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JQ177062.1__AFC22567.1__phi1422_0047__00047
Bact-VirJQ177062.1__AFC22567.1__phi1422_0047__00047
Identity
- Accession:
- JQ177062 ↗
- Kingdom:
- phage
Quality
90.3
mean pLDDT
Cluster
View cluster (42 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 43-113
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bjoA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 46.0 | 4.17e-01 | 85.9% | 75.7% |
| 3cjnA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 49.0 | 4.03e-01 | 98.6% | 63.7% |
| 2mc3A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 46.0 | 4.22e-01 | 94.4% | 90.3% |
| 6az6A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 40.0 | 3.95e-01 | 76.1% | 90.7% |
| 4tv7D01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 42.0 | 4.00e-01 | 81.7% | 94.1% |
| 1fnnB03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 43.0 | 3.92e-01 | 87.3% | 84.5% |
| 1s12A00 | 3.30.70.1490 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp | 0.56 | 38.0 | 3.60e-01 | 73.2% | 76.6% |
| 2iewB00 | 3.30.470.160 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Inositol polyphosphate kinase | 0.56 | 38.0 | 2.69e-01 | 71.8% | 76.2% |
| 2doaA00 | 1.10.10.2670 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › E3 ubiquitin-protein ligase | 0.56 | 47.0 | 4.22e-01 | 98.6% | 76.9% |
| 5w3gA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 43.0 | 3.87e-01 | 88.7% | 91.8% |
| 3o2pE00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 39.0 | 3.73e-01 | 74.6% | 82.6% |
| 4nogA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.55 | 39.0 | 3.06e-01 | 76.1% | 44.4% |
| 2isyA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 46.0 | 3.83e-01 | 98.6% | 92.8% |
| 4nhxA01 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.55 | 38.0 | 2.79e-01 | 100.0% | 24.3% |
| 3u21A00 | 1.10.10.2430 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NFRKB winged helix-like domain | 0.54 | 42.0 | 3.74e-01 | 88.7% | 87.2% |
| 1yreC00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.54 | 42.0 | 3.18e-01 | 85.9% | 86.3% |
| 1w5sA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 40.0 | 3.68e-01 | 85.9% | 84.5% |
| 2a61B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 43.0 | 3.62e-01 | 95.8% | 65.0% |
| 2q7eA02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.53 | 36.0 | 2.69e-01 | 71.8% | 82.1% |
| 5choF00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 33.0 | 2.63e-01 | 90.1% | 28.7% |
| 6qv3A05 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 39.0 | 3.65e-01 | 83.1% | 100.0% |
| 3bwgB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 35.0 | 3.61e-01 | 71.8% | 94.2% |
| 3nx3A01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.51 | 36.0 | 2.99e-01 | 76.1% | 49.6% |
| 2e9hA01 | 3.30.30.170 | Alpha Beta › 2-Layer Sandwich › Defensin A-like › | 0.51 | 42.0 | 3.74e-01 | 97.2% | 74.3% |
ECOD (54)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5081376 | 3696.1.1.0 ↗ | a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related | 0.74 | 52.0 | 5.32e-01 | 73.2% | 95.7% |
| 4997049 | 3696.1.1.0 ↗ | a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related | 0.68 | 51.0 | 5.15e-01 | 78.9% | 87.1% |
| 5010613 | 3696.1.1.0 ↗ | a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related | 0.68 | 48.0 | 5.03e-01 | 74.6% | 96.9% |
| 4325854 | 242.4.1.2 ↗ | a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain › PolC_DP2_central | 0.68 | 55.0 | 4.87e-01 | 93.0% | 62.7% |
