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JQ177062.1__AFC22553.1__phi1422_0033__00033

Bact-Vir

JQ177062.1__AFC22553.1__phi1422_0033__00033

Identity

Accession:
JQ177062 ↗
Kingdom:
phage

Quality

82.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-69
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.61 39.0 3.45e-01 100.0% 44.7%
1wh2A01 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.56 37.0 3.77e-01 82.8% 70.5%
3ekiA01 3.40.190.180 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Cypl, domain I 0.53 44.0 3.28e-01 95.3% 51.7%
3fmaA00 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.53 39.0 3.64e-01 82.8% 63.0%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.53 36.0 3.44e-01 71.9% 65.8%
7ahbB01 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.52 40.0 4.19e-01 96.9% 91.5%
4bwsF00 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.51 35.0 3.48e-01 84.4% 70.1%
3ftbA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 46.0 3.78e-01 100.0% 80.4%
2rbkA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.51 38.0 3.30e-01 81.2% 62.4%
1w23A02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 46.0 3.89e-01 100.0% 91.3%
3ng7X01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 41.0 3.01e-01 100.0% 96.8%
1nf2A02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.50 35.0 3.04e-01 73.4% 48.1%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3581478 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.80 35.0 3.68e-01 93.8% 45.0%
3692430 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.77 37.0 3.57e-01 93.8% 41.4%
3392796 386.1.1.25 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-H2C2_5 0.77 37.0 3.34e-01 95.3% 36.1%
3564128 386.1.1.1 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.76 36.0 2.99e-01 93.8% 26.4%
3974708 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 44.0 3.53e-01 75.0% 31.2%
3281602 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.63 34.0 3.87e-01 96.9% 70.8%
3787008 822.1.1.1 a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.57 38.0 3.82e-01 81.2% 67.2%
4931929 821.1.1.14 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF2797 0.54 49.0 4.33e-01 98.4% 91.1%
3217685 822.1.1.0 a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain 0.54 36.0 3.69e-01 84.4% 75.9%
4873862 866.1.1.1 a+b duplicates or obligate multimers › CheC-like › CheC-like › CheC-like › FliM 0.53 41.0 3.22e-01 85.9% 61.3%
3621341 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.53 37.0 3.61e-01 76.6% 100.0%
4334666 7523.1.1.18 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › CypI 0.52 43.0 3.21e-01 93.8% 52.0%
3231381 5001.1.1.33 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srh 0.52 41.0 2.67e-01 90.6% 66.6%
4151900 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.51 39.0 3.14e-01 89.1% 60.4%
D2 high residues 71-143
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2pp6A02 2.40.10.210 Mainly Beta › Beta Barrel › Thrombin, subunit H › Phage tail proteins (gpFII-like) 0.73 46.0 4.92e-01 100.0% 74.6%
2w1jA00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.70 62.0 4.57e-01 100.0% 79.5%
3wndA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.68 47.0 4.32e-01 72.6% 67.0%
2d37A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.65 55.0 4.31e-01 93.2% 78.7%
2ey4D00 2.40.10.230 Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain 0.65 45.0 4.48e-01 80.8% 69.3%
4f07E00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 54.0 4.31e-01 93.2% 79.9%
1uscA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 53.0 4.05e-01 93.2% 70.2%
3nfwA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 53.0 4.04e-01 93.2% 68.2%
4tkoB01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.64 50.0 4.65e-01 84.9% 68.5%
2aneH00 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.64 47.0 4.21e-01 80.8% 72.5%
4ci2B02 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.64 49.0 4.16e-01 84.9% 60.8%
1rz1A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.63 52.0 4.17e-01 93.2% 78.9%
2dpyA00 3.40.50.12240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.63 42.0 2.64e-01 80.8% 12.1%
2ecuA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 52.0 4.15e-01 93.2% 76.5%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 31.0 3.34e-01 100.0% 55.7%
4xhyA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 51.0 4.04e-01 93.2% 75.2%
3cb0D00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 50.0 3.99e-01 93.2% 80.1%
1xqbA01 2.40.30.70 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › YaeB-like 0.61 49.0 4.31e-01 87.7% 70.6%
3bnkA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 51.0 3.87e-01 94.5% 68.3%
6hhuA01 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 41.0 4.08e-01 80.8% 67.9%
2ynaA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 45.0 4.30e-01 83.6% 92.0%
2qggA01 2.40.30.60 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM 0.59 44.0 4.06e-01 80.8% 62.4%
1ywuA00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.59 52.0 4.36e-01 98.6% 59.2%
6f2mA02 2.40.30.290 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.58 43.0 4.07e-01 84.9% 65.5%
4q63A00 2.40.10.430 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.58 48.0 4.53e-01 100.0% 74.2%
3wdhA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 42.0 3.86e-01 90.4% 59.4%
2rdeA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.57 50.0 4.42e-01 100.0% 72.1%
3b5mA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 50.0 4.32e-01 100.0% 91.6%
2de6A02 2.20.25.680 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.57 31.0 3.41e-01 87.7% 63.8%
3zn6A02 2.60.40.3410 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 44.0 4.18e-01 84.9% 78.2%
