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JQ312117.1__AFH19770.1__7-7-1_00072__00072

Bact-Vir

JQ312117.1__AFH19770.1__7-7-1_00072__00072

Identity

Accession:
JQ312117 ↗
Kingdom:
phage

Quality

72.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-59
PDB
Domain cluster: representative
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.78 59.0 5.65e-01 87.7% 71.2%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.71 56.0 3.94e-01 87.7% 36.7%
2xqyA03 2.60.40.3190 Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain 0.69 59.0 4.61e-01 100.0% 42.9%
1ca1A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.69 63.0 4.86e-01 100.0% 83.3%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.69 59.0 4.33e-01 100.0% 94.0%
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.69 60.0 5.48e-01 100.0% 75.0%
1ap8A00 3.30.760.10 Alpha Beta › 2-Layer Sandwich › RNA Cap, Translation Initiation Factor Eif4e › RNA Cap, Translation Initiation Factor Eif4e 0.67 58.0 3.98e-01 100.0% 53.5%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.67 57.0 4.95e-01 100.0% 96.7%
1wh2A01 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.66 51.0 5.05e-01 96.5% 78.7%
6rarI01 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.65 54.0 3.82e-01 98.2% 92.8%
4limA00 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.64 55.0 3.37e-01 100.0% 73.8%
2jvuA00 2.60.40.2290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 49.0 4.12e-01 86.0% 49.0%
6rptC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 56.0 4.49e-01 100.0% 59.8%
3mfiA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.63 51.0 3.98e-01 87.7% 53.8%
3in6A02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 54.0 4.35e-01 100.0% 60.7%
3bh1A03 3.40.140.40 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Domain of unknown function (DUF1846), C-terminal subdomain 0.62 53.0 4.02e-01 100.0% 84.2%
1dgsA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.62 51.0 4.39e-01 94.7% 72.6%
1jx4A04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.62 49.0 4.10e-01 86.0% 57.1%
3nd1A02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.62 47.0 3.84e-01 86.0% 43.6%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.61 49.0 3.98e-01 87.7% 48.6%
2m6pA00 2.20.28.270 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › RNA polymerase-binding protein A 0.61 42.0 4.56e-01 98.2% 89.1%
4xuoA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.61 49.0 3.57e-01 87.7% 55.8%
2mv2A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.61 50.0 3.88e-01 100.0% 48.6%
1mg7A01 3.30.70.1000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Switch protein XOL-1, GHMP-like 0.60 49.0 3.67e-01 100.0% 81.7%
2fhqA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 51.0 3.97e-01 100.0% 48.9%
1txkA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.60 52.0 3.18e-01 100.0% 22.1%
2fg9A01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 50.0 3.76e-01 100.0% 48.4%
2hlcA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 50.0 4.21e-01 100.0% 55.8%
1ywlA00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.58 47.0 3.98e-01 91.2% 85.4%
1dyoA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 46.0 3.41e-01 89.5% 57.1%
1ehiA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.57 48.0 3.70e-01 100.0% 67.4%
6dgiA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.57 49.0 3.70e-01 100.0% 66.0%
2vfrA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.56 39.0 3.03e-01 86.0% 32.3%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.56 43.0 3.72e-01 86.0% 71.0%
1wmhB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 47.0 4.25e-01 100.0% 93.9%
3gd0A01 2.60.110.10 Mainly Beta › Sandwich › Thaumatin › Thaumatin 0.55 45.0 2.89e-01 87.7% 44.0%
2fb7A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 45.0 4.04e-01 93.0% 92.5%
2bkfA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 46.0 4.17e-01 100.0% 95.2%
3loiA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 49.0 3.49e-01 100.0% 40.6%
4ruvA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 40.0 3.38e-01 84.2% 53.8%
3wqbA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 42.0 3.04e-01 87.7% 32.5%
2piaA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 41.0 3.46e-01 87.7% 60.6%
5j7dC00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 37.0 3.13e-01 77.2% 91.5%
1wmhA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 44.0 3.99e-01 100.0% 97.6%
3kzqA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 42.0 3.00e-01 96.5% 52.4%
1iyjB03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 43.0 3.25e-01 93.0% 38.7%
1nw2A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 38.0 3.29e-01 84.2% 55.2%
2j4xA01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.52 41.0 3.44e-01 100.0% 80.6%
1r26A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 38.0 3.17e-01 84.2% 51.3%
5owvD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 40.0 2.87e-01 96.5% 84.7%
6i1cA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 37.0 3.19e-01 84.2% 55.6%
