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JQ312117.1AFH19786.17-7-1_00088__00088

Bact-Vir

JQ312117.1__AFH19786.1__7-7-1_00088__00088

Identity

Accession:: JQ312117 ↗
Kingdom:: phage

Quality

93.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schmittlotzvirus› Agrobacterium_phage_7-7-1

TaxID: 1161931

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-119

PDB

Domain cluster: representative

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2vixA03	1.20.1280.240	Mainly Alpha › Up-down Bundle › Monooxygenase ›	0.64	45.0	4.54e-01	100.0%	72.6%
1xl3C00	1.20.1280.80	Mainly Alpha › Up-down Bundle › Monooxygenase ›	0.63	41.0	4.62e-01	96.5%	83.5%
1y71A00	2.30.30.430	Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain	0.62	42.0	4.30e-01	99.1%	71.6%
2qmiA02	2.40.128.210	Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain	0.58	32.0	3.45e-01	74.8%	62.0%
3nqkA02	2.40.128.440	Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14274, DUF4361	0.54	38.0	3.40e-01	72.2%	70.6%
2lccA00	2.30.30.140	Mainly Beta › Roll › SH3 type barrels. ›	0.53	33.0	3.81e-01	94.8%	93.4%
2vf9A00	3.30.380.10	Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein	0.52	40.0	3.81e-01	80.0%	90.8%
6yfiB01	3.30.380.10	Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein	0.52	39.0	3.68e-01	78.3%	91.9%

ECOD (20)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
167231	532.2.1.4 ↗	alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains › MxiC_C	0.64	45.0	4.73e-01	100.0%	79.6%
4177200	4.1.1.3 ↗	beta barrels › SH3 › SH3 › SH3 › KOW	0.62	29.0	4.02e-01	97.4%	90.9%
552	4.1.1.61 ↗	beta barrels › SH3 › SH3 › SH3 › KapB	0.62	42.0	4.30e-01	99.1%	71.6%
3217770	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.62	34.0	3.67e-01	96.5%	61.0%
3841414	4.1.1.42 ↗	beta barrels › SH3 › SH3 › SH3 › Agenet	0.60	31.0	3.92e-01	100.0%	82.9%
1697185	532.2.1.3 ↗	alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains › TyeA	0.60	42.0	4.67e-01	99.1%	90.2%
3399367	9.2.1.5 ↗	beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › DUF7043	0.60	36.0	3.89e-01	71.3%	71.6%
3514556	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.58	31.0	3.83e-01	93.0%	84.3%
3619619	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.57	31.0	3.83e-01	93.0%	85.7%
3241890	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.57	34.0	3.68e-01	97.4%	68.0%
3246086	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.56	29.0	3.16e-01	93.9%	58.9%
1503651	4.1.1.42 ↗	beta barrels › SH3 › SH3 › SH3 › Agenet	0.53	30.0	3.51e-01	96.5%	78.8%
4114121	4.1.1.52 ↗	beta barrels › SH3 › SH3 › SH3 › ZapC_C	0.53	30.0	3.52e-01	100.0%	78.8%
3675511	4.1.1.75 ↗	beta barrels › SH3 › SH3 › SH3 › NdhS	0.53	31.0	3.63e-01	91.3%	82.5%
3601070	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.53	29.0	3.50e-01	97.4%	89.2%
3515143	4.1.1.34 ↗	beta barrels › SH3 › SH3 › SH3 › MBT	0.52	39.0	3.88e-01	100.0%	72.8%
3632407	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.52	36.0	3.60e-01	70.4%	78.6%
169039	265.1.1.1 ↗	a+b two layers › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › Levi_coat	0.52	40.0	3.81e-01	80.0%	90.8%
3514522	4.1.1.3 ↗	beta barrels › SH3 › SH3 › SH3 › KOW	0.52	33.0	3.88e-01	87.8%	97.3%
3706000	4.1.1.92 ↗	beta barrels › SH3 › SH3 › SH3 › SH3_9	0.50	32.0	3.81e-01	100.0%	98.7%