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JQ362498.1__AFF28027.1__PAU_29__00022
Bact-VirJQ362498.1__AFF28027.1__PAU_29__00022
Identity
- Accession:
- JQ362498 ↗
- Kingdom:
- phage
Quality
92.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-133
Domain cluster:
rep: NC_011103.1__YP_002117601.1__RM163_043__00043__D2-119
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1w36F02 | 1.10.10.160 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.54 | 31.0 | 3.44e-01 | 100.0% | 71.0% |
| 1kblA04 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.52 | 45.0 | 3.41e-01 | 100.0% | 98.8% |
| 3ijdA00 | 3.20.20.220 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › | 0.51 | 45.0 | 3.51e-01 | 98.4% | 94.8% |
| 7whfC02 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.51 | 29.0 | 3.21e-01 | 83.5% | 69.0% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3281506 | 4308.1.1.1 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR | 0.76 | 71.0 | 6.72e-01 | 100.0% | 98.7% |
| 4980726 | 2007.2.5.7 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase › DUF488-N3a | 0.65 | 54.0 | 5.68e-01 | 100.0% | 98.2% |
| 3487056 | 627.1.1.0 ↗ | alpha complex topology › VPS9 domain › VPS9 domain › VPS9 domain | 0.62 | 44.0 | 4.02e-01 | 92.1% | 55.8% |
| 3705990 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.59 | 32.0 | 4.10e-01 | 74.0% | 90.7% |
| 5011715 | 1075.1.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane | 0.52 | 43.0 | 3.60e-01 | 92.9% | 97.5% |
| 3788504 | 5061.1.1.2 ↗ | alpha complex topology › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › SecY,Plug_translocon | 0.51 | 38.0 | 2.66e-01 | 79.5% | 83.3% |
D2
medium
residues 140-180
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ecjA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.74 | 51.0 | 4.60e-01 | 73.2% | 53.4% |
| 6xi7B02 | 3.30.60.20 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.67 | 51.0 | 5.20e-01 | 100.0% | 92.3% |
| 3lrqB00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.67 | 47.0 | 3.80e-01 | 73.2% | 40.0% |
| 4n4fA02 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.65 | 45.0 | 4.57e-01 | 73.2% | 90.0% |
| 2darA01 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.63 | 52.0 | 4.50e-01 | 100.0% | 93.1% |
| 2miqA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.63 | 43.0 | 3.37e-01 | 73.2% | 35.1% |
| 1v6gA00 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.62 | 48.0 | 3.87e-01 | 85.4% | 49.4% |
| 3t4lA02 | 3.30.450.350 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › CHASE domain | 0.56 | 41.0 | 2.69e-01 | 85.4% | 23.5% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3541495 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.91 | 69.0 | 6.51e-01 | 100.0% | 68.8% |
| 3276133 | 377.9.1.2 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-HIT | 0.78 | 55.0 | 4.85e-01 | 75.6% | 51.7% |
| 3700937 | 377.9.1.2 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-HIT | 0.75 | 51.0 | 5.17e-01 | 73.2% | 72.5% |
| 5037811 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.70 | 48.0 | 5.11e-01 | 97.6% | 85.7% |
| 4932324 | 375.1.5.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein Ta0289-C | 0.68 | 46.0 | 5.05e-01 | 95.1% | 96.7% |
| 4929975 | 375.1.5.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein Ta0289-C | 0.66 | 44.0 | 4.87e-01 | 95.1% | 96.7% |
| 3906179 | 4099.1.1.9 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med27 | 0.64 | 52.0 | 3.62e-01 | 97.6% | 42.6% |
| 3210662 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.64 | 46.0 | 3.78e-01 | 78.0% | 76.2% |
| 4969294 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.62 | 50.0 | 4.65e-01 | 95.1% | 85.5% |
| 3720370 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.62 | 53.0 | 5.19e-01 | 100.0% | 95.6% |
| 3365516 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.57 | 45.0 | 3.78e-01 | 100.0% | 52.9% |
| 4336252 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.56 | 43.0 | 3.38e-01 | 95.1% | 60.0% |
| 4996763 | 2003.1.1.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase | 0.55 | 37.0 | 2.21e-01 | 95.1% | 8.1% |