4j56E00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 37.0 3.20e-01 84.2% 48.6%
4tveA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 37.0 3.12e-01 86.0% 55.6%
2o2zA00 3.40.50.10680 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CofD-like domains 0.51 41.0 2.71e-01 100.0% 75.2%
3tcoA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.50 37.0 3.21e-01 86.0% 53.8%
1w4vA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.50 36.0 3.13e-01 84.2% 55.5%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4632256 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 57.0 5.20e-01 84.2% 96.0%
3289401 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.71 62.0 4.78e-01 100.0% 50.8%
3706132 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.70 62.0 5.42e-01 98.2% 98.8%
3936869 304.8.1.72 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › SCVP 0.70 60.0 5.07e-01 100.0% 99.0%
4966263 304.110.1.1 a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › Acylphosphatase 0.69 55.0 4.36e-01 87.7% 67.8%
3613410 304.11.1.0 a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase 0.69 59.0 5.26e-01 100.0% 97.6%
5010624 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 61.0 4.30e-01 100.0% 35.1%
3972650 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.68 59.0 4.82e-01 100.0% 99.1%
3940836 304.8.1.72 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › SCVP 0.68 59.0 4.87e-01 100.0% 98.1%
3399617 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.67 52.0 4.43e-01 100.0% 52.2%
5017559 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 50.0 4.88e-01 82.5% 100.0%
3721580 4121.1.1.0 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.67 60.0 3.78e-01 100.0% 47.4%
3395224 11.1.1.179 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.66 55.0 4.65e-01 100.0% 55.8%
2870324 4012.3.1.1 a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 › Cas9_PI 0.66 51.0 5.11e-01 86.0% 93.1%
3959955 304.163.1.3 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › PF31118 0.64 47.0 5.14e-01 87.7% 100.0%
3615237 4121.1.1.0 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.63 54.0 3.38e-01 100.0% 43.1%
4647537 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.63 51.0 4.10e-01 87.7% 47.3%
3704667 4121.1.1.0 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.63 55.0 3.42e-01 100.0% 59.1%
3607227 4012.3.1.0 a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 0.63 47.0 4.92e-01 80.7% 98.0%
4933926 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 54.0 4.42e-01 100.0% 63.6%
3907395 11.1.1.3 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig 0.62 54.0 4.55e-01 100.0% 63.0%
5081134 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.61 51.0 5.10e-01 100.0% 93.3%
3477039 224.1.1.1 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.61 52.0 4.03e-01 100.0% 55.6%
3929781 11.1.1.813 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › INTS4_C 0.60 52.0 3.95e-01 100.0% 65.5%
3606454 4357.1.1.0 beta barrels › WWE domain › WWE domain › WWE domain 0.60 44.0 4.32e-01 82.5% 100.0%
4158495 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.59 47.0 4.11e-01 89.5% 88.9%
3746817 4357.1.1.1 beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.59 45.0 4.22e-01 87.7% 97.3%
4623707 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.59 47.0 4.00e-01 89.5% 88.4%
5019243 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.59 51.0 3.66e-01 100.0% 67.6%
3312688 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.58 52.0 4.25e-01 100.0% 61.0%
3890381 4357.1.1.1 beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.58 44.0 4.08e-01 87.7% 91.3%
3637444 4121.1.1.0 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.58 47.0 3.22e-01 100.0% 52.5%
3216210 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.58 43.0 4.49e-01 86.0% 94.0%
4669741 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.57 45.0 3.90e-01 89.5% 82.1%
4397568 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.57 45.0 3.98e-01 89.5% 88.9%
4557537 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.57 50.0 4.32e-01 100.0% 93.3%
3595048 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 44.0 3.00e-01 94.7% 46.3%
3611249 230.4.1.0 a+b two layers › T-fold › ApbE-like › ApbE-like 0.54 46.0 3.29e-01 100.0% 78.9%
3971569 821.1.1.0 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.54 45.0 4.02e-01 96.5% 95.3%
3670198 221.1.1.4 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.53 40.0 3.40e-01 87.7% 46.7%
4031792 2004.1.1.36 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynamin_N 0.53 46.0 3.12e-01 100.0% 27.8%
4988132 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.52 37.0 3.22e-01 82.5% 55.2%
4028716 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.52 44.0 3.39e-01 98.2% 62.2%
3835677 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.51 38.0 3.18e-01 86.0% 51.3%
3972199 210.2.1.3 a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C_2 0.51 39.0 2.70e-01 98.2% 57.9%
3342057 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.50 37.0 3.13e-01 86.0% 48.7%