| 5055051 | 242.4.1.2 ↗ | a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain › PolC_DP2_central | 0.67 | 55.0 | 4.89e-01 | 91.5% | 63.8% |
| 4930161 | 242.4.1.2 ↗ | a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain › PolC_DP2_central | 0.67 | 55.0 | 4.76e-01 | 91.5% | 60.9% |
| 4590367 | 242.4.1.2 ↗ | a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain › PolC_DP2_central | 0.66 | 54.0 | 4.77e-01 | 93.0% | 60.9% |
| 4968640 | 242.4.1.0 ↗ | a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain | 0.66 | 54.0 | 4.77e-01 | 93.0% | 63.6% |
| 5063534 | 242.4.1.2 ↗ | a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain › PolC_DP2_central | 0.66 | 55.0 | 4.58e-01 | 93.0% | 56.8% |
| 5068166 | 242.4.1.2 ↗ | a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain › PolC_DP2_central | 0.65 | 54.0 | 4.25e-01 | 93.0% | 45.2% |
| 5081203 | 242.4.1.2 ↗ | a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain › PolC_DP2_central | 0.65 | 54.0 | 4.33e-01 | 93.0% | 46.9% |
| 4666956 | 242.4.1.0 ↗ | a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain | 0.65 | 52.0 | 4.70e-01 | 93.0% | 63.8% |
| 4354139 | 242.4.1.2 ↗ | a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain › PolC_DP2_central | 0.65 | 52.0 | 4.70e-01 | 93.0% | 63.8% |
| 4982880 | 242.4.1.0 ↗ | a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain | 0.64 | 51.0 | 3.88e-01 | 88.7% | 36.5% |
| 5036184 | 242.4.1.2 ↗ | a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain › PolC_DP2_central | 0.63 | 51.0 | 4.60e-01 | 90.1% | 64.0% |
| 4956736 | 242.4.1.2 ↗ | a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain › PolC_DP2_central | 0.63 | 50.0 | 4.55e-01 | 91.5% | 65.3% |
| 4934504 | 242.2.1.2 ↗ | a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › tRNA_int_endo_N | 0.62 | 46.0 | 4.69e-01 | 81.7% | 85.7% |
| 4933147 | 242.4.1.2 ↗ | a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain › PolC_DP2_central | 0.62 | 50.0 | 4.42e-01 | 90.1% | 65.7% |
| 3298062 | 101.1.2.7 ↗ | alpha arrays › HTH › HTH › winged helix domain › HSF_DNA-bind | 0.61 | 45.0 | 4.08e-01 | 80.3% | 89.0% |
| 5033301 | 242.2.1.2 ↗ | a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › tRNA_int_endo_N | 0.60 | 48.0 | 4.78e-01 | 93.0% | 84.0% |
| 3611653 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 47.0 | 4.09e-01 | 87.3% | 66.1% |
| 4932499 | 242.2.1.2 ↗ | a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › tRNA_int_endo_N | 0.60 | 48.0 | 4.85e-01 | 91.5% | 90.0% |
| 3602718 | 101.1.2.209 ↗ | alpha arrays › HTH › HTH › winged helix domain › MJ1010-like_2nd | 0.60 | 46.0 | 4.39e-01 | 85.9% | 76.5% |
| 3405537 | 320.4.1.3 ↗ | a+b two layers › R3H domain-like › PUB domain › PUB domain › PUB | 0.60 | 46.0 | 3.95e-01 | 85.9% | 86.7% |
| 3603016 | 101.1.2.209 ↗ | alpha arrays › HTH › HTH › winged helix domain › MJ1010-like_2nd | 0.60 | 45.0 | 4.03e-01 | 85.9% | 60.9% |
| 3700475 | 320.4.1.0 ↗ | a+b two layers › R3H domain-like › PUB domain › PUB domain | 0.59 | 46.0 | 4.15e-01 | 87.3% | 70.5% |
| 4977810 | 3696.1.1.0 ↗ | a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related | 0.59 | 49.0 | 4.87e-01 | 100.0% | 86.7% |
| 3652603 | 101.1.2.516 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF25895 | 0.59 | 48.0 | 4.24e-01 | 94.4% | 99.1% |
| 3603159 | 101.1.2.209 ↗ | alpha arrays › HTH › HTH › winged helix domain › MJ1010-like_2nd | 0.58 | 46.0 | 4.63e-01 | 90.1% | 94.3% |
| 5061575 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 45.0 | 4.12e-01 | 88.7% | 90.0% |
| 4090346 | 101.1.2.209 ↗ | alpha arrays › HTH › HTH › winged helix domain › MJ1010-like_2nd | 0.58 | 43.0 | 4.59e-01 | 90.1% | 98.3% |
