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JQ246028.1__AFC61988.1__phi8074-B1_00056__00056
Bact-VirJQ246028.1__AFC61988.1__phi8074-B1_00056__00056
Identity
- Accession:
- JQ246028 ↗
- Kingdom:
- phage
Quality
69.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 39-98
Domain cluster:
representative
CATH (77)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6uglB02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.91 | 62.0 | 6.29e-01 | 71.7% | 72.4% |
| 3ulqB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.91 | 67.0 | 6.81e-01 | 80.0% | 79.3% |
| 1ku3A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.89 | 77.0 | 7.65e-01 | 90.0% | 96.7% |
| 2lfwA01 | 1.20.140.160 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain | 0.89 | 74.0 | 5.46e-01 | 88.3% | 37.6% |
| 6v7xB02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.89 | 61.0 | 6.33e-01 | 73.3% | 76.8% |
| 4nqwA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.88 | 75.0 | 7.34e-01 | 90.0% | 84.4% |
| 1a04A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.88 | 67.0 | 5.98e-01 | 81.7% | 60.0% |
| 4qicC01 | 1.20.140.160 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain | 0.87 | 73.0 | 5.62e-01 | 90.0% | 44.0% |
| 2o8xA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.87 | 70.0 | 6.98e-01 | 85.0% | 83.6% |
| 3c57B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.87 | 66.0 | 7.18e-01 | 88.3% | 98.0% |
| 1rp3G02 | 1.20.140.160 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain | 0.86 | 77.0 | 5.64e-01 | 98.3% | 40.1% |
| 1s7oB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.86 | 78.0 | 6.26e-01 | 95.0% | 54.3% |
| 3t0yA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.86 | 69.0 | 6.94e-01 | 86.7% | 85.0% |
| 5fgmA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.85 | 77.0 | 7.46e-01 | 100.0% | 89.2% |
| 5f64A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.85 | 67.0 | 6.20e-01 | 85.0% | 66.7% |
| 3hugA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.85 | 77.0 | 6.88e-01 | 96.7% | 72.5% |
| 4gvpA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.85 | 67.0 | 4.48e-01 | 85.0% | 24.3% |
| 3p7nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.84 | 66.0 | 6.19e-01 | 85.0% | 69.4% |
| 3vfzB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.84 | 72.0 | 7.11e-01 | 93.3% | 93.7% |
| 4go1A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.84 | 64.0 | 6.69e-01 | 80.0% | 88.9% |
| 5y2vC01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.83 | 57.0 | 5.04e-01 | 73.3% | 50.6% |
| 2q0oA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.83 | 67.0 | 6.44e-01 | 86.7% | 89.6% |
| 6cc0A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.82 | 65.0 | 6.17e-01 | 85.0% | 81.4% |
| 6jqsA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.82 | 66.0 | 6.36e-01 | 86.7% | 85.1% |
| 5xe7A01 | 1.20.140.160 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain | 0.81 | 60.0 | 4.45e-01 | 78.3% | 54.2% |
| 4a0zA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.80 | 54.0 | 5.49e-01 | 70.0% | 72.9% |
| 5z4zC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.80 | 59.0 | 5.16e-01 | 78.3% | 53.4% |
| 2esnA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.80 | 61.0 | 5.32e-01 | 85.0% | 55.1% |
| 2w7nA00 | 1.10.10.2690 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.80 | 68.0 | 5.87e-01 | 98.3% | 60.6% |
| 1p4wA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.79 | 61.0 | 5.33e-01 | 81.7% | 56.3% |
| 1j1vA00 | 1.10.1750.10 | Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain | 0.79 | 64.0 | 5.43e-01 | 86.7% | 70.2% |
| 3hhgE01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.79 | 58.0 | 5.08e-01 | 81.7% | 53.4% |
| 1tc3C00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.78 | 53.0 | 5.64e-01 | 71.7% | 82.4% |
