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JQ362498.1__AFF28084.1__PAU_86__00079

Bact-Vir

JQ362498.1__AFF28084.1__PAU_86__00079

Identity

Accession:
JQ362498 ↗
Kingdom:
phage

Quality

78.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sphingomonas_phage_PAU

TaxID: 1150991

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-76
PDB
Domain cluster: rep: GWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00299__D7-79
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1eg3A03 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.56 44.0 4.03e-01 88.2% 98.9%
2liuA01 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.55 41.0 3.94e-01 89.7% 68.2%
2xuaA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 39.0 2.73e-01 86.8% 91.2%
1o82A00 1.20.225.10 Mainly Alpha › Up-down Bundle › Bacteriocin As-48; Chain A › Bacteriocin AS-48 0.51 41.0 4.07e-01 100.0% 91.4%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3677074 2004.1.1.56 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC 0.52 40.0 2.83e-01 86.8% 61.6%
D2 high residues 93-145
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bg3A04 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.80 54.0 5.68e-01 90.6% 78.7%
3tw6A06 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.73 49.0 4.94e-01 90.6% 68.5%
2ltuA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.71 61.0 5.85e-01 100.0% 87.1%
1zbsA03 1.10.720.160 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.69 58.0 4.94e-01 96.2% 68.5%
2l3nA00 1.10.1050.20 Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S4 Delta 41; Chain A, domain 1 › 0.69 47.0 3.78e-01 71.7% 71.2%
2rp4A00 6.10.280.60 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain 0.68 44.0 4.05e-01 77.4% 50.7%
2gv9A05 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.68 46.0 4.49e-01 75.5% 64.4%
2qkdA02 2.60.120.1040 Mainly Beta › Sandwich › Jelly Rolls › ZPR1, A/B domain 0.63 43.0 3.19e-01 75.5% 27.1%
3h5tA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.62 44.0 4.67e-01 77.4% 93.6%
7ce1A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.62 42.0 4.29e-01 71.7% 78.8%
4bfmA00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.60 47.0 3.00e-01 94.3% 16.6%
3l2pA01 1.10.3260.10 Mainly Alpha › Orthogonal Bundle › DNA ligase i, domain 1 › DNA ligase, ATP-dependent, N-terminal domain 0.59 41.0 2.83e-01 100.0% 19.7%
3op9A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.59 44.0 4.10e-01 81.1% 91.2%
1wzvA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.58 47.0 3.47e-01 92.5% 72.7%
3eg5B01 1.10.20.40 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Formin, diaphanous GTPase-binding domain 0.58 42.0 4.64e-01 84.9% 100.0%
3cnhB02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.57 45.0 4.19e-01 88.7% 100.0%
2plqA00 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.50 43.0 2.69e-01 100.0% 76.5%
3p0hB02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.50 42.0 2.68e-01 98.1% 64.3%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4946421 2004.1.1.120 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ResIII 0.85 70.0 3.85e-01 90.6% 7.3%
3659508 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.77 63.0 4.50e-01 90.6% 31.6%
5052392 102.1.3.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › PAP/OAS1 substrate-binding domain 0.70 58.0 4.64e-01 98.1% 63.5%
3711705 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.69 55.0 4.72e-01 92.5% 61.1%
3328080 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.67 58.0 4.76e-01 100.0% 99.0%
3702243 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.65 51.0 5.12e-01 90.6% 85.5%
3989606 632.19.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A 0.65 55.0 5.03e-01 96.2% 98.6%
4663921 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.63 51.0 3.28e-01 94.3% 50.0%
1149482 101.1.4.2 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › LacI 0.62 44.0 4.67e-01 77.4% 93.6%
3514126 2.1.1.42 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.59 47.0 3.61e-01 94.3% 45.0%
3792104 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.58 45.0 3.31e-01 88.7% 35.5%
146195 3764.1.1.0 ↗ alpha arrays › Repressor activator protein 1 (RAP1) helical bundle domain › Repressor activator protein 1 (RAP1) helical bundle domain › Repressor activator protein 1 (RAP1) helical bundle domain 0.53 38.0 3.85e-01 81.1% 80.8%