| 3884555 | 101.1.2.122 ↗ | alpha arrays › HTH › HTH › winged helix domain › CSN8_PSD8_EIF3K | 0.56 | 41.0 | 3.80e-01 | 77.5% | 67.8% |
| 4030126 | 101.1.2.18 ↗ | alpha arrays › HTH › HTH › winged helix domain › Ribosomal_S19e | 0.56 | 44.0 | 3.48e-01 | 88.7% | 78.1% |
| 1166576 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.56 | 43.0 | 3.87e-01 | 87.3% | 82.2% |
| 4021281 | 101.1.2.359 ↗ | alpha arrays › HTH › HTH › winged helix domain › GPIID_WHD | 0.55 | 44.0 | 3.85e-01 | 93.0% | 79.2% |
| 3676416 | 320.4.1.3 ↗ | a+b two layers › R3H domain-like › PUB domain › PUB domain › PUB | 0.55 | 45.0 | 3.84e-01 | 91.5% | 70.0% |
| 5063705 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.55 | 43.0 | 3.38e-01 | 88.7% | 69.7% |
| 2594483 | 320.4.1.5 ↗ | a+b two layers › R3H domain-like › PUB domain › PUB domain › Gasdermin_C | 0.55 | 43.0 | 3.17e-01 | 88.7% | 82.7% |
| 5040941 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 41.0 | 3.79e-01 | 85.9% | 95.0% |
| 3874897 | 320.4.1.5 ↗ | a+b two layers › R3H domain-like › PUB domain › PUB domain › Gasdermin_C | 0.54 | 45.0 | 3.40e-01 | 97.2% | 85.1% |
| 1843714 | 320.4.1.5 ↗ | a+b two layers › R3H domain-like › PUB domain › PUB domain › Gasdermin_C | 0.54 | 44.0 | 3.42e-01 | 98.6% | 84.7% |
| 3970023 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 40.0 | 3.89e-01 | 84.5% | 83.7% |
| 4024926 | 2006.1.3.11 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › TOP6A-Spo11_Toprim | 0.53 | 35.0 | 2.81e-01 | 70.4% | 63.1% |
| 4933236 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 40.0 | 3.62e-01 | 88.7% | 74.5% |
| 4294741 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.52 | 38.0 | 3.45e-01 | 80.3% | 81.0% |
| 3706719 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 41.0 | 3.66e-01 | 93.0% | 65.2% |
| None | — | 0.52 | 41.0 | 3.70e-01 | 93.0% | 93.6% | |
| 4879387 | 101.1.2.66 ↗ | alpha arrays › HTH › HTH › winged helix domain › Mga | 0.52 | 42.0 | 4.09e-01 | 94.4% | 97.6% |
| 4974520 | 205.1.1.19 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_13 | 0.51 | 34.0 | 3.59e-01 | 70.4% | 93.7% |
| None | — | 0.51 | 42.0 | 3.75e-01 | 94.4% | 96.2% | |
| 4175050 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.51 | 37.0 | 3.33e-01 | 80.3% | 76.4% |
| None | — | 0.51 | 43.0 | 2.96e-01 | 97.2% | 60.0% | |
| 3814918 | 205.1.1.0 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin | 0.51 | 35.0 | 3.06e-01 | 73.2% | 80.9% |
| 4488195 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.50 | 36.0 | 3.55e-01 | 78.9% | 75.0% |
D2
medium
residues 1-42_196-255
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3rmiA00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.76 | 42.0 | 4.19e-01 | 87.3% | 52.4% |
| 4ioeA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.72 | 49.0 | 5.24e-01 | 81.4% | 80.5% |
| 3fblA00 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.72 | 33.0 | 3.68e-01 | 76.5% | 53.7% |
| 2ap3A00 | 1.20.120.570 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YkyA-like | 0.70 | 49.0 | 3.87e-01 | 82.4% | 38.0% |
| 3ezhA00 | 1.20.120.960 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Histidine kinase NarX, sensor domain | 0.67 | 49.0 | 4.79e-01 | 77.5% | 96.5% |
| 1fpoC02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.66 | 37.0 | 3.98e-01 | 72.5% | 62.6% |
| 2om6A02 | 1.10.150.400 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.66 | 32.0 | 3.62e-01 | 75.5% | 58.2% |
| 6xj1A01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.64 | 52.0 | 3.88e-01 | 86.3% | 64.1% |