| 2r0qC02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.77 | 53.0 | 5.52e-01 | 71.7% | 87.3% |
| 1l3lA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.77 | 60.0 | 5.97e-01 | 85.0% | 88.9% |
| 5i1uA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.76 | 55.0 | 3.48e-01 | 76.7% | 34.3% |
| 6sdkA01 | 1.10.10.2830 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.76 | 54.0 | 4.58e-01 | 81.7% | 46.4% |
| 6s6hA01 | 1.10.10.2830 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.76 | 54.0 | 4.41e-01 | 81.7% | 41.3% |
| 4pcqA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.76 | 53.0 | 5.85e-01 | 78.3% | 88.0% |
| 3tgnB02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.75 | 53.0 | 5.28e-01 | 75.0% | 71.4% |
| 1on2A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.75 | 54.0 | 5.12e-01 | 76.7% | 69.4% |
| 2dbbB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.75 | 59.0 | 6.15e-01 | 85.0% | 92.7% |
| 3onqA03 | 1.10.10.2840 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PucR C-terminal helix-turn-helix domain | 0.73 | 56.0 | 4.34e-01 | 83.3% | 42.7% |
| 2ia0A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 55.0 | 5.81e-01 | 81.7% | 90.7% |
| 6rnzA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.73 | 47.0 | 4.54e-01 | 70.0% | 59.1% |
| 5eriA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 58.0 | 4.25e-01 | 86.7% | 46.4% |
| 2lvsA02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.72 | 47.0 | 5.01e-01 | 70.0% | 81.6% |
| 2a6cA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.71 | 49.0 | 4.55e-01 | 73.3% | 56.6% |
| 2cobA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.71 | 48.0 | 5.35e-01 | 70.0% | 95.5% |
| 5dukB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 51.0 | 4.91e-01 | 75.0% | 67.2% |
| 3gw2A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 53.0 | 4.58e-01 | 80.0% | 53.8% |
| 3zh9B03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.70 | 57.0 | 4.49e-01 | 90.0% | 46.0% |
| 4rocA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.70 | 54.0 | 4.53e-01 | 85.0% | 66.0% |
| 3cuoD00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 53.0 | 4.61e-01 | 83.3% | 57.4% |
| 3cecA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.69 | 60.0 | 5.17e-01 | 95.0% | 94.5% |
| 2o38A01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.69 | 48.0 | 4.76e-01 | 73.3% | 69.2% |
| 2m8gX00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.69 | 50.0 | 4.80e-01 | 76.7% | 67.1% |
| 4ijaA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 50.0 | 4.93e-01 | 76.7% | 74.6% |
| 2q0oC00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.69 | 55.0 | 4.83e-01 | 100.0% | 60.5% |
| 2rdpA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 55.0 | 4.21e-01 | 88.3% | 47.9% |
| 3ecoB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 54.0 | 4.23e-01 | 86.7% | 51.9% |
| 1z05A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 49.0 | 4.60e-01 | 76.7% | 62.5% |
| 3k9tA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 52.0 | 5.10e-01 | 83.3% | 75.8% |
| 2e18A00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.66 | 56.0 | 3.70e-01 | 95.0% | 82.4% |
| 7ymiZ01 | 1.10.287.740 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre | 0.66 | 49.0 | 5.03e-01 | 100.0% | 84.5% |
| 3rh2A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.66 | 52.0 | 3.65e-01 | 90.0% | 31.6% |
| 1sfxB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 53.0 | 4.54e-01 | 95.0% | 83.7% |
| 1u5eA01 | 6.10.250.220 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.65 | 47.0 | 4.92e-01 | 100.0% | 88.7% |
| 7vjmB01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.62 | 43.0 | 4.25e-01 | 78.3% | 67.2% |
| 3tklB01 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.62 | 52.0 | 5.14e-01 | 100.0% | 88.7% |
| 8dtqA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.61 | 53.0 | 4.74e-01 | 95.0% | 97.6% |
