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JQ362498.1__AFF28009.1__PAU_11__00004
Bact-VirJQ362498.1__AFF28009.1__PAU_11__00004
Identity
- Accession:
- JQ362498 ↗
- Kingdom:
- phage
Quality
69.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 9-60
D2
medium
residues 61-135
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1q1vA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.69 | 51.0 | 5.33e-01 | 89.3% | 85.7% |
| 2hszA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.67 | 51.0 | 5.10e-01 | 96.0% | 81.3% |
| 3d36B02 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.67 | 33.0 | 3.63e-01 | 77.3% | 59.0% |
| 1u84A00 | 1.10.340.20 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain | 0.66 | 59.0 | 5.75e-01 | 100.0% | 92.6% |
| 7z7vE01 | 1.10.10.1590 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E | 0.66 | 42.0 | 4.61e-01 | 78.7% | 81.7% |
| 5m43A00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.62 | 55.0 | 4.23e-01 | 98.7% | 66.7% |
| 3rq4A01 | 1.10.10.1700 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Histone-lysine N-methyltransferase | 0.62 | 49.0 | 4.60e-01 | 90.7% | 95.9% |
| 1gaxA05 | 1.10.287.380 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain | 0.60 | 33.0 | 3.39e-01 | 77.3% | 54.8% |
| 4uw9A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.59 | 44.0 | 4.27e-01 | 80.0% | 80.7% |
| 1yhuB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.59 | 48.0 | 3.92e-01 | 90.7% | 94.4% |
| 3h20A04 | 1.10.1240.50 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.59 | 43.0 | 4.11e-01 | 86.7% | 66.3% |
| 1d5rA01 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.58 | 53.0 | 4.00e-01 | 100.0% | 57.5% |
| 1txuA02 | 1.20.1050.80 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › VPS9 domain | 0.58 | 50.0 | 3.95e-01 | 97.3% | 50.6% |
| 2r44A03 | 1.10.8.80 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Magnesium chelatase subunit I, C-Terminal domain | 0.57 | 43.0 | 3.74e-01 | 81.3% | 78.0% |
| 3w4sA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.57 | 39.0 | 2.65e-01 | 70.7% | 81.0% |
| 3dd7C00 | 1.20.120.1870 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Fic/DOC protein, Fido domain | 0.56 | 45.0 | 3.91e-01 | 89.3% | 68.0% |
| 2q0iA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.56 | 49.0 | 3.33e-01 | 100.0% | 40.3% |
| 3wkyA02 | 1.10.1280.10 | Mainly Alpha › Orthogonal Bundle › di-copper center containing domain from catechol oxidase › Di-copper center containing domain from catechol oxidase | 0.55 | 46.0 | 3.23e-01 | 97.3% | 56.6% |
| 3p01A01 | 6.10.140.590 | Special › Helix non-globular › Helix Hairpins › | 0.54 | 41.0 | 3.98e-01 | 88.0% | 73.5% |
| 1v9mA02 | 1.20.1690.10 | Mainly Alpha › Up-down Bundle › V-type ATP synthase subunit C fold › V-type ATP synthase subunit C domain | 0.54 | 40.0 | 3.63e-01 | 78.7% | 80.2% |
| 3a06B03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.54 | 36.0 | 3.49e-01 | 70.7% | 94.3% |
| 3cqcB01 | 1.20.58.1380 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 37.0 | 3.53e-01 | 73.3% | 77.8% |
| 2pkeA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.53 | 45.0 | 4.47e-01 | 97.3% | 93.6% |
| 2b8iA00 | 1.20.1280.100 | Mainly Alpha › Up-down Bundle › Monooxygenase › Pas factor, saposin domain | 0.52 | 40.0 | 3.99e-01 | 86.7% | 81.8% |
| 1b8dA00 | 1.10.490.20 | Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins | 0.52 | 40.0 | 3.19e-01 | 85.3% | 78.7% |
| 2ynqB00 | 1.25.40.680 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type VII secretion system EssB, C-terminal-like domain | 0.52 | 36.0 | 2.87e-01 | 72.0% | 40.4% |
| 5xpyA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 43.0 | 3.87e-01 | 94.7% | 79.6% |
| 3ddhA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.52 | 44.0 | 4.37e-01 | 97.3% | 92.6% |
| 1mkiA02 | 1.10.1500.10 | Mainly Alpha › Orthogonal Bundle › Probable Glutaminase Ybgj; Chain: A, domain 2 › | 0.52 | 43.0 | 3.55e-01 | 93.3% | 92.0% |
| 3wirA02 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.51 | 35.0 | 2.27e-01 | 76.0% | 13.7% |
| 2gscC00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.50 | 44.0 | 3.95e-01 | 100.0% | 93.6% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 143247 | 592.2.1.1 ↗ | alpha arrays › PWI domain-like › YugE-like › YugE-like › DUF1871 | 0.67 | 59.0 | 5.78e-01 | 100.0% | 91.5% |
