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JQ340774.2__AFB84058.1__X__00047

Bact-Vir

JQ340774.2__AFB84058.1__X__00047

Identity

Accession:
JQ340774 ↗
Kingdom:
phage

Quality

74.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-76
PDB
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4bwiB01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.76 67.0 4.93e-01 100.0% 87.0%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.74 53.0 4.58e-01 74.6% 67.0%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.73 52.0 4.47e-01 74.6% 65.1%
2e55A00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.71 44.0 3.10e-01 91.5% 21.2%
5aa5E00 1.10.645.10 Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B 0.69 53.0 3.14e-01 100.0% 10.6%
4dunA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.68 52.0 4.27e-01 81.7% 67.7%
2fyxA00 3.30.70.1290 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transposase IS200-like 0.67 50.0 4.14e-01 90.1% 43.8%
4wd1A02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.65 46.0 3.89e-01 76.1% 43.0%
2ebbA00 3.30.1360.20 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase 0.65 48.0 4.34e-01 80.3% 58.3%
4obuA01 3.90.1150.170 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.65 49.0 3.46e-01 93.0% 25.2%
3maeA00 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.64 51.0 3.58e-01 87.3% 70.5%
1iicA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.64 48.0 3.61e-01 80.3% 39.9%
4p1mB01 3.30.160.880 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Cell division protein ZapA protomer, N-terminal domain 0.64 39.0 4.80e-01 78.9% 97.8%
1xexB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.64 48.0 3.77e-01 83.1% 40.4%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 46.0 3.96e-01 74.6% 92.4%
3r7wB02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.63 48.0 4.10e-01 83.1% 95.8%
3oajA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.62 39.0 3.11e-01 81.7% 30.6%
4e1oA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.62 43.0 3.88e-01 81.7% 53.1%
3bt7A02 2.40.50.1070 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 45.0 3.64e-01 80.3% 40.7%
2m89A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.61 48.0 3.94e-01 87.3% 83.6%
3pf7B00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.61 54.0 3.25e-01 98.6% 30.0%
1rzmA01 3.30.70.1140 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phospho-2-dehydro-3-deoxyheptonate aldolase; domain 1 0.60 40.0 3.89e-01 74.6% 60.0%
5o5cB02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.60 44.0 3.65e-01 81.7% 43.0%
4i99A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 45.0 2.96e-01 81.7% 21.1%
1js3A03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.59 43.0 3.85e-01 80.3% 55.7%
4wjmA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.59 47.0 3.12e-01 88.7% 84.3%
1ktgA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.58 40.0 3.25e-01 71.8% 97.8%
1iugA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.58 38.0 3.36e-01 80.3% 44.1%
7xinA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.57 38.0 3.42e-01 71.8% 45.9%
6liuC02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.57 41.0 3.50e-01 80.3% 46.6%
4mtnA01 3.30.1480.10 Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain 0.56 41.0 3.80e-01 87.3% 60.0%
2kqrA01 3.30.1910.20 Alpha Beta › 2-Layer Sandwich › so0334 like fold › asparaginyl-tRNA synthetase, N-terminal domain 0.55 40.0 3.99e-01 77.5% 93.2%
1i5eA00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 44.0 3.16e-01 95.8% 29.8%
3ofgB00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.55 37.0 3.53e-01 74.6% 57.5%
1xdnA02 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.55 38.0 3.11e-01 76.1% 37.4%
3wx4A00 3.30.70.2770 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 43.0 4.04e-01 95.8% 68.4%
1u2eA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 41.0 2.76e-01 81.7% 31.8%
3njfA00 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.54 37.0 3.25e-01 73.2% 92.0%
3fehA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 44.0 3.68e-01 90.1% 68.5%
3a1jB00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.53 35.0 2.49e-01 84.5% 18.2%
2ecfA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.52 43.0 2.70e-01 94.4% 25.7%
2zihC00 1.10.3630.10 Mainly Alpha › Orthogonal Bundle › yeast vps74-n-term truncation variant fold › yeast vps74-n-term truncation variant domain like 0.52 39.0 2.67e-01 83.1% 38.4%
6fndA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.52 40.0 2.96e-01 91.5% 31.7%
5yjlC02 3.20.180.10 Alpha Beta › Alpha-Beta Barrel › Split barrel-like › PNP-oxidase-like 0.51 39.0 3.33e-01 80.3% 86.5%
4d10F01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.51 40.0 3.09e-01 90.1% 91.1%
3ie7A00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.51 37.0 2.46e-01 78.9% 78.3%
1itpA00 3.30.70.80 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 0.50 33.0 3.27e-01 71.8% 62.3%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3838659 5085.1.1.0 a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.76 55.0 3.41e-01 100.0% 13.8%
3542369 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.73 49.0 3.01e-01 100.0% 11.5%
4046575 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.70 52.0 4.46e-01 80.3% 73.0%
4991990 878.1.1.0 a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 0.69 53.0 4.72e-01 83.1% 74.0%
3521725 327.11.2.55 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › PF26774 0.68 50.0 4.80e-01 81.7% 71.8%
