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JQ341413.1__AFF28002.1__phiYS61_44__00045

Bact-Vir

JQ341413.1__AFF28002.1__phiYS61_44__00045

Identity

Accession:
JQ341413 ↗
Kingdom:
phage

Quality

93.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-68
PDB
Domain cluster: representative
CATH (57)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xtlA02 2.60.40.1140 Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain 0.70 49.0 4.31e-01 100.0% 48.5%
3cu7A05 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.69 48.0 4.10e-01 100.0% 45.3%
1svdM00 3.30.190.10 Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit 0.67 53.0 4.55e-01 100.0% 53.7%
3no8A00 2.60.120.820 Mainly Beta › Sandwich › Jelly Rolls › PHR domain 0.64 48.0 3.71e-01 100.0% 34.4%
3bgaA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 51.0 4.32e-01 100.0% 52.3%
3wnzA03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.63 49.0 3.84e-01 86.2% 79.9%
5dcaA08 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.63 51.0 4.29e-01 100.0% 52.7%
8alzB04 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.63 49.0 4.17e-01 100.0% 50.9%
2je8A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 52.0 4.54e-01 100.0% 59.8%
5m59A06 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.62 49.0 4.13e-01 100.0% 50.9%
2wq4A01 2.60.120.760 Mainly Beta › Sandwich › Jelly Rolls › 0.61 47.0 3.82e-01 100.0% 42.6%
1wspA00 2.40.240.130 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › 0.61 39.0 3.64e-01 100.0% 51.8%
2wadA02 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.61 43.0 3.36e-01 100.0% 33.1%
3o5yB00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.60 41.0 3.22e-01 72.3% 94.6%
4pxdA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 53.0 4.34e-01 96.9% 95.7%
3n5fA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 52.0 4.31e-01 96.9% 95.6%
2xepB02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.60 47.0 3.11e-01 84.6% 47.7%
1hp1A01 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.60 47.0 2.97e-01 84.6% 57.3%
3kysA00 2.70.50.80 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › 0.60 51.0 3.68e-01 100.0% 36.5%
2fhzA00 3.30.190.30 Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › 0.59 50.0 4.31e-01 95.4% 58.5%
3sd2A01 2.60.40.3080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 41.0 3.93e-01 100.0% 62.3%
3pv7A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 48.0 4.32e-01 100.0% 63.8%
3eipA00 3.10.50.20 Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein 0.59 52.0 4.80e-01 100.0% 95.2%
4j3vA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 45.0 3.89e-01 100.0% 53.3%
2je8A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 46.0 4.03e-01 100.0% 55.5%
3f8uB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 50.0 4.06e-01 100.0% 60.3%
2g2nC00 2.60.40.180 Mainly Beta › Sandwich › Immunoglobulin-like › Transthyretin/hydroxyisourate hydrolase domain 0.57 40.0 3.45e-01 100.0% 43.8%
1s7hA01 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 48.0 4.49e-01 92.3% 86.3%
2kl8A00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.57 48.0 4.44e-01 95.4% 90.6%
3omzA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 50.0 4.34e-01 100.0% 64.7%
4ewtA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 47.0 3.93e-01 93.8% 93.9%
1ca1A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.56 46.0 3.78e-01 100.0% 49.2%
3dpuB03 3.30.310.200 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.56 47.0 4.01e-01 95.4% 93.5%
2od4B01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 46.0 4.28e-01 96.9% 98.9%
2qqkA02 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.55 37.0 3.16e-01 100.0% 39.1%
5uejA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 47.0 3.89e-01 93.8% 93.9%
3df7A02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.55 42.0 3.30e-01 81.5% 64.2%
2od6C00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 46.0 4.03e-01 100.0% 94.4%
3dfeA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 47.0 4.41e-01 100.0% 95.1%
4mt1A07 3.30.70.1440 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.54 46.0 4.06e-01 98.5% 92.2%
1u8sA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.54 46.0 4.25e-01 96.9% 94.2%
3orqA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.54 41.0 2.99e-01 87.7% 50.2%
2v72A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 38.0 3.09e-01 100.0% 35.8%
3x17A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 40.0 3.60e-01 98.5% 54.9%
3p96A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.53 46.0 4.26e-01 98.5% 97.6%
3shsA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 40.0 3.30e-01 100.0% 43.9%
1vq8B03 3.30.1430.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L3; Chain: B; domain 2, › 0.53 45.0 3.87e-01 100.0% 59.5%
2j3wC00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.53 39.0 3.15e-01 81.5% 45.9%
2op5B01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 44.0 3.94e-01 100.0% 100.0%
2nyiA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.52 44.0 4.01e-01 96.9% 94.4%
1u8sA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.52 45.0 4.15e-01 98.5% 96.4%
2e56A00 2.60.40.770 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 43.0 3.49e-01 100.0% 48.6%
3w7bA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.52 43.0 3.96e-01 98.5% 97.7%
1vk8A00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 43.0 3.91e-01 98.5% 92.5%
1xhnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 43.0 3.27e-01 100.0% 38.0%
1hq6B00 3.50.20.10 Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Pyruvoyl-Dependent Histidine Decarboxylase, subunit B 0.51 42.0 3.03e-01 100.0% 35.5%
2zw2A00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.50 41.0 3.89e-01 100.0% 95.3%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3214302 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.73 66.0 5.40e-01 100.0% 60.0%