| 4520559 | 592.2.1.1 ↗ | alpha arrays › PWI domain-like › YugE-like › YugE-like › DUF1871 | 0.67 | 58.0 | 5.61e-01 | 98.7% | 88.2% |
| 4931982 | 6035.1.1.3 ↗ | alpha bundles › Primase helical domain › Primase helical domain › Primase helical domain › NrS1-1_pol-like_HBD | 0.65 | 47.0 | 4.69e-01 | 92.0% | 73.8% |
| 9874 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.65 | 50.0 | 3.62e-01 | 96.0% | 28.6% |
| 3182801 | 592.2.1.2 ↗ | alpha arrays › PWI domain-like › YugE-like › YugE-like › WGG | 0.64 | 56.0 | 4.69e-01 | 98.7% | 77.7% |
| 4009630 | 162.1.1.5 ↗ | alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PF30457 | 0.62 | 49.0 | 4.44e-01 | 85.3% | 98.0% |
| 3412839 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 48.0 | 4.84e-01 | 86.7% | 100.0% |
| 3706180 | 2007.2.3.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc | 0.62 | 55.0 | 3.75e-01 | 100.0% | 56.0% |
| 3398614 | 11.1.5.3 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › RHD_DNA_bind | 0.61 | 46.0 | 3.38e-01 | 80.0% | 48.0% |
| 5041402 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 46.0 | 4.83e-01 | 89.3% | 93.8% |
| 4025289 | 192.29.1.197 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF4110 | 0.61 | 45.0 | 4.30e-01 | 78.7% | 68.2% |
| 4956641 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.61 | 48.0 | 4.47e-01 | 89.3% | 97.0% |
| 3694079 | 101.1.2.290 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF3759 | 0.60 | 52.0 | 4.48e-01 | 98.7% | 92.5% |
| 5073598 | 101.1.2.392 ↗ | alpha arrays › HTH › HTH › winged helix domain › SNRNP200_wHTH | 0.59 | 45.0 | 4.32e-01 | 85.3% | 68.9% |
| 3290536 | 604.39.1.0 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters | 0.59 | 50.0 | 3.78e-01 | 100.0% | 95.0% |
| 5073218 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 50.0 | 4.81e-01 | 100.0% | 84.4% |
| 4974816 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.58 | 44.0 | 3.93e-01 | 82.7% | 98.2% |
| 4880296 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.57 | 33.0 | 3.18e-01 | 80.0% | 49.4% |
| 5035666 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.57 | 45.0 | 4.62e-01 | 98.7% | 94.3% |
| 3619884 | 708.1.1.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain | 0.57 | 49.0 | 3.77e-01 | 98.7% | 82.2% |
| 3941149 | 197.1.1.0 ↗ | alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like | 0.56 | 44.0 | 3.63e-01 | 86.7% | 46.7% |
| 3695551 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.56 | 49.0 | 2.99e-01 | 100.0% | 43.8% |
| 3222399 | 2007.2.3.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc | 0.55 | 49.0 | 3.64e-01 | 98.7% | 75.3% |
| 4545670 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.55 | 48.0 | 4.46e-01 | 100.0% | 83.8% |
| 4102862 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.55 | 41.0 | 3.37e-01 | 80.0% | 47.9% |
| 3394510 | 1128.1.1.0 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein | 0.55 | 32.0 | 3.15e-01 | 76.0% | 53.8% |
| 4971641 | 1134.1.1.0 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain | 0.54 | 48.0 | 4.36e-01 | 98.7% | 83.0% |
| 4651951 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.53 | 40.0 | 2.76e-01 | 82.7% | 81.9% |
| 5052017 | 4002.1.1.5 ↗ | alpha bundles › alpha-helical domain in dehydroquinate synthase-like enzymes › alpha-helical domain in dehydroquinate synthase-like enzymes › alpha-helical domain in dehydroquinate synthase-like enzymes › ADH_Fe_C | 0.52 | 40.0 | 2.93e-01 | 84.0% | 65.2% |
| 3283570 | 106.1.1.11 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › RsbRD_N | 0.52 | 44.0 | 3.64e-01 | 98.7% | 56.6% |
| 3730471 | 4982.1.1.4 ↗ | alpha arrays › KaiA/RbsU domain-like › KaiA/RbsU domain › KaiA/RbsU domain › SYS1 | 0.51 | 44.0 | 3.73e-01 | 100.0% | 74.8% |
| 3288893 | 604.1.1.141 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF349 | 0.51 | 39.0 | 3.88e-01 | 89.3% | 78.8% |
| 4927302 | 1075.1.2.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain | 0.51 | 42.0 | 3.47e-01 | 93.3% | 71.4% |
| 3838101 | 2003.1.5.22 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase | 0.50 | 35.0 | 2.39e-01 | 72.0% | 28.6% |
| 5013271 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.50 | 44.0 | 2.73e-01 | 97.3% | 22.4% |