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JQ246028.1__AFC61987.1__phi8074-B1_00055__00055
Bact-VirJQ246028.1__AFC61987.1__phi8074-B1_00055__00055
Identity
- Accession:
- JQ246028 ↗
- Kingdom:
- phage
Quality
73.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-67
D2
high
residues 74-206
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07659.17 best | DUF1599 | 34.5 | 2.80e-08 | 44.4% | 86.9% |
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3f4mA00 | 1.20.1440.160 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like | 0.71 | 41.0 | 3.95e-01 | 78.9% | 50.0% |
| 5xtck00 | 1.10.287.3510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.70 | 42.0 | 4.87e-01 | 78.9% | 81.4% |
| 2a9uA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.69 | 44.0 | 4.56e-01 | 85.0% | 68.3% |
| 1v9vA01 | 1.20.1480.20 | Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › MAST3 pre-PK domain-like | 0.62 | 34.0 | 3.98e-01 | 72.2% | 73.7% |
| 5figA00 | 1.20.1270.360 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.61 | 35.0 | 4.03e-01 | 80.5% | 75.0% |
| 2fbnA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.61 | 35.0 | 3.41e-01 | 83.5% | 49.0% |
| 2h7oA01 | 1.20.120.1330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Rac1-binding domain, N-terminal GTPase binding subdomain | 0.60 | 41.0 | 4.32e-01 | 82.0% | 74.8% |
| 2rldA00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.60 | 37.0 | 3.95e-01 | 78.2% | 70.2% |
| 2xs1A01 | 1.25.40.280 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › alix/aip1 like domains | 0.60 | 44.0 | 3.23e-01 | 75.2% | 96.1% |
| 3rauA00 | 1.25.40.280 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › alix/aip1 like domains | 0.60 | 44.0 | 3.20e-01 | 75.2% | 94.4% |
| 2kbwA01 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.60 | 47.0 | 4.55e-01 | 100.0% | 73.2% |
| 6tqpA01 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.59 | 45.0 | 4.50e-01 | 100.0% | 77.9% |
| 3ckdA02 | 1.20.58.360 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Shigella T3SS effector IpaH defines | 0.59 | 41.0 | 4.24e-01 | 70.7% | 95.2% |
| 1iyhB02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.59 | 38.0 | 4.16e-01 | 88.7% | 80.6% |
| 3fr3B02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.58 | 39.0 | 4.17e-01 | 88.7% | 78.3% |
| 2qvaA01 | 1.20.58.190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 | 0.58 | 38.0 | 3.90e-01 | 75.9% | 67.4% |
| 2d2sA02 | 1.20.58.1220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Exo84p, C-terminal helical domain | 0.58 | 35.0 | 3.95e-01 | 71.4% | 78.2% |
| 7fhyB01 | 1.50.10.100 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase | 0.57 | 43.0 | 3.37e-01 | 79.7% | 49.1% |
| 2b1eA04 | 1.20.1280.170 | Mainly Alpha › Up-down Bundle › Monooxygenase › Exocyst complex component Exo70 | 0.57 | 39.0 | 4.05e-01 | 77.4% | 74.0% |
| 3ljbA00 | 1.20.120.1240 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Dynamin, middle domain | 0.56 | 39.0 | 3.36e-01 | 72.2% | 69.9% |
| 1fewA00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 40.0 | 3.66e-01 | 73.7% | 72.8% |
| 4nooB00 | 1.10.8.1160 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.55 | 30.0 | 3.56e-01 | 94.7% | 75.8% |
| 3dtoA01 | 1.10.472.50 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like | 0.54 | 28.0 | 3.31e-01 | 75.9% | 70.5% |
| 8hk0B03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.54 | 37.0 | 3.70e-01 | 79.7% | 67.4% |
| 1kplA00 | 1.10.3080.10 | Mainly Alpha › Orthogonal Bundle › Clc chloride channel › Clc chloride channel | 0.54 | 47.0 | 3.27e-01 | 94.0% | 59.1% |
| 2f07B00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.53 | 44.0 | 3.85e-01 | 89.5% | 78.1% |
| 3axjB01 | 1.20.58.190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 | 0.53 | 43.0 | 4.08e-01 | 86.5% | 76.1% |
| 4od4A02 | 1.20.120.1780 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › UbiA prenyltransferase | 0.53 | 36.0 | 3.85e-01 | 75.2% | 79.0% |
| 4u7iA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.52 | 35.0 | 3.98e-01 | 78.9% | 95.7% |
| 7zh0A01 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.52 | 45.0 | 3.28e-01 | 97.0% | 58.7% |
| 7sk7A01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.52 | 39.0 | 3.22e-01 | 78.9% | 81.0% |
| 6xkyA01 | 1.20.1330.10 | Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain | 0.52 | 38.0 | 3.36e-01 | 75.2% | 55.6% |
| 1g8xA06 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 38.0 | 2.87e-01 | 75.9% | 33.5% |
| 7y3eA01 | 1.20.1530.20 | Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › | 0.51 | 44.0 | 3.13e-01 | 93.2% | 39.9% |
| 1s3qG00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.51 | 38.0 | 3.56e-01 | 78.2% | 84.0% |
| 1foeA01 | 1.20.900.10 | Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain | 0.50 | 38.0 | 3.34e-01 | 80.5% | 99.5% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4025277 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.63 | 48.0 | 3.91e-01 | 79.7% | 71.2% |
