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JQ245707.2__AEZ65683.1__X__00108

Bact-Vir

JQ245707.2__AEZ65683.1__X__00108

Identity

Accession:
JQ245707 ↗
Kingdom:
phage

Quality

69.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Aurunvirus› Cyanophage_S-TIM5

TaxID: 1137745

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1283-1363
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2as9B01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 32.0 3.05e-01 71.6% 40.6%
4nkbA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.57 37.0 3.39e-01 81.5% 48.2%
3f6gA02 3.30.160.340 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 35.0 3.85e-01 98.8% 85.7%
3pijA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 41.0 2.73e-01 87.7% 42.8%
7k7jA02 2.60.40.1770 Mainly Beta › Sandwich › Immunoglobulin-like › ephrin a2 ectodomain 0.52 29.0 3.25e-01 80.2% 71.0%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3601580 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 35.0 2.38e-01 100.0% 16.1%
3264469 4.1.1.309 ↗ beta barrels › SH3 › SH3 › SH3 › MRP-S34 0.50 35.0 3.50e-01 74.1% 72.9%
D2 medium residues 1-63
PDB
D3 medium residues 494-572
PDB
D4 medium residues 584-677
PDB
Domain cluster: rep: IMGVR_UViG_3300025317_000379-3300025317-Ga0209541_100625042__D773-849
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4bumX00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.60 50.0 3.61e-01 92.6% 43.5%
4n9jA02 3.30.1120.130 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.60 39.0 3.80e-01 70.2% 58.9%
1uypA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.58 41.0 3.01e-01 74.5% 47.7%
2v43A01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.58 43.0 3.45e-01 78.7% 93.4%
3juuA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 44.0 3.17e-01 79.8% 72.0%
3u1wA01 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 47.0 3.82e-01 92.6% 89.6%
2x9oA00 3.40.1500.20 Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › 0.55 44.0 3.39e-01 88.3% 56.2%
1hpwA00 3.30.700.10 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Glycoprotein, Type 4 Pilin 0.54 39.0 3.56e-01 77.7% 69.8%
4fr9A00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 43.0 3.83e-01 91.5% 84.4%
2jhnA01 3.30.310.20 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain 0.52 30.0 2.88e-01 80.9% 45.1%
3p24A01 2.40.128.470 Mainly Beta › Beta Barrel › Lipocalin › 0.52 39.0 3.43e-01 81.9% 82.4%
5m8cB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 44.0 3.15e-01 100.0% 54.0%
1o8vA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 37.0 3.36e-01 77.7% 58.6%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4029311 5.1.4.73 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RAB3GAP2_N 0.61 44.0 2.97e-01 76.6% 36.2%
4609923 77.3.1.4 ↗ beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › PF28998 0.60 53.0 4.76e-01 98.9% 83.7%
3921013 3735.1.1.0 ↗ beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein 0.59 51.0 2.84e-01 100.0% 96.4%
4030652 77.3.1.0 ↗ beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain 0.58 51.0 4.42e-01 98.9% 68.0%
4944443 3504.3.1.1 ↗ beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N 0.56 43.0 3.78e-01 84.0% 94.7%
4432835 5.1.5.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Nup88 0.55 45.0 2.87e-01 90.4% 47.4%
None — 0.55 47.0 3.25e-01 100.0% 58.2%
None — 0.54 46.0 3.15e-01 100.0% 68.0%
3662904 243.6.1.4 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA 0.52 36.0 3.54e-01 71.3% 95.0%
3605262 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.51 37.0 3.52e-01 75.5% 74.5%
5048444 5.1.4.143 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF6454 0.51 40.0 3.05e-01 87.2% 57.1%
3778542 5.1.4.34 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup88 0.51 45.0 2.84e-01 100.0% 45.9%
1820980 79.1.1.2 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Hyaluronidase_1 0.50 44.0 3.45e-01 98.9% 65.1%
D5 medium residues 690-793
PDB
Domain cluster: rep: IMGVR_UViG_3300029959_001475-3300029959-Ga0272380_100422723__D80-169