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JQ177062.1__AFC22560.1__phi1422_0040__00040
Bact-VirJQ177062.1__AFC22560.1__phi1422_0040__00040
Identity
- Accession:
- JQ177062 ↗
- Kingdom:
- phage
Quality
66.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 63-113
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2wteA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 56.0 | 4.99e-01 | 94.1% | 77.8% |
| 3sigA00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.63 | 45.0 | 2.87e-01 | 76.5% | 78.5% |
| 1tbxB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 50.0 | 4.20e-01 | 94.1% | 64.4% |
| 1g59A03 | 3.90.800.10 | Alpha Beta › Alpha-Beta Complex › Glutamyl-tRNA Synthetase; domain 3 › Glutamyl-tRNA Synthetase; Domain 3 | 0.60 | 44.0 | 3.45e-01 | 80.4% | 62.9% |
| 2o0jA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 44.0 | 2.88e-01 | 82.4% | 19.7% |
| 2lbtA00 | 3.30.1330.60 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain | 0.59 | 42.0 | 3.23e-01 | 76.5% | 87.8% |
| 3ilsA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.59 | 40.0 | 2.55e-01 | 70.6% | 26.4% |
| 4mb8D00 | 3.10.270.10 | Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; | 0.59 | 42.0 | 2.67e-01 | 78.4% | 87.2% |
| 1dpbA00 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.59 | 48.0 | 3.16e-01 | 94.1% | 76.5% |
| 5b08A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 47.0 | 3.88e-01 | 94.1% | 68.0% |
| 3j7aY00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 49.0 | 3.56e-01 | 96.1% | 84.4% |
| 3lmmA03 | 3.30.565.60 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › | 0.53 | 41.0 | 3.06e-01 | 96.1% | 90.1% |
| 2mc3A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 41.0 | 3.43e-01 | 92.2% | 68.0% |
| 2jugA01 | 1.10.10.1830 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Non-ribosomal peptide synthase, adenylation domain | 0.52 | 31.0 | 3.03e-01 | 72.5% | 54.5% |
| 3p0jA03 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.52 | 39.0 | 3.38e-01 | 92.2% | 89.5% |
| 2e1mA05 | 1.10.405.10 | Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › Guanine Nucleotide Dissociation Inhibitor, domain 1 | 0.51 | 43.0 | 3.63e-01 | 100.0% | 54.9% |
| 3djaA01 | 1.20.920.70 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › | 0.51 | 38.0 | 2.87e-01 | 84.3% | 50.3% |
| 1xu6A00 | 4.10.110.20 | Few Secondary Structures › Irregular › Spasmolytic Protein; domain 1 › Variant surface glycoprotein MITAT 1.2, VSG 221, C-terminal domain | 0.51 | 35.0 | 3.16e-01 | 92.2% | 48.8% |
| 3l60A01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.50 | 40.0 | 2.64e-01 | 86.3% | 63.6% |
| 5k5iA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.50 | 38.0 | 3.87e-01 | 92.2% | 82.7% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5046672 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 53.0 | 4.19e-01 | 94.1% | 57.4% |
| 3283935 | 633.6.1.0 ↗ | alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like | 0.65 | 48.0 | 3.40e-01 | 80.4% | 60.0% |
| 3428027 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.63 | 50.0 | 3.84e-01 | 94.1% | 51.9% |
| 4005246 | 101.1.2.60 ↗ | alpha arrays › HTH › HTH › winged helix domain › HA2_N | 0.63 | 51.0 | 4.80e-01 | 94.1% | 80.0% |
| 3975833 | 4156.1.1.2 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_N,HA2_C | 0.63 | 50.0 | 3.42e-01 | 94.1% | 29.5% |
| 3302118 | 327.16.1.16 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Myb_DNA-bind_3 | 0.61 | 44.0 | 4.09e-01 | 80.4% | 60.0% |
| 5020732 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 46.0 | 4.15e-01 | 84.3% | 70.0% |
| 3182508 | 4340.1.1.0 ↗ | a+b complex topology › TFB5-related › TFB5-related › TFB5-related | 0.59 | 46.0 | 4.56e-01 | 94.1% | 81.8% |
| 5049383 | 7584.1.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › AMP-binding | 0.59 | 45.0 | 3.14e-01 | 84.3% | 70.9% |
| 5052358 | 7584.1.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › AMP-binding | 0.59 | 45.0 | 3.05e-01 | 84.3% | 52.2% |
| 3933135 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.58 | 47.0 | 3.32e-01 | 92.2% | 82.3% |
| 4934857 | 101.1.2.927 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7347 | 0.58 | 46.0 | 4.04e-01 | 94.1% | 65.9% |
| 3741490 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.58 | 45.0 | 3.89e-01 | 88.2% | 78.8% |
| 3562584 | 226.1.1.1 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › BTB | 0.57 | 38.0 | 2.72e-01 | 70.6% | 28.1% |
| 4660335 | 327.16.1.10 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › PF29189 | 0.57 | 43.0 | 4.22e-01 | 90.2% | 78.2% |
| 4946238 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 47.0 | 3.09e-01 | 96.1% | 35.4% |
| 3357520 | 310.2.1.28 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › Myb_DNA-bind_3 | 0.57 | 41.0 | 3.57e-01 | 80.4% | 48.2% |
| 3987059 | 3512.1.1.2 ↗ | beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › YadA_stalk | 0.55 | 41.0 | 3.34e-01 | 80.4% | 46.2% |
| 3237702 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 43.0 | 3.75e-01 | 90.2% | 58.8% |
| 3272707 | 327.11.2.39 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_PARP14_3 | 0.55 | 43.0 | 4.10e-01 | 94.1% | 72.3% |
| 3975095 | 327.16.1.10 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › PF29189 | 0.54 | 41.0 | 4.02e-01 | 94.1% | 75.0% |
| 4028911 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.53 | 44.0 | 3.34e-01 | 94.1% | 63.8% |
| 3410018 | 603.1.1.104 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › 7tm_7 | 0.53 | 44.0 | 2.73e-01 | 100.0% | 43.7% |
| 3519854 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 40.0 | 2.36e-01 | 82.4% | 12.8% |
| 3297063 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 42.0 | 3.32e-01 | 86.3% | 54.0% |
| 4407103 | 327.16.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system | 0.52 | 41.0 | 3.94e-01 | 94.1% | 81.7% |
| 3392962 | 7514.1.1.3 ↗ | a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_6 | 0.51 | 37.0 | 2.51e-01 | 78.4% | 74.1% |