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JQ341413.1__AFF27984.1__phiYS61_26__00027

Bact-Vir

JQ341413.1__AFF27984.1__phiYS61_26__00027

Identity

Accession:
JQ341413 ↗
Kingdom:
phage

Quality

65.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Weissella_phage_phiYS61

TaxID: 1161906

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 454-541
PDB
D2 high residues 554-652
PDB
D3 medium residues 3-106
PDB
D4 medium residues 114-127_306-425_439-451
PDB
Domain cluster: rep: MH356730.1__AWY02959.1__X__00104__D544-684
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 24.0 3.59e-01 70.1% 70.8%
3afcA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 51.0 3.50e-01 87.1% 96.9%
4n4bA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.61 53.0 4.14e-01 95.2% 98.1%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 27.0 3.69e-01 71.4% 83.3%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 25.0 3.42e-01 70.1% 73.7%
1gofA02 2.130.10.80 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Galactose oxidase/kelch, beta-propeller 0.60 53.0 3.89e-01 95.9% 100.0%
2vsmA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.58 48.0 3.47e-01 89.1% 50.8%
7bysA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.58 51.0 4.07e-01 96.6% 99.7%
3qc2B00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 50.0 3.78e-01 96.6% 97.5%
1sqjB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 47.0 3.34e-01 90.5% 42.3%
4mlgG00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 49.0 3.75e-01 94.6% 98.1%
6qp7A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 48.0 3.35e-01 94.6% 98.5%
5b4wA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 45.0 3.26e-01 89.8% 55.5%
3ottA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 45.0 3.50e-01 90.5% 99.7%
1x2jA00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.52 45.0 3.53e-01 90.5% 54.8%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 20.0 2.93e-01 77.6% 79.1%
2xepB01 3.10.450.280 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 34.0 3.78e-01 83.0% 86.0%
1q4tA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 38.0 3.87e-01 77.6% 96.5%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1519176 5.1.3.5 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › HN 0.62 52.0 3.71e-01 89.1% 54.0%
3487833 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.60 51.0 3.73e-01 90.5% 48.7%
3195635 5.1.3.69 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › TFIIIC_delta 0.59 50.0 3.44e-01 89.8% 50.4%
3707878 5.1.2.33 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › BNR_3 0.59 50.0 4.02e-01 90.5% 79.6%
3544903 5.1.4.13 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP 0.59 52.0 3.78e-01 97.3% 99.8%
4945010 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.59 49.0 3.73e-01 88.4% 55.8%
5010078 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 49.0 3.62e-01 89.8% 92.1%
5038660 5.1.3.22 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › GSDH 0.58 49.0 3.66e-01 89.1% 96.6%
3599911 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.58 48.0 3.74e-01 89.8% 46.5%
4580132 5.1.4.22 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MgpC 0.57 47.0 3.47e-01 88.4% 73.3%
3812766 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.56 26.0 3.68e-01 71.4% 91.4%
140636 5.1.4.12 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.56 46.0 3.47e-01 89.1% 50.4%
3638899 5.1.4.78 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › TFIIIC_delta 0.55 46.0 3.13e-01 89.8% 60.5%
3708150 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.55 46.0 3.43e-01 89.1% 54.1%
5081581 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.54 44.0 3.73e-01 88.4% 53.9%
3305160 5.1.5.185 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_RIC1_2nd 0.54 48.0 3.08e-01 100.0% 59.3%
4427264 5.1.4.139 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_2 0.53 48.0 3.37e-01 98.0% 97.6%
3559155 1020.1.1.63 ↗ extended segments › Ezh2 N-terminal domain › Ezh2 N-terminal domain › Ezh2 N-terminal domain › CATSPERG_beta-prop 0.53 45.0 3.21e-01 91.8% 70.5%
3497811 5.1.1.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed 0.53 43.0 4.18e-01 87.1% 95.2%
3739527 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 42.0 3.07e-01 83.7% 84.7%
3681619 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.52 44.0 3.57e-01 90.5% 48.5%
1196318 5.1.3.5 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › HN 0.52 46.0 3.27e-01 94.6% 94.3%
5035179 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.52 43.0 3.34e-01 90.5% 96.5%
3815146 5.1.4.550 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.51 43.0 3.38e-01 90.5% 48.4%
3536769 5.1.4.57 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PALB2_WD40 0.51 44.0 3.30e-01 95.2% 69.7%