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JQ312117.1__AFH19735.1__7-7-1_00037__00037

Bact-Vir

JQ312117.1__AFH19735.1__7-7-1_00037__00037

Identity

Accession:
JQ312117 ↗
Kingdom:
phage

Quality

74.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-40
PDB
Domain cluster: representative
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1bihA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.78 64.0 4.65e-01 92.3% 70.8%
1krlA00 6.20.50.130 Special › Other non-globular › N-terminal domain of TfIIb › 0.76 55.0 5.38e-01 79.5% 81.8%
2gu3A02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.74 60.0 5.27e-01 97.4% 63.5%
2v43A01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.73 61.0 3.97e-01 100.0% 23.5%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.72 62.0 5.85e-01 100.0% 95.8%
4fwwA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.71 59.0 3.37e-01 100.0% 18.8%
2w38A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.70 60.0 3.55e-01 100.0% 12.4%
7byjA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.70 58.0 4.49e-01 100.0% 44.2%
6bm0A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.69 59.0 3.41e-01 100.0% 10.5%
8ediA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 54.0 4.06e-01 94.9% 75.0%
4p78C00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.67 52.0 4.57e-01 94.9% 59.1%
3pv7A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 53.0 4.13e-01 94.9% 84.0%
1df0A02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.66 52.0 4.20e-01 100.0% 42.4%
1x0tA02 6.20.50.20 Special › Other non-globular › N-terminal domain of TfIIb › 0.66 51.0 4.96e-01 89.7% 97.8%
2kheA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.66 54.0 4.18e-01 100.0% 41.6%
3dcxA00 2.30.29.50 Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain 0.65 50.0 3.78e-01 92.3% 50.4%
2i06A01 3.50.14.10 Alpha Beta › 3-Layer(bba) Sandwich › Replication Terminator Protein (Tus); Chain A, domain 1 › Replication terminator Tus, domain 1 superfamily/Replication terminator Tus 0.65 52.0 3.36e-01 97.4% 73.8%
4n6tA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 53.0 4.40e-01 100.0% 54.4%
2r41A00 3.10.450.150 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein 0.65 48.0 3.75e-01 89.7% 71.8%
4hz9B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 54.0 3.88e-01 100.0% 33.3%
2c9kA03 2.100.10.10 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain 0.64 50.0 3.32e-01 97.4% 39.0%
2qrdB01 2.20.25.290 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.63 42.0 4.34e-01 71.8% 81.1%
4m1xD00 3.30.1360.240 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.63 51.0 4.33e-01 100.0% 87.5%
5jozA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.63 52.0 3.12e-01 100.0% 25.9%
3t0pA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.63 48.0 3.23e-01 100.0% 56.0%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.62 50.0 3.72e-01 94.9% 37.2%
5i4dA02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 45.0 3.81e-01 87.2% 48.7%
2v8qB00 6.20.250.60 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.61 42.0 3.45e-01 71.8% 41.1%
3eweA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 50.0 3.11e-01 100.0% 14.9%
3ci0K01 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.60 49.0 3.72e-01 94.9% 43.3%
5c5cA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.60 51.0 3.39e-01 100.0% 42.1%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.60 44.0 3.83e-01 87.2% 52.1%
1zkpC00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.59 42.0 2.71e-01 87.2% 15.5%
1njhA00 2.70.180.10 Mainly Beta › Distorted Sandwich › Protein Yojf; Chain: A; › Hypothetical protein YojF 0.58 46.0 3.58e-01 100.0% 54.6%
1oxxK02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 40.0 3.99e-01 79.5% 73.3%
3ossC00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.58 41.0 3.76e-01 97.4% 52.3%
3lbfA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 48.0 3.05e-01 100.0% 25.6%
1jyaB00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.57 45.0 3.39e-01 100.0% 56.2%
2qlvB02 2.20.25.290 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.57 39.0 4.01e-01 79.5% 92.1%
3f3fD01 2.20.25.500 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.57 43.0 4.09e-01 92.3% 74.5%
2a6aB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 38.0 2.80e-01 76.9% 22.7%
1dxkA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.56 45.0 2.93e-01 100.0% 18.1%
4feuF01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 42.0 3.55e-01 87.2% 89.0%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 41.0 3.78e-01 94.9% 65.0%
6w0pA02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.55 46.0 2.67e-01 100.0% 99.1%
1t6aA02 3.30.310.120 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein 0.54 42.0 3.56e-01 94.9% 50.0%
4ci8A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 39.0 2.47e-01 100.0% 22.0%
2c9oB02 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.54 38.0 3.00e-01 89.7% 62.8%
2m7oA00 3.10.450.400 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Uncharacterised protein PF15513, DUF4651 0.53 42.0 3.60e-01 100.0% 52.9%