| 3bs3A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.61 | 46.0 | 4.62e-01 | 80.0% | 100.0% |
| 7ymiD01 | 1.20.85.10 | Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like | 0.58 | 51.0 | 3.67e-01 | 100.0% | 60.6% |
| 3fd9A03 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.58 | 52.0 | 4.88e-01 | 100.0% | 87.7% |
| 1b0nA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.57 | 43.0 | 3.60e-01 | 81.7% | 66.0% |
| 1qsdA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 47.0 | 3.92e-01 | 100.0% | 58.8% |
| 3g7dA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.50 | 41.0 | 3.72e-01 | 93.3% | 74.4% |
ECOD (100)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4947436 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.94 | 80.0 | 8.34e-01 | 90.0% | 98.2% |
| 4944726 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.93 | 81.0 | 8.20e-01 | 91.7% | 91.7% |
| 4997411 | 101.1.3.33 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › DUF134 | 0.93 | 83.0 | 7.37e-01 | 93.3% | 90.0% |
| 4197050 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.93 | 71.0 | 5.73e-01 | 80.0% | 45.7% |
| 2330636 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.93 | 72.0 | 7.70e-01 | 83.3% | 92.5% |
| 4945127 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.93 | 88.0 | 7.65e-01 | 100.0% | 70.6% |
| 4683276 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.93 | 79.0 | 6.55e-01 | 91.7% | 55.8% |
| 4202221 | 101.1.1.31 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 | 0.93 | 75.0 | 7.16e-01 | 86.7% | 75.0% |
| 4334910 | 101.1.1.107 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF134 | 0.92 | 81.0 | 6.17e-01 | 93.3% | 53.6% |
| 4244028 | 101.1.1.107 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF134 | 0.92 | 78.0 | 7.90e-01 | 90.0% | 90.0% |
| 3627888 | 101.1.1.64 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › tRNA_bind_2 | 0.92 | 84.0 | 6.44e-01 | 100.0% | 47.2% |
| 3943462 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.92 | 70.0 | 7.32e-01 | 81.7% | 87.3% |
| 5067053 | 101.1.2.879 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF134 | 0.92 | 81.0 | 7.65e-01 | 93.3% | 91.4% |
| 3969325 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.92 | 82.0 | 7.67e-01 | 93.3% | 80.0% |
| 4372550 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.91 | 82.0 | 7.00e-01 | 95.0% | 63.3% |
| 3987867 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.91 | 67.0 | 7.36e-01 | 78.3% | 92.0% |
| 4439853 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.91 | 84.0 | 7.85e-01 | 96.7% | 82.9% |
| 3967026 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.91 | 76.0 | 6.97e-01 | 88.3% | 70.7% |
| 4497189 | 101.1.1.31 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 | 0.91 | 76.0 | 7.43e-01 | 88.3% | 81.5% |
| 4146353 | 101.1.1.31 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 | 0.90 | 78.0 | 6.90e-01 | 90.0% | 67.5% |
| 4980028 | 101.1.2.879 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF134 | 0.90 | 81.0 | 7.22e-01 | 95.0% | 82.5% |
| 2817645 | 101.1.1.31 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 | 0.90 | 81.0 | 7.24e-01 | 98.3% | 71.2% |
| 4165188 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.90 | 82.0 | 7.17e-01 | 96.7% | 68.2% |
| 3284469 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.90 | 83.0 | 7.55e-01 | 96.7% | 77.3% |
| 3587471 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.90 | 79.0 | 6.00e-01 | 95.0% | 44.7% |
| 4663875 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.90 | 78.0 | 5.00e-01 | 91.7% | 22.9% |
| 4237551 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.90 | 84.0 | 7.05e-01 | 100.0% | 64.2% |
| 3281471 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.90 | 79.0 | 7.08e-01 | 93.3% | 70.0% |
| 4340270 | 101.1.2.5 ↗ | alpha arrays › HTH › HTH › winged helix domain › Crp | 0.90 | 63.0 | 7.28e-01 | 75.0% | 97.8% |
