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JQ182726.1__AFM75955.1__mEpX2_052__00051

Bact-Vir

JQ182726.1__AFM75955.1__mEpX2_052__00051

Identity

Accession:
JQ182726 ↗
Kingdom:
phage

Quality

68.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 5-54
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF17466.8 best NinD 115.5 1.20e-33 96.0% 84.2%
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3goxA02 3.30.60.130 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.81 56.0 5.44e-01 72.0% 77.8%
2gviA03 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.77 49.0 5.58e-01 70.0% 97.1%
2zetC00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.75 51.0 3.66e-01 72.0% 25.5%
1zbdB00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.74 54.0 4.03e-01 78.0% 42.3%
2luyA01 3.30.60.210 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Stc1 domain 0.72 48.0 4.67e-01 70.0% 87.7%
1wimA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.71 52.0 4.19e-01 78.0% 41.5%
7yuiB01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.69 48.0 3.98e-01 74.0% 44.3%
2d8yA01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.66 44.0 3.95e-01 70.0% 59.7%
1y02A01 1.10.720.140 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.65 52.0 4.48e-01 88.0% 69.2%
4b6dB00 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.64 44.0 4.22e-01 74.0% 63.2%
2xb1A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.64 46.0 3.80e-01 76.0% 50.0%
4qf3A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.63 45.0 4.34e-01 74.0% 73.7%
1vyxA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.63 44.0 4.26e-01 76.0% 70.0%
6xi7B02 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.63 41.0 4.53e-01 74.0% 87.2%
2xqnT01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.63 41.0 3.85e-01 70.0% 53.2%
1xa6A02 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.63 44.0 4.00e-01 74.0% 56.5%
4jcjC02 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.63 42.0 4.03e-01 70.0% 74.1%
7po9A01 3.40.1800.20 Alpha Beta › 3-Layer(aba) Sandwich › His-Me finger endonuclease fold › 0.61 42.0 3.57e-01 72.0% 70.9%
2cszA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.61 47.0 4.11e-01 84.0% 55.3%
4jcjB01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.60 41.0 3.82e-01 76.0% 55.4%
2xjyA01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.59 40.0 3.82e-01 78.0% 57.1%
1a7iA00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.58 40.0 3.83e-01 74.0% 73.3%
2ku3A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.58 41.0 3.90e-01 78.0% 62.9%
2epcA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.55 33.0 3.66e-01 76.0% 87.9%
2kyuA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.54 44.0 4.05e-01 96.0% 68.7%
5tdrA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.53 44.0 4.00e-01 100.0% 67.1%
1wigA00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.53 37.0 3.35e-01 76.0% 67.1%
2cg7A01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.52 33.0 3.41e-01 100.0% 69.6%
ECOD (88)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3962784 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.80 54.0 6.30e-01 70.0% 100.0%
3397474 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.80 55.0 6.13e-01 72.0% 92.5%
3796017 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.78 54.0 4.62e-01 72.0% 48.0%
3901194 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.78 53.0 4.31e-01 72.0% 42.2%
3627614 376.1.3.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.77 53.0 5.01e-01 72.0% 60.0%
3924159 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.77 54.0 4.39e-01 74.0% 43.3%
3559289 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.76 52.0 4.33e-01 72.0% 44.7%
3233552 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.76 53.0 5.39e-01 74.0% 78.0%
5031996 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.76 52.0 5.05e-01 72.0% 78.2%
3301384 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.76 53.0 5.18e-01 74.0% 80.0%
4000128 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.75 53.0 4.37e-01 74.0% 43.5%
3830263 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.75 52.0 5.25e-01 72.0% 78.0%
3498231 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.75 56.0 4.58e-01 78.0% 45.9%
3269935 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.75 55.0 4.18e-01 78.0% 36.4%
3735240 376.1.1.114 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf_RING-like 0.75 51.0 4.81e-01 72.0% 83.3%
5042937 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.73 51.0 5.00e-01 74.0% 69.1%
3472338 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.73 53.0 5.02e-01 78.0% 65.0%
3643916 375.1.1.235 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › ADD_ATRX 0.72 49.0 5.40e-01 72.0% 90.0%
3226161 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.72 53.0 4.37e-01 78.0% 45.9%
8098 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.71 52.0 4.19e-01 78.0% 41.5%
3466575 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.71 52.0 4.78e-01 78.0% 73.8%
3525060 376.1.3.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.70 48.0 4.68e-01 72.0% 81.8%
5027908 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.69 53.0 5.58e-01 86.0% 93.3%
3702126 376.1.1.27 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.68 50.0 4.16e-01 78.0% 45.9%
3468455 376.1.3.16 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › ADD_ATRX 0.68 47.0 5.06e-01 72.0% 90.0%
3259718 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.68 50.0 3.90e-01 78.0% 37.1%
3796016 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.68 46.0 4.47e-01 70.0% 63.6%
3372479 376.1.3.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.68 48.0 4.71e-01 74.0% 78.2%
4977157 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.68 49.0 5.09e-01 76.0% 97.8%
