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JQ288021.1__AFB83827.1__SPN3UB_0041__00041

Bact-Vir

JQ288021.1__AFB83827.1__SPN3UB_0041__00041

Identity

Accession:
JQ288021 ↗
Kingdom:
phage

Quality

81.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-65
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1r8eA02 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.79 65.0 5.96e-01 100.0% 69.9%
2zhgA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.79 64.0 4.97e-01 100.0% 41.3%
3gpvA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.77 63.0 5.02e-01 100.0% 45.1%
3gp4B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.77 62.0 4.77e-01 100.0% 39.2%
5d8cA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.77 62.0 4.80e-01 100.0% 40.5%
3qaoA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.76 63.0 4.71e-01 100.0% 37.1%
3hh0A01 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.74 65.0 6.03e-01 100.0% 94.4%
4b43A01 1.10.10.2480 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.71 54.0 5.13e-01 100.0% 69.1%
5i41B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.70 62.0 5.87e-01 100.0% 97.0%
2jmlA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.66 56.0 5.07e-01 100.0% 81.5%
2vxzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 47.0 4.55e-01 87.5% 66.7%
4lhfA00 6.10.200.10 Special › Helix non-globular › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › Regulatory phage protein Cox 0.65 56.0 5.09e-01 100.0% 72.2%
3ez2A01 1.10.1660.30 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.65 55.0 5.22e-01 100.0% 80.0%
1y6uA01 3.90.105.50 Alpha Beta › Alpha-Beta Complex › Molybdopterin biosynthesis moea protein, domain 2 › 0.63 48.0 5.06e-01 96.4% 98.0%
2jt1A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 47.0 4.41e-01 87.5% 64.8%
5tjjA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 47.0 4.35e-01 94.6% 63.0%
2mkxA00 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.62 41.0 4.24e-01 96.4% 74.5%
5f7qC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 48.0 4.51e-01 87.5% 71.4%
4a6dA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 50.0 4.25e-01 98.2% 55.3%
3broD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 50.0 3.86e-01 98.2% 43.3%
2obpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 50.0 4.49e-01 100.0% 69.1%
1r1uB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 49.0 4.21e-01 98.2% 61.3%
6uvuA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 48.0 3.95e-01 98.2% 51.0%
5c8qB02 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.57 38.0 4.07e-01 96.4% 82.6%
4o5vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 44.0 4.20e-01 100.0% 70.4%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 49.0 4.10e-01 100.0% 58.0%
6psyA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.57 43.0 2.97e-01 87.5% 97.8%
1fp2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 47.0 3.94e-01 98.2% 55.2%
2rdpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 47.0 3.58e-01 100.0% 39.3%
3cuoD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 46.0 3.99e-01 98.2% 60.6%
3d8bB02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.55 42.0 3.76e-01 98.2% 57.3%
3lmmC04 1.10.10.2340 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.54 42.0 3.68e-01 87.5% 56.3%
5fo5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 45.0 3.96e-01 98.2% 68.2%
5trdA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 44.0 3.91e-01 100.0% 65.5%
3cuqA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 41.0 3.74e-01 92.9% 62.5%
2isyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 43.0 3.37e-01 100.0% 60.1%
5z4zC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 44.0 3.84e-01 100.0% 69.3%
3kjxD01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.51 38.0 3.78e-01 89.3% 75.4%
3e9lA02 1.20.80.40 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › Prp8 RNase H domain, fingers region 0.51 40.0 3.55e-01 98.2% 64.2%
6w9rB01 3.90.70.80 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.51 40.0 2.97e-01 89.3% 63.5%
2fwrA01 3.40.1170.30 Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › 0.51 32.0 3.25e-01 100.0% 61.4%
2mc3A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 42.0 3.59e-01 100.0% 59.2%
2i9dA00 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.50 36.0 2.51e-01 78.6% 84.0%
1x57A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.50 41.0 3.56e-01 91.1% 75.8%
ECOD (74)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3976864 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 1.00 96.0 8.48e-01 100.0% 74.7%
3285380 101.1.9.82 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.82 68.0 5.20e-01 100.0% 40.8%
3164271 101.1.9.136 alpha arrays › HTH › HTH › Putative DNA-binding domain › PF29765 0.78 70.0 6.65e-01 100.0% 87.7%
2876157 101.1.9.105 alpha arrays › HTH › HTH › Putative DNA-binding domain › PF30176 0.76 60.0 6.17e-01 100.0% 92.5%
2818084 101.1.9.22 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_54 0.73 62.0 5.06e-01 100.0% 51.0%
4991574 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 52.0 4.96e-01 87.5% 66.2%
3960386 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.72 64.0 6.26e-01 100.0% 95.0%
4008376 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.72 62.0 6.14e-01 100.0% 90.0%
3974460 101.1.9.82 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.72 64.0 4.87e-01 100.0% 50.8%
3274594 101.1.9.30 alpha arrays › HTH › HTH › Putative DNA-binding domain › Pescadillo_N 0.72 63.0 4.28e-01 100.0% 27.5%
4420911 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.71 63.0 4.75e-01 100.0% 48.1%
4158216 101.1.9.8 alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.70 53.0 5.23e-01 100.0% 78.3%
3588934 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.69 56.0 5.35e-01 100.0% 78.5%