5054097 305.1.1.10 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › PF27806 0.67 50.0 4.75e-01 87.3% 67.1%
5055279 1075.1.2.0 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain 0.67 55.0 3.91e-01 88.7% 78.5%
3356481 386.1.1.117 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7028 0.67 40.0 3.80e-01 84.5% 50.6%
4991742 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.66 39.0 3.24e-01 90.1% 32.3%
3982740 5086.1.1.190 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › OEP 0.66 49.0 3.47e-01 77.5% 29.0%
3963057 323.1.1.5 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation 0.65 52.0 3.95e-01 85.9% 93.3%
3885988 604.5.1.0 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) 0.63 54.0 4.11e-01 100.0% 45.9%
3653236 3347.1.1.0 beta meanders › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 0.63 46.0 3.65e-01 80.3% 75.9%
4490186 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.63 56.0 3.57e-01 100.0% 49.9%
3880336 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.63 56.0 3.67e-01 100.0% 55.7%
4486660 323.1.1.5 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation 0.62 50.0 4.17e-01 85.9% 88.3%
3576255 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.62 44.0 3.83e-01 76.1% 67.8%
3907411 5001.1.1.111 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1, 7TM_GPCR_Srw 0.61 56.0 3.55e-01 100.0% 33.3%
4022175 2011.2.1.0 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like 0.60 42.0 3.06e-01 74.6% 24.9%
4877165 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.60 44.0 3.29e-01 76.1% 63.3%
3969599 873.1.1.7 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › Arabinose_bd 0.60 49.0 3.64e-01 93.0% 64.5%
3879591 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.60 53.0 3.47e-01 100.0% 53.2%
3511668 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.60 47.0 2.86e-01 98.6% 13.8%
3195236 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.60 46.0 4.28e-01 85.9% 65.6%
5070072 7528.1.1.1 a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › PGM_PMM_I 0.59 40.0 3.23e-01 70.4% 49.0%
4987228 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.59 47.0 3.69e-01 91.5% 71.0%
3261637 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.59 36.0 3.77e-01 78.9% 66.2%
5081645 7528.1.1.1 a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › PGM_PMM_I 0.59 40.0 3.33e-01 70.4% 80.0%
5083494 330.7.1.0 a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain 0.58 38.0 3.78e-01 77.5% 64.0%
3603448 3291.1.1.49 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › NFACT_N 0.58 52.0 3.92e-01 98.6% 92.1%
3898373 5001.1.1.3 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_2 0.58 51.0 3.45e-01 100.0% 37.5%
224157 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.58 38.0 3.48e-01 80.3% 49.5%
3989090 312.1.1.1 a+b three layers › HIT-like › HIT-related › HIT-related › GalP_UDP_transf 0.57 41.0 3.08e-01 76.1% 80.0%
4044734 6076.1.1.1 alpha arrays › Catalytic cysteine domain in ubiquitin-activating enzyme › Catalytic cysteine domain in ubiquitin-activating enzyme › Catalytic cysteine domain in ubiquitin-activating enzyme › UBA_E1_SCCH 0.57 33.0 2.66e-01 100.0% 26.2%
3993677 823.1.1.0 a+b two layers › Head-to-tail joining protein W, gpW › Head-to-tail joining protein W, gpW › Head-to-tail joining protein W, gpW 0.57 50.0 5.03e-01 97.2% 97.1%
5056596 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.57 44.0 2.89e-01 85.9% 21.5%
4957785 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.56 43.0 3.82e-01 85.9% 71.8%
4950221 101.1.2.143 alpha arrays › HTH › HTH › winged helix domain › HTH_34 0.56 43.0 3.72e-01 81.7% 91.7%
1170594 885.1.1.1 a+b complex topology › Transcription factor NusA, N-terminal domain › Transcription factor NusA, N-terminal domain › Transcription factor NusA, N-terminal domain › NusA_N 0.56 41.0 3.80e-01 87.3% 60.0%
5066982 5081.1.1.1 alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid 0.56 42.0 3.30e-01 98.6% 40.0%
3277086 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 37.0 3.38e-01 83.1% 50.5%
4978789 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 39.0 3.59e-01 74.6% 85.3%
4019036 304.3.1.15 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › PF31052 0.55 39.0 3.98e-01 88.7% 78.6%
3494759 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 33.0 2.86e-01 91.5% 35.7%
3722420 2008.1.1.143 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF7924 0.54 38.0 2.95e-01 73.2% 69.4%
4989946 873.1.1.0 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.53 39.0 3.45e-01 80.3% 60.9%
4791706 304.126.1.4 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I_N 0.53 35.0 3.48e-01 74.6% 64.9%
3628907 101.1.2.394 alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 0.53 43.0 2.44e-01 95.8% 22.5%
4539730 7558.1.1.0 a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase 0.53 43.0 3.03e-01 88.7% 75.5%
4946426 3241.1.1.0 alpha arrays › Golgi phosphoprotein 3 › Golgi phosphoprotein 3 › Golgi phosphoprotein 3 0.53 48.0 3.37e-01 100.0% 88.4%
4976098 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 37.0 3.75e-01 76.1% 98.6%
4971494 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 42.0 3.60e-01 91.5% 67.0%
1815422 566.1.1.3 alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Pneumo_ncap 0.51 44.0 3.10e-01 94.4% 43.7%
4979651 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 32.0 2.97e-01 76.1% 50.0%
5024966 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.51 43.0 3.41e-01 93.0% 96.5%
5036146 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 31.0 3.18e-01 81.7% 64.3%