2f1lA01 2.40.30.60 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM 0.56 41.0 3.88e-01 80.8% 65.2%
1hpgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 40.0 3.68e-01 82.2% 77.8%
5tr9A01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 41.0 3.82e-01 86.3% 65.6%
2jheA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 38.0 3.42e-01 100.0% 52.8%
4i86A00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.53 46.0 4.18e-01 100.0% 71.6%
2kc5A01 3.30.1460.40 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › [NiFe]-hydrogenase assembly chaperone, HybE 0.52 42.0 3.50e-01 100.0% 49.3%
2oolA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 45.0 4.03e-01 98.6% 87.9%
2xzlA02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.52 37.0 3.68e-01 84.9% 72.2%
2eixA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 40.0 3.57e-01 84.9% 62.3%
3md7A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.52 44.0 3.07e-01 100.0% 61.5%
4p02A03 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.52 45.0 3.84e-01 100.0% 71.3%
2veaA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 45.0 3.73e-01 98.6% 69.2%
3zugB02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.51 38.0 3.19e-01 84.9% 53.5%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5001586 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.71 51.0 4.78e-01 79.5% 61.1%
5026244 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 52.0 4.82e-01 80.8% 63.3%
3801941 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.69 53.0 4.56e-01 82.2% 73.9%
3698630 1.1.8.4 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.69 48.0 4.19e-01 72.6% 62.9%
5036377 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 52.0 4.33e-01 84.9% 68.0%
3942928 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.65 54.0 5.14e-01 91.8% 96.5%
4932427 1.1.8.4 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.65 44.0 4.13e-01 71.2% 66.7%
5048423 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 50.0 4.37e-01 86.3% 88.7%
4995824 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 46.0 4.69e-01 84.9% 78.1%
1883205 1.1.13.19 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Caud_tail_N 0.63 49.0 4.28e-01 86.3% 56.4%
3224730 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 49.0 4.30e-01 84.9% 69.1%
4172447 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 45.0 4.49e-01 95.9% 76.0%
4946634 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 46.0 4.34e-01 84.9% 65.6%
3978877 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 41.0 3.89e-01 84.9% 58.9%
4267752 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.59 44.0 4.07e-01 79.5% 64.2%
3288253 1.1.13.55 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF4873 0.59 51.0 4.77e-01 95.9% 87.8%
5059044 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 45.0 4.19e-01 94.5% 65.3%
4438946 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.59 46.0 4.42e-01 84.9% 72.9%
3221539 1.1.5.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.59 46.0 3.14e-01 86.3% 29.7%
3951894 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.58 46.0 4.24e-01 84.9% 71.6%
3289340 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.58 45.0 4.39e-01 95.9% 76.2%
1213522 1.1.13.25 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DTP-pb9_B-dom 0.58 42.0 4.05e-01 86.3% 66.7%
4060133 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.57 43.0 4.06e-01 80.8% 67.8%
4055193 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.57 43.0 4.01e-01 80.8% 62.1%
3486271 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 37.0 3.45e-01 79.5% 53.3%
4682440 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.57 42.0 3.89e-01 80.8% 61.1%
3971891 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.57 50.0 3.38e-01 100.0% 39.0%
3963092 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.57 51.0 4.65e-01 100.0% 78.9%
4188663 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.57 42.0 3.92e-01 80.8% 62.1%
4098347 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 45.0 2.82e-01 94.5% 22.5%
4139867 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.55 47.0 4.39e-01 100.0% 84.2%
3984429 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.55 38.0 3.91e-01 100.0% 75.7%
4391995 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.54 40.0 3.83e-01 80.8% 68.2%
3800913 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.54 47.0 3.90e-01 100.0% 79.3%
4636051 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.54 40.0 3.61e-01 80.8% 67.6%
4553723 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.53 39.0 3.65e-01 80.8% 61.1%
3235404 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.53 44.0 3.05e-01 93.2% 52.1%
3251337 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 38.0 3.27e-01 90.4% 43.7%
3500542 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.53 34.0 3.21e-01 83.6% 53.3%
4395520 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.53 39.0 3.68e-01 84.9% 63.2%
4138546 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.53 40.0 3.79e-01 84.9% 67.8%
4083333 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.51 38.0 3.58e-01 84.9% 63.2%
3599398 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.51 42.0 3.80e-01 90.4% 70.0%
4988027 223.1.1.6 a+b three layers › Profilin-like › sensor domains › sensor domains › dCache_1 0.51 43.0 2.96e-01 98.6% 49.2%
4952899 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.51 38.0 3.71e-01 84.9% 73.8%
4074297 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.50 44.0 3.86e-01 100.0% 72.2%
4208972 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.50 38.0 3.48e-01 84.9% 61.0%