| 3ok8A00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.64 | 52.0 | 3.97e-01 | 85.3% | 84.5% |
| 5kbwB00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.64 | 43.0 | 3.63e-01 | 90.2% | 40.9% |
| 4m70I00 | 1.20.5.4130 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.62 | 46.0 | 4.54e-01 | 83.3% | 72.2% |
| 2uuzB00 | 1.10.10.2020 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Host-nuclease inhibitor protein Gam | 0.61 | 46.0 | 4.98e-01 | 85.3% | 95.3% |
| 2i0mA02 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.59 | 41.0 | 4.19e-01 | 85.3% | 72.3% |
| 1q0gA00 | 1.20.120.400 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nickel-containing superoxide dismutase | 0.59 | 38.0 | 3.61e-01 | 83.3% | 56.4% |
| 3c8tA01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.59 | 33.0 | 3.39e-01 | 71.6% | 56.7% |
| 4dxwA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.58 | 48.0 | 4.65e-01 | 87.3% | 95.5% |
| 2w02B01 | 1.10.150.640 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle | 0.56 | 39.0 | 4.51e-01 | 77.5% | 100.0% |
| 2icwG01 | 1.20.120.390 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hla class ii histocompatibility antigen, dr alpha chain. Chain D, domain 1 | 0.54 | 43.0 | 4.06e-01 | 84.3% | 100.0% |
| 3rvyA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.53 | 41.0 | 4.10e-01 | 83.3% | 94.4% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4024219 | 3871.1.1.1 ↗ | alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN | 0.77 | 53.0 | 4.56e-01 | 71.6% | 95.0% |
| 4024699 | 3871.1.1.1 ↗ | alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN | 0.74 | 51.0 | 4.54e-01 | 71.6% | 97.2% |
| 3246273 | 310.2.1.1 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF | 0.73 | 52.0 | 4.11e-01 | 82.4% | 38.5% |
| 3610184 | 375.1.9.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase | 0.72 | 37.0 | 3.53e-01 | 73.5% | 42.5% |
| 4948961 | 164.1.1.1 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 | 0.70 | 36.0 | 3.98e-01 | 90.2% | 58.8% |
| 4026473 | 3871.1.1.1 ↗ | alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN | 0.70 | 50.0 | 4.30e-01 | 73.5% | 93.1% |
| 3279434 | 106.1.1.11 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › RsbRD_N | 0.70 | 49.0 | 4.14e-01 | 89.2% | 42.9% |
| 4948274 | 164.1.1.1 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 | 0.70 | 35.0 | 4.07e-01 | 97.1% | 66.7% |
| 3398929 | 5041.1.1.32 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › TMEM141 | 0.69 | 53.0 | 5.65e-01 | 96.1% | 92.2% |
| 3559718 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.69 | 40.0 | 3.91e-01 | 85.3% | 52.7% |
| 4296658 | 164.1.1.1 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 | 0.69 | 43.0 | 4.39e-01 | 82.4% | 65.3% |
| 3598977 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.68 | 49.0 | 5.30e-01 | 94.1% | 89.4% |
| 4972733 | 611.2.1.0 ↗ | alpha bundles › N-cbl like › N-terminal domain of cbl (N-cbl) › N-terminal domain of cbl (N-cbl) | 0.68 | 42.0 | 4.17e-01 | 79.4% | 58.7% |
| 3235389 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.66 | 51.0 | 4.37e-01 | 84.3% | 53.5% |
| 4033222 | 604.39.1.6 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › QueT | 0.66 | 38.0 | 3.35e-01 | 71.6% | 38.7% |
| 4026128 | 3871.1.1.1 ↗ | alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN | 0.64 | 50.0 | 4.35e-01 | 86.3% | 56.0% |
| 5007177 | 1075.1.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane | 0.63 | 47.0 | 3.56e-01 | 89.2% | 32.9% |
| 3291106 | 191.1.1.1 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_1 | 0.63 | 40.0 | 3.78e-01 | 71.6% | 52.8% |