5073620 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.69 59.0 5.72e-01 100.0% 86.2%
3976170 101.1.9.26 alpha arrays › HTH › HTH › Putative DNA-binding domain › YfeC-like 0.68 56.0 5.26e-01 100.0% 74.3%
4056248 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.66 57.0 4.34e-01 98.2% 40.7%
364451 101.1.9.22 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_54 0.66 56.0 4.69e-01 100.0% 54.4%
3948669 101.1.9.26 alpha arrays › HTH › HTH › Putative DNA-binding domain › YfeC-like 0.66 56.0 4.49e-01 100.0% 47.8%
3590852 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.65 56.0 4.74e-01 100.0% 57.9%
5057773 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 50.0 4.61e-01 94.6% 64.0%
5031483 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 55.0 4.07e-01 100.0% 36.1%
4961938 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.63 51.0 4.35e-01 94.6% 55.6%
3261110 101.15.1.0 alpha arrays › HTH › LysM domain › LysM domain 0.63 44.0 4.50e-01 96.4% 77.8%
3849756 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.63 50.0 4.54e-01 100.0% 65.3%
3978394 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 47.0 4.54e-01 92.9% 72.3%
3954543 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.61 51.0 3.88e-01 100.0% 37.8%
4962776 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.61 48.0 3.96e-01 94.6% 47.6%
3284858 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.60 50.0 4.06e-01 98.2% 48.2%
5040910 101.1.2.110 alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.60 52.0 4.66e-01 100.0% 70.0%
4954822 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.60 50.0 4.47e-01 100.0% 66.3%
5037318 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.60 49.0 4.39e-01 98.2% 63.9%
5003759 101.1.2.785 alpha arrays › HTH › HTH › winged helix domain › HTH_13 0.60 45.0 3.96e-01 92.9% 53.3%
3961816 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 43.0 4.61e-01 92.9% 95.6%
138578 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.59 51.0 4.33e-01 98.2% 58.3%
4967496 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 52.0 4.34e-01 100.0% 56.0%
4968989 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 45.0 4.05e-01 92.9% 57.6%
4941526 101.1.2.100 alpha arrays › HTH › HTH › winged helix domain › FeoC 0.59 41.0 4.21e-01 78.6% 78.2%
2647086 101.1.4.2 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › LacI 0.58 41.0 4.10e-01 73.2% 92.9%
4046680 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.58 50.0 4.18e-01 98.2% 61.0%
5060973 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.58 51.0 4.26e-01 98.2% 61.1%
5016733 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.58 49.0 4.06e-01 100.0% 51.8%
2725 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 50.0 4.49e-01 100.0% 69.1%
4927802 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 49.0 3.63e-01 100.0% 35.0%
3598369 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 44.0 3.60e-01 87.5% 47.8%
4961047 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.58 49.0 4.32e-01 98.2% 67.1%
3963899 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.57 49.0 4.36e-01 100.0% 65.9%
5042767 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 49.0 4.14e-01 98.2% 61.2%
1291586 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.57 48.0 3.69e-01 98.2% 41.7%
4991380 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 47.0 3.99e-01 98.2% 54.0%
5056461 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.57 46.0 3.97e-01 98.2% 55.8%
3951676 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.56 48.0 4.01e-01 98.2% 58.0%
3279731 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.56 48.0 4.13e-01 100.0% 58.9%
4032077 101.1.2.92 alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.56 48.0 4.36e-01 100.0% 78.8%
3741919 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.56 29.0 2.40e-01 100.0% 27.0%
3739278 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.56 42.0 4.12e-01 82.1% 76.7%
3589664 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.55 48.0 4.23e-01 100.0% 74.1%
4958659 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.55 47.0 4.11e-01 100.0% 63.3%
5006816 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.55 47.0 4.26e-01 100.0% 70.0%
4956921 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.55 47.0 4.20e-01 100.0% 68.2%
5078641 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.55 42.0 3.86e-01 92.9% 62.0%
4929096 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.55 46.0 4.00e-01 100.0% 58.9%
4963272 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 46.0 3.91e-01 100.0% 56.0%
5012277 101.1.2.904 alpha arrays › HTH › HTH › winged helix domain › HTH_38 0.55 47.0 4.32e-01 100.0% 77.3%
4945999 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 41.0 3.60e-01 82.1% 68.2%
3970713 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 46.0 4.12e-01 100.0% 74.1%
3993742 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.54 38.0 2.95e-01 80.4% 31.9%
5010782 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 45.0 3.76e-01 100.0% 56.2%
3413561 101.1.2.248 alpha arrays › HTH › HTH › winged helix domain › DUF4777 0.52 38.0 3.18e-01 80.4% 51.4%
4998856 101.1.2.785 alpha arrays › HTH › HTH › winged helix domain › HTH_13 0.52 44.0 3.93e-01 100.0% 71.8%
5053936 101.1.2.530 alpha arrays › HTH › HTH › winged helix domain › HVO_A0114 0.52 43.0 3.46e-01 100.0% 44.8%
5074576 101.1.2.927 alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.51 43.0 3.75e-01 100.0% 60.0%
3398316 101.1.2.248 alpha arrays › HTH › HTH › winged helix domain › DUF4777 0.51 37.0 3.28e-01 78.6% 67.1%
4879387 101.1.2.66 alpha arrays › HTH › HTH › winged helix domain › Mga 0.51 45.0 3.99e-01 100.0% 74.4%
1761875 101.1.2.66 alpha arrays › HTH › HTH › winged helix domain › Mga 0.50 44.0 3.91e-01 100.0% 71.6%