4864575 11.1.1.45 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Sec63 0.72 51.0 5.00e-01 100.0% 69.0%
5050918 2492.1.1.2 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.71 62.0 4.40e-01 100.0% 34.1%
3932826 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.71 57.0 4.49e-01 100.0% 41.4%
3584610 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.70 51.0 3.91e-01 100.0% 33.3%
3629740 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.70 58.0 5.03e-01 100.0% 59.0%
3993742 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.68 47.0 3.67e-01 72.3% 48.9%
4392559 3659.1.1.1 a+b two layers › MotY N-terminal domain › MotY N-terminal domain › MotY N-terminal domain › MotY_N 0.67 56.0 4.25e-01 100.0% 38.7%
4983416 11.1.1.103 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB 0.66 52.0 4.30e-01 100.0% 48.7%
4029036 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.66 58.0 5.24e-01 100.0% 74.4%
3933721 11.10.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.65 54.0 4.06e-01 100.0% 37.0%
3505613 11.1.1.236 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Mannosidase_ig 0.65 51.0 4.52e-01 100.0% 58.0%
3202618 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.65 56.0 4.53e-01 100.0% 51.5%
3289252 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.64 45.0 3.39e-01 73.8% 92.5%
4934192 2492.1.1.18 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.64 55.0 4.36e-01 100.0% 46.4%
5039260 11.1.1.1424 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7490 0.63 49.0 4.13e-01 100.0% 48.7%
5039097 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 46.0 3.97e-01 100.0% 48.2%
5027849 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 50.0 4.12e-01 100.0% 48.3%
3774377 11.1.1.877 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › A2M, MG2, A2M_BRD, MG4 0.62 47.0 2.75e-01 100.0% 8.7%
3479862 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 43.0 3.93e-01 100.0% 53.3%
3681799 223.1.1.3 a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.62 44.0 3.02e-01 75.4% 67.4%
5000329 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 53.0 4.62e-01 100.0% 61.9%
3261455 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.62 46.0 3.71e-01 100.0% 39.3%
3932886 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.60 52.0 4.64e-01 100.0% 100.0%
4973619 267.1.1.0 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.60 48.0 3.51e-01 86.2% 96.5%
3540637 11.1.1.1003 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26194 0.60 46.0 3.59e-01 100.0% 37.9%
3879556 10.2.1.0 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.59 49.0 3.62e-01 100.0% 33.2%
3713859 2492.1.1.2 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.58 50.0 3.48e-01 100.0% 27.6%
3450576 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 50.0 4.50e-01 100.0% 69.5%
1097213 10.9.1.2 beta sandwiches › jelly-roll › C-terminal domain of mullusc hemocyanin › C-terminal domain of mullusc hemocyanin › Haemocyan_bet_s 0.58 50.0 4.36e-01 100.0% 64.1%
5033320 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 48.0 4.09e-01 100.0% 56.4%
3605629 2492.1.1.2 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.57 48.0 3.50e-01 100.0% 32.8%
4778785 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.57 49.0 4.54e-01 96.9% 97.6%
5057156 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 43.0 3.76e-01 100.0% 50.4%
5014007 3115.2.1.0 a+b two layers › GP2-like › GP2 › GP2 0.57 41.0 4.34e-01 100.0% 92.7%
3512817 304.107.1.10 a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › BBS7_pf 0.56 48.0 3.83e-01 92.3% 70.4%
3472406 5.1.12.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › PERK and Ire1 luminal domains 0.56 46.0 2.97e-01 100.0% 19.7%
3270534 11.10.1.5 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.56 45.0 3.69e-01 100.0% 45.2%
5040671 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.56 46.0 4.15e-01 90.8% 90.0%
4996421 11.1.1.184 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Wzt_C 0.56 43.0 3.56e-01 100.0% 42.9%
4219489 304.6.1.3 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.56 47.0 3.14e-01 96.9% 35.6%
4642171 2492.1.1.0 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.55 45.0 3.35e-01 100.0% 31.9%
4931114 2484.1.1.38 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 0.55 46.0 3.92e-01 96.9% 81.7%
4997452 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.54 44.0 3.69e-01 95.4% 96.8%
3821464 5.1.12.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › PERK and Ire1 luminal domains 0.54 43.0 3.12e-01 93.8% 94.0%
4469838 10.32.1.215 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF29167 0.54 46.0 3.51e-01 100.0% 41.2%
1097215 10.9.1.2 beta sandwiches › jelly-roll › C-terminal domain of mullusc hemocyanin › C-terminal domain of mullusc hemocyanin › Haemocyan_bet_s 0.53 45.0 3.94e-01 100.0% 62.3%
3710400 73.1.1.1 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.53 45.0 3.51e-01 100.0% 98.7%
3929673 859.1.1.0 a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 0.53 46.0 3.54e-01 100.0% 55.6%
4195895 10.4.1.14 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › AGRB_N 0.52 37.0 2.80e-01 76.9% 79.4%
4443054 3115.1.1.9 a+b two layers › GP2-like › RplX-like › RplX-like › YjeJ 0.52 42.0 3.57e-01 100.0% 51.7%
4603561 304.14.1.1 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.52 43.0 4.15e-01 100.0% 96.2%
3791558 5.1.12.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › PERK and Ire1 luminal domains 0.52 43.0 2.79e-01 96.9% 69.8%
3574639 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.51 42.0 2.87e-01 98.5% 79.3%
3247147 5.1.12.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › PERK and Ire1 luminal domains 0.51 43.0 2.86e-01 98.5% 83.9%
3270927 11.10.1.6 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.50 40.0 3.35e-01 100.0% 45.7%
4022722 2492.1.1.50 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › SsdA_C 0.50 41.0 3.20e-01 100.0% 94.7%