3i9v700 3.30.920.80 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › NADH-quinone oxidoreductase, subunit 15 0.53 40.0 3.04e-01 94.9% 64.6%
3uxuA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.53 43.0 3.00e-01 100.0% 54.7%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 38.0 3.81e-01 94.9% 91.5%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 38.0 3.61e-01 94.9% 75.4%
2lmcB00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.51 36.0 3.33e-01 82.1% 52.5%
1t6lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.51 34.0 2.32e-01 89.7% 16.5%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3782385 5.1.4.78 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › TFIIIC_delta 0.81 67.0 3.75e-01 100.0% 8.2%
3517106 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.81 66.0 3.82e-01 100.0% 11.1%
3500446 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.81 67.0 3.88e-01 100.0% 11.4%
3615642 512.1.1.0 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.76 66.0 5.58e-01 100.0% 63.1%
3575357 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.74 63.0 3.65e-01 100.0% 11.0%
3592742 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.73 62.0 4.80e-01 100.0% 58.9%
3436743 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.72 62.0 3.65e-01 100.0% 15.3%
5012352 4312.1.1.15 a+b two layers › RelE-like › RelE-like › RelE-like › DUF4258 0.70 60.0 4.71e-01 100.0% 45.9%
3993651 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.70 59.0 3.59e-01 100.0% 13.7%
3783916 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 57.0 5.17e-01 94.9% 80.0%
5021755 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.70 56.0 3.39e-01 100.0% 19.7%
4977068 375.1.1.26 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.68 53.0 3.97e-01 89.7% 42.3%
3932751 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.68 54.0 3.79e-01 94.9% 27.7%
4348606 4.1.1.440 beta barrels › SH3 › SH3 › SH3 › PF27165 0.67 55.0 4.77e-01 97.4% 58.5%
3702040 11.1.7.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › PEBP-like 0.67 55.0 4.01e-01 100.0% 64.0%
3578918 331.3.1.3 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.67 45.0 3.17e-01 71.8% 28.9%
5043972 375.1.1.26 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.65 52.0 3.96e-01 92.3% 45.5%
3789110 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.65 50.0 2.95e-01 100.0% 19.5%
5082652 5.1.10.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.65 55.0 3.90e-01 100.0% 34.4%
4982529 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 50.0 4.71e-01 92.3% 94.0%
5006845 295.1.1.27 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PF25991 0.64 51.0 4.67e-01 100.0% 67.3%
3341415 11.1.5.80 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › TRAP_beta 0.64 49.0 3.47e-01 94.9% 54.4%
3595571 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 51.0 4.03e-01 92.3% 78.9%
4948056 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 50.0 3.89e-01 92.3% 45.0%
5027088 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 47.0 3.30e-01 82.1% 61.5%
5033075 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 47.0 4.42e-01 97.4% 65.5%
3531356 5.1.5.192 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, WD40_MABP1-WDR62_2nd 0.62 50.0 2.92e-01 100.0% 25.8%
5042559 11.1.1.80 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TRAP_beta 0.62 46.0 3.57e-01 94.9% 69.1%
4972785 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 49.0 4.69e-01 97.4% 89.8%
3990974 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 45.0 4.26e-01 97.4% 68.0%
4940436 3414.1.1.0 beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein 0.61 49.0 3.93e-01 100.0% 50.0%
3781182 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 45.0 2.61e-01 100.0% 8.0%
1125751 4086.1.1.1 a+b two layers › AMPKBI-like › AMPKBI-like › AMPKBI-like › AMPKBI 0.60 41.0 3.21e-01 71.8% 34.1%
4797405 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.60 40.0 4.21e-01 71.8% 100.0%
3227659 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.60 44.0 3.58e-01 89.7% 66.7%
3964837 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.59 48.0 4.04e-01 100.0% 52.0%
4192943 2003.1.2.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox 0.56 42.0 3.23e-01 100.0% 88.0%
5018514 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 41.0 3.09e-01 100.0% 91.9%
5002092 283.2.1.0 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like 0.54 42.0 3.46e-01 100.0% 51.1%
4196888 5.1.4.327 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, WD40_MABP1-WDR62_2nd 0.54 40.0 2.43e-01 100.0% 9.9%
3295376 4.26.1.0 beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 0.53 40.0 4.13e-01 87.2% 97.1%
3933015 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 43.0 4.10e-01 100.0% 79.6%
4954529 3335.1.1.0 beta barrels › Handle domain in transferrin-binding protein B › Handle domain in transferrin-binding protein B › Handle domain in transferrin-binding protein B 0.53 39.0 3.61e-01 94.9% 90.0%
2392242 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.52 40.0 3.10e-01 94.9% 33.6%
3912111 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.52 41.0 3.14e-01 100.0% 48.7%
3596265 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 36.0 3.05e-01 97.4% 61.0%