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JQ341413.1__AFF27982.1__phiYS61_24__00025
Bact-VirJQ341413.1__AFF27982.1__phiYS61_24__00025
Identity
- Accession:
- JQ341413 ↗
- Kingdom:
- phage
Quality
47.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 214-289
Domain cluster:
representative
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3pcrA01 | 3.10.450.460 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain | 0.78 | 49.0 | 4.60e-01 | 82.9% | 52.1% |
| 8gzhC01 | 3.90.1110.10 | Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 | 0.73 | 47.0 | 3.51e-01 | 85.5% | 27.6% |
| 1cbiA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.71 | 55.0 | 4.58e-01 | 94.7% | 47.1% |
| 3kh8A02 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.67 | 47.0 | 3.90e-01 | 73.7% | 88.0% |
| 7ob9B01 | 3.90.1110.10 | Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 | 0.66 | 51.0 | 3.78e-01 | 88.2% | 32.8% |
| 2essA02 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.66 | 46.0 | 4.27e-01 | 73.7% | 90.9% |
| 2a0aA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.64 | 53.0 | 4.42e-01 | 98.7% | 52.7% |
| 4agiA00 | 2.120.10.70 | Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin | 0.62 | 55.0 | 3.66e-01 | 100.0% | 46.5% |
| 7snsB01 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.62 | 52.0 | 4.10e-01 | 93.4% | 63.0% |
| 2xstA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.61 | 49.0 | 3.94e-01 | 86.8% | 49.0% |
| 6i8xA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.61 | 54.0 | 4.34e-01 | 98.7% | 50.3% |
| 4gakA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.60 | 46.0 | 3.25e-01 | 82.9% | 89.6% |
| 3u7vA02 | 2.60.220.20 | Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › putative beta-Galactosidase from caulobacter crescentus | 0.60 | 43.0 | 3.50e-01 | 75.0% | 91.0% |
| 1ospO02 | 3.90.930.1 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › | 0.60 | 49.0 | 3.95e-01 | 98.7% | 46.6% |
| 1oh1A00 | 2.40.310.10 | Mainly Beta › Beta Barrel › Staphostatins › beta-Barrel protease inhibitors | 0.59 | 46.0 | 4.11e-01 | 84.2% | 94.5% |
| 1s4uX00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.59 | 52.0 | 3.40e-01 | 100.0% | 39.0% |
| 2jkbA02 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.59 | 52.0 | 3.36e-01 | 100.0% | 42.0% |
| 3s27B01 | 3.10.450.330 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 50.0 | 4.17e-01 | 93.4% | 59.4% |
| 6psyA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.59 | 48.0 | 3.49e-01 | 92.1% | 59.0% |
| 4rbnA01 | 3.10.450.330 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 47.0 | 3.96e-01 | 90.8% | 67.4% |
| 5tkyA04 | 2.60.34.10 | Mainly Beta › Sandwich › Substrate Binding Domain Of DNAk; Chain A, domain 1 › Substrate Binding Domain Of DNAk; Chain A, domain 1 | 0.57 | 46.0 | 4.07e-01 | 90.8% | 93.1% |
| 4fpwB00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.57 | 48.0 | 3.83e-01 | 98.7% | 45.3% |
| 2p4oA01 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.56 | 49.0 | 3.34e-01 | 100.0% | 45.2% |
| 8axiA01 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.56 | 48.0 | 3.18e-01 | 100.0% | 41.3% |
| 2xepB01 | 3.10.450.280 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 48.0 | 4.28e-01 | 100.0% | 86.0% |
| 3jcuO01 | 2.40.160.30 | Mainly Beta › Beta Barrel › Porin › Photosystem II, cytochrome c-550 precursor | 0.53 | 45.0 | 3.55e-01 | 98.7% | 76.1% |
| 3ifvC00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.53 | 43.0 | 3.13e-01 | 92.1% | 45.8% |
| 2ml5A00 | 3.10.450.410 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 41.0 | 3.32e-01 | 94.7% | 41.9% |
| 1aq3A00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.52 | 45.0 | 3.81e-01 | 97.4% | 83.7% |
| 5ighA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 45.0 | 4.32e-01 | 98.7% | 100.0% |
| 5ih0A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 44.0 | 4.21e-01 | 100.0% | 100.0% |
| 4kujA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 38.0 | 3.10e-01 | 80.3% | 98.7% |
| 4jpqA00 | 2.60.40.1190 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 46.0 | 3.30e-01 | 100.0% | 43.4% |