| 4964044 | 5058.1.1.16 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 | 0.63 | 52.0 | 5.29e-01 | 90.2% | 92.0% |
| 5028289 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.62 | 47.0 | 3.30e-01 | 79.4% | 27.1% |
| 4959229 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.62 | 45.0 | 3.64e-01 | 75.5% | 99.5% |
| 4159391 | 622.1.1.1 ↗ | alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › HSCB_C | 0.59 | 36.0 | 3.75e-01 | 79.4% | 65.3% |
| 5043089 | 5058.1.1.16 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 | 0.59 | 49.0 | 4.85e-01 | 95.1% | 84.5% |
| 3386973 | 5086.1.1.84 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_MFP_RND | 0.58 | 48.0 | 5.11e-01 | 97.1% | 100.0% |
| 4501780 | 310.2.1.5 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › DUF842 | 0.58 | 48.0 | 4.45e-01 | 87.3% | 90.4% |
| 3750000 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.57 | 36.0 | 3.66e-01 | 78.4% | 62.9% |
| 4597483 | 5058.1.1.1 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1,MS_channel_1st | 0.56 | 44.0 | 4.17e-01 | 95.1% | 70.8% |
| 4006721 | 325.1.7.50 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › PF25876 | 0.55 | 44.0 | 4.76e-01 | 93.1% | 100.0% |
| 3748412 | 604.1.1.92 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › SR_desmoplakin_3 | 0.55 | 45.0 | 4.29e-01 | 96.1% | 75.7% |
| 3220229 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.53 | 43.0 | 4.06e-01 | 94.1% | 73.3% |
| 3939120 | 180.1.1.1 ↗ | alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 | 0.51 | 45.0 | 3.91e-01 | 100.0% | 99.4% |
| 3626546 | 109.4.1.921 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_IF140-IFT172 | 0.51 | 36.0 | 3.17e-01 | 73.5% | 100.0% |
| 3974736 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.50 | 34.0 | 3.71e-01 | 70.6% | 85.9% |
D3
medium
residues 114-195
Domain cluster:
representative
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3l8kA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.71 | 59.0 | 4.33e-01 | 91.5% | 44.2% |
| 1b10A00 | 1.10.790.10 | Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Prion/Doppel protein, beta-ribbon domain | 0.70 | 49.0 | 4.53e-01 | 74.4% | 56.7% |
| 1onfA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.70 | 58.0 | 4.37e-01 | 91.5% | 49.0% |
| 1h6vA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.70 | 60.0 | 4.34e-01 | 95.1% | 46.6% |
| 1xdiA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.69 | 57.0 | 4.22e-01 | 92.7% | 45.9% |
| 4m52A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.67 | 55.0 | 4.06e-01 | 91.5% | 45.0% |
| 2iu5B00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.66 | 52.0 | 4.07e-01 | 85.4% | 78.0% |
| 5svlA01 | 1.10.287.940 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › atp-gated p2x4 ion channel | 0.65 | 46.0 | 5.04e-01 | 81.7% | 89.7% |
| 3r84B00 | 6.10.280.160 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Mediator of RNA polymerase II transcription subunit 22 | 0.64 | 43.0 | 4.41e-01 | 97.6% | 71.2% |
| 5nl6A02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 39.0 | 3.63e-01 | 100.0% | 47.2% |
| 4f3xA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.63 | 43.0 | 2.97e-01 | 89.0% | 20.1% |
| 4egwA02 | 1.20.58.340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region | 0.63 | 40.0 | 3.53e-01 | 100.0% | 44.5% |
| 2hg2A01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.62 | 39.0 | 2.72e-01 | 93.9% | 18.5% |
| 5z9iA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.62 | 51.0 | 3.28e-01 | 90.2% | 32.4% |
| 5k29A00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.59 | 37.0 | 3.55e-01 | 74.4% | 53.6% |