| 4534822 | 101.1.1.107 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF134 | 0.90 | 80.0 | 7.36e-01 | 95.0% | 90.7% |
| 3289947 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.90 | 74.0 | 6.60e-01 | 88.3% | 65.0% |
| 4270967 | 101.1.1.107 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF134 | 0.90 | 80.0 | 6.36e-01 | 95.0% | 54.5% |
| 4032673 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.89 | 76.0 | 4.87e-01 | 90.0% | 22.0% |
| 4944862 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.89 | 80.0 | 7.13e-01 | 95.0% | 85.0% |
| 3587755 | 101.1.1.31 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 | 0.89 | 75.0 | 5.63e-01 | 88.3% | 40.8% |
| 3973360 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.89 | 77.0 | 7.29e-01 | 91.7% | 78.6% |
| 4243530 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.89 | 75.0 | 7.33e-01 | 88.3% | 81.5% |
| 4520564 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.89 | 71.0 | 6.32e-01 | 83.3% | 80.0% |
| 4233279 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.89 | 77.0 | 4.89e-01 | 90.0% | 22.5% |
| 4388780 | 101.1.1.30 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 | 0.89 | 75.0 | 5.43e-01 | 88.3% | 36.6% |
| 3972713 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.89 | 77.0 | 6.45e-01 | 91.7% | 57.9% |
| 3971395 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.89 | 76.0 | 6.96e-01 | 90.0% | 72.0% |
| 3163616 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.89 | 80.0 | 6.69e-01 | 95.0% | 60.6% |
| 3971860 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.89 | 67.0 | 7.28e-01 | 80.0% | 96.0% |
| 4934485 | 101.1.1.107 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF134 | 0.89 | 79.0 | 7.29e-01 | 95.0% | 89.2% |
| 3973709 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.89 | 81.0 | 6.60e-01 | 98.3% | 59.0% |
| 3967748 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.89 | 76.0 | 6.59e-01 | 90.0% | 63.5% |
| 3961841 | 101.1.1.31 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 | 0.89 | 73.0 | 6.90e-01 | 86.7% | 74.3% |
| 4876274 | 101.1.1.31 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 | 0.88 | 72.0 | 7.11e-01 | 85.0% | 82.3% |
| 3972638 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.88 | 78.0 | 7.56e-01 | 93.3% | 86.2% |
| 3283863 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.88 | 79.0 | 6.73e-01 | 95.0% | 63.3% |
| 3959252 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.88 | 78.0 | 7.85e-01 | 96.7% | 93.3% |
| 2448404 | 101.1.1.31 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 | 0.88 | 80.0 | 8.09e-01 | 96.7% | 96.7% |
| 3573627 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.88 | 82.0 | 6.28e-01 | 100.0% | 84.0% |
| 3288090 | 101.1.1.31 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 | 0.88 | 78.0 | 7.34e-01 | 93.3% | 80.0% |
| 3282225 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.88 | 82.0 | 7.36e-01 | 100.0% | 76.2% |
| 3284011 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.88 | 77.0 | 7.30e-01 | 96.7% | 80.0% |
| 4577850 | 101.1.1.31 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 | 0.88 | 78.0 | 6.38e-01 | 95.0% | 56.6% |
| 3284461 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.88 | 76.0 | 4.84e-01 | 91.7% | 22.0% |
| 3288971 | 101.1.1.30 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 | 0.88 | 75.0 | 5.38e-01 | 90.0% | 36.0% |
| 3284051 | 101.1.1.31 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 | 0.88 | 74.0 | 7.16e-01 | 93.3% | 81.5% |
| 5064701 | 101.1.2.879 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF134 | 0.88 | 78.0 | 6.99e-01 | 95.0% | 75.0% |
| 4238054 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.87 | 76.0 | 4.83e-01 | 95.0% | 22.4% |
| 4303963 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.87 | 80.0 | 7.35e-01 | 98.3% | 78.7% |