3846283 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.68 46.0 4.63e-01 72.0% 76.0%
3597770 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.67 47.0 4.76e-01 74.0% 96.0%
3259913 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.67 49.0 4.30e-01 78.0% 52.0%
3900352 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.67 47.0 3.82e-01 74.0% 41.1%
5061253 376.1.3.97 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › Prok-RING_2 0.67 48.0 4.09e-01 76.0% 57.5%
3685606 376.1.3.31 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-4CXXC_R1 0.67 55.0 4.98e-01 98.0% 67.7%
3249848 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.67 49.0 4.09e-01 78.0% 45.9%
3372361 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.67 47.0 5.04e-01 74.0% 100.0%
3717337 376.1.1.165 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › FYVE 0.67 46.0 4.02e-01 72.0% 49.3%
3671431 376.1.1.40 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_11 0.67 47.0 4.95e-01 76.0% 84.4%
3510157 376.1.5.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › AN1-like Zinc finger 0.67 44.0 4.64e-01 72.0% 77.8%
4957186 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.66 44.0 4.47e-01 70.0% 72.0%
3726465 376.1.3.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.66 47.0 4.31e-01 74.0% 69.2%
3066048 376.1.1.20 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.65 45.0 3.77e-01 74.0% 42.9%
3914063 376.1.3.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.65 45.0 4.47e-01 74.0% 75.5%
3733728 376.1.3.31 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-4CXXC_R1 0.65 53.0 4.53e-01 100.0% 56.2%
3341208 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.65 57.0 4.69e-01 96.0% 77.6%
3252718 377.1.1.96 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › PF25999 0.64 44.0 4.72e-01 72.0% 90.0%
3934068 376.1.3.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.64 43.0 4.39e-01 70.0% 80.0%
3217003 376.1.3.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.64 46.0 4.40e-01 98.0% 65.0%
1906689 376.1.3.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.64 46.0 4.07e-01 76.0% 62.5%
3677070 376.1.3.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.64 43.0 4.53e-01 92.0% 80.0%
3521135 376.1.3.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.63 46.0 4.19e-01 74.0% 57.1%
3642066 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.63 44.0 4.56e-01 72.0% 80.0%
3307915 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.63 45.0 4.16e-01 76.0% 80.0%
3720327 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.63 55.0 4.32e-01 96.0% 71.0%
3599588 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.63 54.0 4.13e-01 94.0% 67.3%
3177567 376.1.3.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.63 44.0 4.19e-01 74.0% 63.3%
3623406 376.1.1.20 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.62 55.0 4.38e-01 96.0% 77.9%
3404271 377.1.1.5 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.62 44.0 4.10e-01 78.0% 58.5%
3461252 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.62 42.0 4.03e-01 72.0% 75.0%
3430371 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.62 55.0 4.33e-01 96.0% 72.6%
3443068 376.1.3.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.61 44.0 4.11e-01 100.0% 60.0%
3684391 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.61 54.0 4.39e-01 96.0% 75.6%
3423210 376.1.3.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.61 46.0 3.69e-01 100.0% 41.0%
3738336 376.1.3.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.61 45.0 4.45e-01 98.0% 72.7%
3243231 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.61 46.0 4.38e-01 100.0% 68.3%
3628258 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 41.0 2.92e-01 72.0% 22.0%
3343337 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.61 53.0 4.42e-01 96.0% 78.8%
3438467 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.61 54.0 4.34e-01 96.0% 78.9%
3995951 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.61 55.0 4.52e-01 98.0% 77.6%
3624149 376.1.3.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.61 42.0 3.44e-01 72.0% 41.1%
3636201 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.60 55.0 4.11e-01 100.0% 80.9%
3647832 376.1.3.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.60 43.0 3.65e-01 98.0% 44.3%
3995473 376.1.3.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.60 44.0 4.19e-01 100.0% 66.7%
3797725 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.59 43.0 4.19e-01 98.0% 70.9%
4670027 377.1.1.6 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.58 42.0 3.92e-01 82.0% 75.7%
3499880 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.58 43.0 3.37e-01 84.0% 40.8%
3172298 376.1.3.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.57 46.0 3.38e-01 88.0% 40.0%
3361724 377.1.1.6 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.57 43.0 3.68e-01 86.0% 62.2%
3258861 377.1.1.5 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.56 47.0 4.80e-01 100.0% 100.0%
4004176 376.1.3.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.55 42.0 4.05e-01 100.0% 71.7%
2647807 376.1.3.9 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD_2 0.55 38.0 3.82e-01 74.0% 92.2%
3228380 376.1.3.18 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD_5 0.55 45.0 3.96e-01 98.0% 58.2%
3743721 376.1.1.93 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SIP5_N 0.55 49.0 3.71e-01 100.0% 67.8%
4674226 376.1.1.93 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SIP5_N 0.55 49.0 3.68e-01 100.0% 51.3%
3723773 376.1.3.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.53 44.0 3.93e-01 98.0% 65.7%
3268166 376.1.3.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.53 41.0 4.13e-01 98.0% 86.0%
3371338 377.1.1.12 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-C5HC2 0.51 43.0 3.22e-01 100.0% 37.0%