| 3cdlB02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.59 | 42.0 | 3.60e-01 | 75.6% | 91.7% |
| 2mpkA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.58 | 36.0 | 3.82e-01 | 89.0% | 70.3% |
| 2xmoA02 | 1.10.246.180 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.58 | 38.0 | 3.77e-01 | 75.6% | 61.6% |
| 3s84A02 | 1.20.120.20 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein | 0.58 | 50.0 | 4.12e-01 | 100.0% | 51.6% |
| 2xq9A02 | 1.20.58.390 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain | 0.58 | 42.0 | 3.77e-01 | 78.0% | 53.7% |
| 4axsA00 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.57 | 43.0 | 3.00e-01 | 81.7% | 23.0% |
| 2l81A00 | 1.20.120.830 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Serine-rich domain | 0.57 | 43.0 | 3.44e-01 | 81.7% | 97.7% |
| 3h6pC00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.56 | 37.0 | 4.40e-01 | 75.6% | 100.0% |
| 1or4B00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.56 | 40.0 | 3.32e-01 | 78.0% | 73.4% |
| 3b77B02 | 1.10.287.210 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.55 | 44.0 | 4.35e-01 | 90.2% | 100.0% |
| 4h63H01 | 1.20.58.1710 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 38.0 | 3.99e-01 | 100.0% | 83.3% |
| 2odvA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 36.0 | 3.35e-01 | 73.2% | 61.6% |
| 1e7uA05 | 1.10.1070.11 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain | 0.52 | 41.0 | 3.21e-01 | 89.0% | 95.3% |
| 1l8dA00 | 1.10.287.510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.52 | 47.0 | 4.34e-01 | 100.0% | 78.6% |
| 3rrkA02 | 1.20.1460.20 | Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › | 0.51 | 40.0 | 3.39e-01 | 90.2% | 78.7% |
| 1rylA00 | 3.40.1760.10 | Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical protein yfbM fold › YfbM-like super family | 0.51 | 37.0 | 3.05e-01 | 78.0% | 40.8% |
| 3cazB00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.51 | 42.0 | 3.32e-01 | 100.0% | 81.9% |
| 2oerA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.50 | 41.0 | 3.28e-01 | 93.9% | 70.4% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3314379 | 4953.1.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like | 0.75 | 48.0 | 5.18e-01 | 70.7% | 77.1% |
| 3978383 | 1075.1.2.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain | 0.75 | 62.0 | 4.74e-01 | 90.2% | 48.6% |
| 5077213 | 1075.1.2.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX | 0.73 | 62.0 | 4.89e-01 | 95.1% | 48.0% |
| 3173920 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.72 | 59.0 | 3.90e-01 | 90.2% | 30.9% |
| 2526759 | 2003.1.2.25 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.70 | 58.0 | 4.66e-01 | 91.5% | 63.8% |
| 2566193 | 5058.1.1.1 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1,MS_channel_1st | 0.69 | 54.0 | 4.89e-01 | 100.0% | 62.5% |
| 3468013 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.68 | 46.0 | 4.32e-01 | 96.3% | 57.0% |
| 4974472 | 7515.1.1.0 ↗ | a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like | 0.67 | 49.0 | 3.08e-01 | 79.3% | 14.6% |
| 3635933 | 5042.1.1.1 ↗ | extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › CorA | 0.66 | 51.0 | 5.33e-01 | 91.5% | 90.7% |
| 4965739 | 5063.1.1.0 ↗ | alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK | 0.66 | 49.0 | 4.97e-01 | 79.3% | 100.0% |
| 3590372 | 1075.1.2.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX | 0.66 | 57.0 | 4.46e-01 | 97.6% | 45.6% |
| 5012687 | 5058.1.1.16 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 | 0.65 | 51.0 | 4.85e-01 | 91.5% | 72.6% |