| 3951829 | 101.1.1.31 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 | 0.87 | 79.0 | 6.92e-01 | 96.7% | 68.2% |
| 2464007 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.87 | 74.0 | 7.17e-01 | 90.0% | 81.8% |
| 4396640 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.87 | 78.0 | 6.02e-01 | 95.0% | 90.8% |
| None | — | 0.87 | 75.0 | 4.81e-01 | 95.0% | 22.4% | |
| 3977260 | 101.1.1.39 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Phage_antitermQ | 0.87 | 79.0 | 6.11e-01 | 96.7% | 48.3% |
| 3284984 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.87 | 76.0 | 4.85e-01 | 93.3% | 22.0% |
| 4160122 | 101.1.1.30 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 | 0.87 | 82.0 | 5.88e-01 | 100.0% | 40.0% |
| 3955987 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.87 | 78.0 | 6.57e-01 | 100.0% | 61.1% |
| 4279016 | 101.1.1.31 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 | 0.87 | 77.0 | 6.91e-01 | 96.7% | 71.2% |
| 4175748 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.87 | 77.0 | 6.88e-01 | 96.7% | 71.2% |
| None | — | 0.86 | 82.0 | 6.58e-01 | 100.0% | 86.7% | |
| 3286778 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.86 | 74.0 | 7.02e-01 | 95.0% | 78.6% |
| None | — | 0.86 | 82.0 | 6.48e-01 | 100.0% | 91.7% | |
| 4140444 | 101.1.1.26 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › UPF0122 | 0.86 | 82.0 | 6.47e-01 | 100.0% | 82.7% |
| None | — | 0.86 | 82.0 | 6.45e-01 | 100.0% | 54.5% | |
| 149489 | 101.1.1.95 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › PhyR_sigma-like | 0.86 | 75.0 | 6.70e-01 | 93.3% | 70.0% |
| 4486973 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.86 | 76.0 | 6.63e-01 | 95.0% | 67.1% |
| 3908306 | 101.1.1.101 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_40 | 0.86 | 64.0 | 6.40e-01 | 80.0% | 78.3% |
| 4148347 | 101.1.1.26 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › UPF0122 | 0.86 | 81.0 | 6.54e-01 | 100.0% | 57.7% |
| 3590541 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.86 | 68.0 | 4.73e-01 | 86.7% | 28.3% |
| 3291331 | 101.1.1.31 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 | 0.86 | 73.0 | 6.58e-01 | 95.0% | 68.8% |
| 3587538 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.85 | 72.0 | 6.89e-01 | 90.0% | 79.4% |
| 3971149 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.85 | 80.0 | 7.14e-01 | 100.0% | 75.0% |
| 4024517 | 101.1.1.64 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › tRNA_bind_2 | 0.85 | 77.0 | 6.07e-01 | 98.3% | 52.2% |
| 3279339 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.85 | 74.0 | 5.07e-01 | 95.0% | 30.3% |
| 4304581 | 101.1.1.26 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › UPF0122 | 0.85 | 79.0 | 6.66e-01 | 100.0% | 63.8% |
| 3284292 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.85 | 71.0 | 6.10e-01 | 90.0% | 97.8% |
| 3974736 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.84 | 75.0 | 6.53e-01 | 96.7% | 67.1% |
| 3989117 | 101.1.1.129 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_4 | 0.84 | 73.0 | 6.04e-01 | 93.3% | 72.0% |
| 4205790 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.84 | 78.0 | 6.99e-01 | 100.0% | 96.2% |
| 3959876 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.83 | 73.0 | 6.13e-01 | 96.7% | 58.0% |
| 1810916 | 101.1.1.71 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › KORA | 0.83 | 68.0 | 6.61e-01 | 90.0% | 81.5% |
| 5023952 | 101.1.2.888 ↗ | alpha arrays › HTH › HTH › winged helix domain › Sigma70_r4_2 | 0.83 | 69.0 | 6.52e-01 | 88.3% | 75.7% |
| 2813289 | 101.1.1.71 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › KORA | 0.82 | 71.0 | 5.97e-01 | 98.3% | 58.8% |
| 3961604 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.80 | 72.0 | 5.99e-01 | 98.3% | 90.0% |
| 3736326 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.76 | 56.0 | 5.52e-01 | 78.3% | 73.8% |