| 4985780 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.61 | 47.0 | 4.03e-01 | 82.0% | 71.4% |
| 3968384 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.60 | 46.0 | 4.03e-01 | 82.0% | 75.1% |
| 4534579 | 101.11.1.9 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Ycf1 | 0.60 | 46.0 | 3.89e-01 | 82.0% | 88.4% |
| 3723563 | 3567.1.1.0 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer | 0.60 | 43.0 | 3.68e-01 | 73.7% | 63.3% |
| 3756738 | 5050.1.1.10 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_2 | 0.58 | 45.0 | 3.87e-01 | 82.7% | 76.7% |
| 3435257 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 41.0 | 4.23e-01 | 72.9% | 78.4% |
| 4590424 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.57 | 45.0 | 3.93e-01 | 82.7% | 77.0% |
| 4950461 | 1079.1.1.5 ↗ | alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › DsbD_2 | 0.57 | 44.0 | 3.85e-01 | 82.7% | 77.1% |
| 3542036 | 601.1.1.134 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › TPR_Edg1 | 0.57 | 43.0 | 3.29e-01 | 85.7% | 34.9% |
| 5005724 | 3755.3.1.637 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF7121 | 0.57 | 35.0 | 2.88e-01 | 70.7% | 34.5% |
| 4989287 | 1079.1.1.0 ↗ | alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA | 0.56 | 43.0 | 3.74e-01 | 82.0% | 93.6% |
| 4506496 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.56 | 43.0 | 3.82e-01 | 82.0% | 77.8% |
| 4980270 | 1075.5.1.4 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › Polysacc_synt | 0.56 | 43.0 | 3.76e-01 | 80.5% | 87.8% |
| 4927884 | 5050.1.1.21 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › FTR1 | 0.56 | 44.0 | 3.70e-01 | 86.5% | 94.1% |
| 3578422 | 109.4.1.1552 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28736 | 0.56 | 42.0 | 3.55e-01 | 85.7% | 47.3% |
| 3806998 | 601.1.1.97 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › DNA_repr_REX1B | 0.56 | 39.0 | 3.73e-01 | 71.4% | 62.7% |
| 3321040 | 1075.5.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE | 0.55 | 41.0 | 3.46e-01 | 75.2% | 67.6% |
| 3978383 | 1075.1.2.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain | 0.55 | 39.0 | 3.58e-01 | 73.7% | 82.7% |
| 3896445 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.55 | 43.0 | 3.58e-01 | 82.7% | 64.6% |
| 4948369 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.55 | 39.0 | 3.88e-01 | 71.4% | 89.1% |
| 4517222 | 1075.5.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE | 0.55 | 42.0 | 3.49e-01 | 80.5% | 77.6% |
| 3388232 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.55 | 42.0 | 3.75e-01 | 82.0% | 75.5% |
| 3935426 | 109.4.1.791 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_17 | 0.55 | 37.0 | 4.34e-01 | 72.2% | 96.8% |
| 3879758 | 192.29.1.50 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › PTPLA | 0.55 | 41.0 | 3.60e-01 | 79.7% | 72.4% |
| 4022845 | 1065.1.1.1 ↗ | alpha bundles › SPX domain › SPX domain › SPX domain › SPX | 0.54 | 46.0 | 3.93e-01 | 92.5% | 90.0% |
| 4943814 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.54 | 41.0 | 3.71e-01 | 82.0% | 78.9% |
| 3675407 | 192.29.1.54 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › BPS1 | 0.54 | 41.0 | 3.39e-01 | 80.5% | 96.2% |
| 3992675 | 109.4.1.313 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › UTP20_N | 0.53 | 44.0 | 3.58e-01 | 88.7% | 61.6% |
| 3212065 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.53 | 37.0 | 3.72e-01 | 78.9% | 69.6% |
| 3176648 | 603.1.1.6 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin_2 | 0.53 | 43.0 | 3.74e-01 | 85.0% | 92.5% |
| 3940580 | 604.6.1.14 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › RasGAP_C | 0.53 | 39.0 | 4.13e-01 | 78.9% | 87.0% |
| 5022961 | 1075.5.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter | 0.53 | 41.0 | 3.64e-01 | 82.0% | 89.7% |
| 3263522 | 5050.1.1.11 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › UNC-93 | 0.52 | 44.0 | 3.83e-01 | 91.0% | 73.2% |
| 4198311 | 1075.5.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE | 0.52 | 41.0 | 3.54e-01 | 85.0% | 94.4% |
| 4497291 | 1075.5.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE | 0.52 | 39.0 | 3.25e-01 | 78.9% | 75.1% |
| 3960319 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.52 | 42.0 | 3.85e-01 | 85.0% | 97.1% |
| 5073700 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 42.0 | 3.76e-01 | 86.5% | 78.4% |
| 3877721 | 5001.1.1.3 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_2 | 0.51 | 38.0 | 3.61e-01 | 77.4% | 65.0% |
| 3298505 | 109.4.1.228 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Exo84_C | 0.51 | 39.0 | 3.19e-01 | 82.0% | 47.7% |
| 4941333 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.51 | 43.0 | 3.93e-01 | 91.0% | 82.9% |
| 5040880 | 1188.1.1.1 ↗ | alpha bundles › ZIP zinc transporter › ZIP zinc transporter › ZIP zinc transporter › Zip | 0.51 | 40.0 | 3.43e-01 | 85.0% | 67.7% |
| 4118685 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.50 | 42.0 | 3.70e-01 | 91.7% | 60.0% |