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JQ182729.1__AFM76131.1__mEp390_035__00035

Bact-Vir

JQ182729.1__AFM76131.1__mEp390_035__00035

Identity

Accession:
JQ182729 ↗
Kingdom:
phage

Quality

74.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Enterobacteria_phage_mEp390

TaxID: 1147158

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 102-168
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6ynwH01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.77 63.0 6.10e-01 89.6% 98.6%
2x2vA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.73 62.0 6.21e-01 95.5% 100.0%
3r0qA02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.72 63.0 4.45e-01 97.0% 74.5%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.71 63.0 6.06e-01 100.0% 92.2%
2xokP00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.71 59.0 5.77e-01 92.5% 91.9%
2v40A02 1.10.300.10 Mainly Alpha › Orthogonal Bundle › Adenylosuccinate Synthetase, subunit A; domain 2 › Adenylosuccinate Synthetase, subunit A, domain 2 0.71 41.0 3.76e-01 71.6% 44.3%
3h4cA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.71 41.0 3.63e-01 80.6% 40.6%
2y39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.70 61.0 5.21e-01 98.5% 65.5%
4gzrC00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.70 56.0 5.90e-01 89.6% 96.7%
3pyoY00 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.68 47.0 4.93e-01 89.6% 79.0%
1wa8A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.68 60.0 5.29e-01 100.0% 73.7%
2ic6A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 55.0 5.49e-01 98.5% 100.0%
7nc3F01 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.64 52.0 4.48e-01 92.5% 62.3%
1r5aA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.64 54.0 4.33e-01 95.5% 50.0%
3r6nA02 1.20.58.1060 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 54.0 4.24e-01 100.0% 48.4%
5fhiA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.63 53.0 4.24e-01 95.5% 51.1%
4lunU00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.62 53.0 3.48e-01 97.0% 21.9%
2qytA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.61 43.0 3.80e-01 76.1% 56.4%
6t0bc01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.56 45.0 4.32e-01 100.0% 78.2%
2i53A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.54 39.0 3.34e-01 76.1% 49.5%
2ii2A01 1.10.220.10 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin 0.53 29.0 2.91e-01 80.6% 49.3%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3651438 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.77 68.0 5.76e-01 100.0% 65.5%
3682039 604.1.1.188 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Mito_carr 0.76 68.0 5.75e-01 100.0% 69.1%
4180835 5041.1.1.1 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C 0.75 63.0 6.24e-01 94.0% 100.0%
1790834 3086.1.1.1 ↗ alpha bundles › Diacylglycerol kinase (DAGK) › Diacylglycerol kinase (DAGK) › Diacylglycerol kinase (DAGK) › DAGK_prokar 0.74 66.0 6.08e-01 98.5% 82.1%
3662730 206.1.1.20 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.73 60.0 3.91e-01 92.5% 32.3%
3353220 4207.1.1.0 ↗ alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › RNA polymerase II holoenzyme component SRB7 (MED21) 0.73 62.0 5.32e-01 94.0% 64.8%
3691750 376.1.1.8 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box 0.72 58.0 4.42e-01 88.1% 38.9%
3570117 375.6.1.2 ↗ few secondary structure elements › Rubredoxin-like › FlhC-like › FlhC-like › PF31275 0.72 56.0 5.82e-01 85.1% 98.3%
5075035 7516.1.1.2 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.66 56.0 3.76e-01 98.5% 33.5%
3435812 3711.1.1.0 ↗ alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein 0.63 54.0 4.46e-01 98.5% 56.0%
1316757 109.4.1.32 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MIF4G 0.62 53.0 3.50e-01 97.0% 22.2%
3758790 633.6.1.0 ↗ alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like 0.62 52.0 4.14e-01 94.0% 52.6%
3900796 605.4.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein 0.62 52.0 4.18e-01 94.0% 47.4%
3344575 9.26.1.0 ↗ beta barrels › Lipocalins/Streptavidin 0.61 48.0 3.53e-01 89.6% 31.8%