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JQ246028.1__AFC61946.1__phi8074-B1_00014__00014
Bact-VirJQ246028.1__AFC61946.1__phi8074-B1_00014__00014
Identity
- Accession:
- JQ246028 ↗
- Kingdom:
- phage
Quality
63.3
mean pLDDT
Cluster
View cluster (16 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 13-158_335-358
Domain cluster:
rep: OR354825.1__WNM51604.1__CoNPh2_CDS0050__00048__D273-380_559-584
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF10145.15 best | PhageMin_Tail | 53.5 | 4.20e-14 | 50.6% | 33.8% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6tblB01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.58 | 24.0 | 2.97e-01 | 98.2% | 57.7% |
| 8a0rA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.54 | 27.0 | 3.05e-01 | 98.8% | 61.5% |
| 1n4kA02 | 1.25.10.30 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › IP3 receptor type 1 binding core, RIH domain | 0.52 | 27.0 | 2.96e-01 | 100.0% | 58.1% |
| 4ap2B01 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.51 | 30.0 | 3.31e-01 | 96.5% | 70.9% |
| 2vm6A00 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.51 | 32.0 | 3.38e-01 | 98.8% | 69.4% |
| 3nrgA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.50 | 32.0 | 3.03e-01 | 97.6% | 50.2% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4032310 | 159.1.2.6 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PhageMin_Tail | 0.98 | 68.0 | 7.25e-01 | 70.0% | 100.0% |
| 4030882 | 159.1.2.6 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PhageMin_Tail | 0.64 | 45.0 | 4.18e-01 | 70.6% | 91.9% |
| 3335082 | 5073.1.1.0 ↗ | alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain M | 0.57 | 45.0 | 3.42e-01 | 82.4% | 82.5% |
| 3675734 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.55 | 23.0 | 2.90e-01 | 96.5% | 61.0% |
| 3708568 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.51 | 40.0 | 2.91e-01 | 83.5% | 75.1% |
| 3892495 | 604.1.1.7 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › SR_plectin_7 | 0.51 | 32.0 | 3.78e-01 | 100.0% | 88.3% |
| 3965327 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.51 | 37.0 | 3.24e-01 | 87.6% | 50.4% |
D2
medium
residues 159-226_323-334
Domain cluster:
rep: MK994522__QGH71189.1__X__00033__D194-260
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF10145.15 best | PhageMin_Tail | 57.0 | 3.60e-15 | 91.2% | 34.8% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1aisB01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.64 | 48.0 | 4.53e-01 | 81.2% | 92.9% |
| 3lynB00 | 1.20.150.10 | Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein | 0.60 | 47.0 | 4.14e-01 | 87.5% | 93.5% |
| 2k0nA00 | 1.10.246.20 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain | 0.59 | 43.0 | 4.23e-01 | 77.5% | 89.4% |
| 1ltmA02 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.53 | 40.0 | 3.24e-01 | 85.0% | 72.8% |
| 1eb6A00 | 3.40.390.10 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) | 0.51 | 37.0 | 2.94e-01 | 78.8% | 57.6% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4030882 | 159.1.2.6 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PhageMin_Tail | 0.99 | 94.0 | 6.57e-01 | 97.5% | 82.9% |
| 3550283 | 102.1.3.8 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › PAP/OAS1 substrate-binding domain › Mab-21_C | 0.61 | 52.0 | 4.55e-01 | 98.8% | 95.4% |
| 4032782 | 4125.1.1.0 ↗ | alpha superhelices › BH3980-like › BH3980-like › BH3980-like | 0.56 | 38.0 | 4.16e-01 | 72.5% | 100.0% |
| 3507837 | 101.8.1.2 ↗ | alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 | 0.55 | 42.0 | 3.40e-01 | 85.0% | 85.1% |
| 3314191 | 314.1.1.9 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His | 0.55 | 38.0 | 2.55e-01 | 73.8% | 62.3% |
| 3946339 | 5048.1.1.2 ↗ | alpha complex topology › Aquaporin-like › Aquaporin-like › Aquaporin-like › Form_Nir_trans | 0.55 | 42.0 | 3.31e-01 | 83.7% | 79.4% |
| 3216006 | 110.1.1.0 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain | 0.51 | 34.0 | 3.38e-01 | 71.2% | 83.3% |
| 3941995 | 131.1.1.13 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_5 | 0.50 | 37.0 | 2.91e-01 | 82.5% | 96.0% |
D3
medium
residues 227-322
Domain cluster:
rep: IMGVR_UViG_3300038316_000210-3300038316-Ga0134847_001382_15821_19906__D247-276_389-438
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2hyjA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.55 | 39.0 | 3.39e-01 | 72.9% | 87.1% |
| 1vj7B01 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.54 | 44.0 | 3.70e-01 | 90.6% | 84.4% |
| 4fevA02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.54 | 37.0 | 3.12e-01 | 71.9% | 85.5% |
| 6j8eA01 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.54 | 40.0 | 3.93e-01 | 85.4% | 73.6% |
| 1rx0A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.53 | 44.0 | 3.83e-01 | 92.7% | 98.1% |
| 2kuaA01 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.53 | 36.0 | 3.15e-01 | 99.0% | 45.0% |
| 2b48A00 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.53 | 36.0 | 3.19e-01 | 90.6% | 47.6% |
| 2vixA03 | 1.20.1280.240 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.52 | 36.0 | 3.48e-01 | 71.9% | 86.7% |
| 1oshA00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.51 | 40.0 | 3.13e-01 | 84.4% | 69.9% |
| 5af7B03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.51 | 43.0 | 3.80e-01 | 94.8% | 98.6% |
| 4x28C03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.50 | 43.0 | 3.86e-01 | 100.0% | 98.6% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4030882 | 159.1.2.6 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PhageMin_Tail | 0.81 | 76.0 | 5.76e-01 | 100.0% | 46.2% |
| 5039845 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.60 | 45.0 | 4.26e-01 | 80.2% | 93.0% |
| 5065678 | 4070.1.1.2 ↗ | alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50 | 0.52 | 41.0 | 3.29e-01 | 85.4% | 97.6% |
D4
medium
residues 488-589