clarin-2 0.58 49.0 3.64e-01 98.6% 79.0%
3864744 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 48.0 4.11e-01 95.8% 58.3%
3455699 4.1.1.296 beta barrels › SH3 › SH3 › SH3 › TDBD 0.57 44.0 4.25e-01 91.7% 74.7%
4027275 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.57 45.0 3.55e-01 100.0% 40.6%
3214302 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 49.0 4.25e-01 98.6% 62.6%
3567571 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.56 46.0 3.63e-01 94.4% 52.1%
3496830 2492.1.1.1 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.54 45.0 3.44e-01 94.4% 60.0%
3914258 11.1.1.99 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.53 45.0 3.73e-01 94.4% 53.1%
3795670 633.23.1.35 alpha bundles › Bromodomain-like › Claudin › Claudin › Clarin-2 0.53 44.0 3.30e-01 100.0% 74.9%
5067408 219.1.1.97 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CEPT76_peptidase 0.53 44.0 3.41e-01 98.6% 76.6%
3896010 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.53 45.0 3.40e-01 98.6% 58.4%
3625149 708.1.1.4 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.53 36.0 3.48e-01 70.8% 100.0%
5039250 10.1.2.184 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PepX_C 0.52 47.0 3.52e-01 100.0% 70.3%
3593210 304.25.1.0 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain 0.52 43.0 3.80e-01 97.2% 98.3%
3450576 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 43.0 3.99e-01 94.4% 73.7%
3784545 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 43.0 3.50e-01 95.8% 53.8%
4174584 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.51 42.0 3.69e-01 97.2% 94.2%
3850704 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.51 42.0 2.81e-01 94.4% 79.0%
3902198 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.51 42.0 2.68e-01 94.4% 65.6%
4026065 221.1.1.177 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › SNAPC3 0.51 43.0 3.50e-01 100.0% 91.3%
3615139 859.1.1.1 a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › HORMA 0.50 37.0 2.65e-01 77.8% 61.0%