| 2a2jA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.50 | 45.0 | 3.30e-01 | 100.0% | 97.5% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4033339 | 520.1.1.2 ↗ | beta sandwiches › gp9 N-terminal domain-like › gp9 N-terminal domain-related › gp9 N-terminal domain-related › PF27308 | 0.81 | 75.0 | 7.19e-01 | 98.7% | 88.2% |
| 1097232 | 3180.1.1.1 ↗ | a+b two layers › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › EspG | 0.79 | 50.0 | 4.41e-01 | 82.9% | 45.8% |
| 4978331 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.78 | 51.0 | 5.35e-01 | 93.4% | 72.9% |
| 3404297 | 4.1.1.326 ↗ | beta barrels › SH3 › SH3 › SH3 › Chitin_bind_4 | 0.74 | 51.0 | 5.77e-01 | 85.5% | 98.2% |
| 4971247 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.72 | 50.0 | 4.93e-01 | 93.4% | 68.8% |
| 3739521 | 511.1.1.0 ↗ | beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain | 0.67 | 52.0 | 4.78e-01 | 84.2% | 91.0% |
| 3618896 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.66 | 51.0 | 5.52e-01 | 100.0% | 96.9% |
| 3785876 | 5.1.4.262 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_CAF1B_HIR1 | 0.62 | 55.0 | 3.49e-01 | 100.0% | 36.8% |
| 4626423 | 5.1.4.169 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd | 0.62 | 55.0 | 3.62e-01 | 100.0% | 39.7% |
| None | — | 0.62 | 48.0 | 3.09e-01 | 84.2% | 28.8% | |
| 3176175 | 5.1.4.250 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF2415 | 0.61 | 54.0 | 3.49e-01 | 100.0% | 32.3% |
| 3599747 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.61 | 55.0 | 3.58e-01 | 100.0% | 23.9% |
| 4025256 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.61 | 48.0 | 4.71e-01 | 81.6% | 87.5% |
| 3926057 | 5.1.5.75 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, ANAPC4_WD40 | 0.61 | 54.0 | 3.54e-01 | 100.0% | 41.3% |
| 3887495 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.60 | 42.0 | 3.69e-01 | 90.8% | 48.7% |
| 4643894 | 9.1.1.8 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › PA_decarbox | 0.59 | 50.0 | 3.95e-01 | 93.4% | 48.1% |
| 5055905 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.58 | 45.0 | 3.92e-01 | 88.2% | 55.7% |
| 4929578 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.57 | 44.0 | 3.77e-01 | 82.9% | 64.2% |
| 5009577 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.57 | 50.0 | 4.23e-01 | 98.7% | 60.8% |
| 3706524 | 5.1.2.33 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › BNR_3 | 0.56 | 48.0 | 3.31e-01 | 100.0% | 59.0% |
| 1724304 | 9.1.1.30 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › MoaF_like | 0.56 | 48.0 | 4.40e-01 | 98.7% | 78.6% |
| 3700781 | 3794.1.1.0 ↗ | a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit | 0.55 | 44.0 | 3.80e-01 | 92.1% | 75.4% |
| 5078569 | 5.1.3.274 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › ANAPC4_WD40 | 0.54 | 47.0 | 3.50e-01 | 100.0% | 60.0% |
| 3722817 | 206.1.1.11 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH | 0.54 | 48.0 | 3.06e-01 | 100.0% | 26.5% |
| 3837575 | 5.1.3.144 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like | 0.54 | 47.0 | 3.07e-01 | 100.0% | 25.8% |
| 3228776 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.54 | 45.0 | 3.06e-01 | 93.4% | 28.1% |
| 3693368 | 1205.2.1.1 ↗ | a+b two layers › C-terminal domain of CdiA toxin › C-terminal domain of P. aeruginosa CdiA › C-terminal domain of P. aeruginosa CdiA › PF31217 | 0.54 | 45.0 | 3.90e-01 | 90.8% | 100.0% |
| 3436240 | 5.1.4.550 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 | 0.54 | 46.0 | 3.11e-01 | 98.7% | 42.8% |
| 3363301 | 5.1.3.6 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 | 0.53 | 46.0 | 3.08e-01 | 98.7% | 42.2% |
| 3578208 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 33.0 | 3.67e-01 | 76.3% | 83.6% |
| 3788034 | 206.1.1.11 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH | 0.52 | 46.0 | 2.92e-01 | 100.0% | 30.7% |
| 3934097 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.51 | 46.0 | 3.76e-01 | 100.0% | 65.0% |
D2
medium
residues 304-418