| 3811330 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.65 | 57.0 | 3.74e-01 | 100.0% | 28.9% |
| 3513849 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.64 | 51.0 | 4.36e-01 | 85.4% | 53.8% |
| None | — | 0.64 | 56.0 | 3.72e-01 | 100.0% | 29.0% | |
| 4118017 | 4336.2.1.1 ↗ | alpha duplicates or obligate multimers › YheA/YmcA-like › Protein SUS1 › Protein SUS1 › EnY2 | 0.64 | 42.0 | 3.99e-01 | 79.3% | 56.0% |
| 3421653 | 5050.1.1.1 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr | 0.63 | 56.0 | 3.59e-01 | 100.0% | 74.4% |
| 4217669 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.62 | 52.0 | 3.70e-01 | 91.5% | 30.5% |
| 4959036 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.62 | 47.0 | 4.36e-01 | 93.9% | 62.9% |
| 5003923 | 5042.1.1.1 ↗ | extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › CorA | 0.62 | 47.0 | 5.01e-01 | 96.3% | 95.7% |
| 3221686 | 5001.1.1.41 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw | 0.61 | 50.0 | 4.16e-01 | 93.9% | 98.1% |
| 3591291 | 1076.1.1.1 ↗ | alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Rce1-like | 0.60 | 54.0 | 4.06e-01 | 98.8% | 64.8% |
| 397246 | 161.1.1.1 ↗ | alpha complex topology › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › SecA_SW | 0.60 | 47.0 | 3.51e-01 | 87.8% | 32.8% |
| 3314055 | 5042.1.1.0 ↗ | extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region | 0.60 | 46.0 | 4.86e-01 | 90.2% | 91.9% |
| 4217794 | 5086.1.1.94 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HB_LcnD | 0.60 | 53.0 | 4.63e-01 | 100.0% | 84.0% |
| 5040843 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.60 | 47.0 | 4.52e-01 | 86.6% | 75.8% |
| 5055969 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.59 | 45.0 | 4.28e-01 | 100.0% | 69.5% |
| 1489340 | 2003.1.9.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins | 0.58 | 45.0 | 3.23e-01 | 82.9% | 65.4% |
| 4159276 | 563.1.1.0 ↗ | alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase | 0.57 | 39.0 | 3.88e-01 | 72.0% | 100.0% |
| 4281985 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.56 | 47.0 | 4.09e-01 | 100.0% | 66.4% |
| 4987661 | 5076.2.1.13 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › DUF7847 | 0.55 | 40.0 | 2.98e-01 | 81.7% | 28.3% |
| 3245162 | 604.1.1.127 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › EMC4 | 0.55 | 40.0 | 3.55e-01 | 76.8% | 59.2% |
| 3760698 | 192.2.1.53 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › PF31016 | 0.54 | 49.0 | 4.13e-01 | 100.0% | 60.7% |
| 4001943 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.54 | 38.0 | 3.38e-01 | 72.0% | 95.8% |
| 3545963 | 3291.1.1.85 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › PF31016 | 0.54 | 49.0 | 4.13e-01 | 100.0% | 63.0% |
| 3873518 | 3755.3.1.498 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › PF31016 | 0.54 | 48.0 | 4.06e-01 | 100.0% | 60.7% |
| 4283815 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.54 | 39.0 | 2.77e-01 | 76.8% | 33.0% |
| 3614525 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.51 | 36.0 | 3.33e-01 | 74.4% | 80.0% |
| 3500503 | 192.8.1.300 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › SOAR | 0.51 | 46.0 | 4.13e-01 | 100.0% | 79.1% |
| 3298752 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.51 | 43.0 | 3.86e-01 | 93.9% | 84.3% |
D4
medium
residues 256-318
Domain cluster:
rep: NC_009813.1__YP_001468708.1__LiPB054_gp04__00004__D205-269
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04233.20 best | Phage_Mu_F | 31.6 | 3.30e-07 | 88.9% | 34.8% |