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JQ362498.1__AFF28100.1__PAU_102__00095
Bact-VirJQ362498.1__AFF28100.1__PAU_102__00095
Identity
- Accession:
- JQ362498 ↗
- Kingdom:
- phage
Quality
83.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 39-86
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6o38A04 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.68 | 57.0 | 4.79e-01 | 100.0% | 78.7% |
| 3lkbA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.66 | 58.0 | 3.99e-01 | 100.0% | 31.7% |
| 3hutA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.65 | 54.0 | 3.81e-01 | 93.8% | 32.0% |
| 3sg0A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.65 | 53.0 | 3.76e-01 | 93.8% | 34.9% |
| 4i6xA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.60 | 48.0 | 3.81e-01 | 97.9% | 80.3% |
| 1i3zA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.59 | 48.0 | 3.95e-01 | 100.0% | 49.5% |
| 2du7A02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.59 | 47.0 | 3.16e-01 | 100.0% | 78.1% |
| 3fysA02 | 3.30.1180.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › | 0.57 | 39.0 | 2.97e-01 | 72.9% | 38.0% |
| 2c9wA01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.55 | 43.0 | 3.52e-01 | 100.0% | 44.2% |
| 4bi3A01 | 3.90.1720.80 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › | 0.54 | 43.0 | 3.70e-01 | 97.9% | 53.8% |
| 2izvA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.53 | 42.0 | 3.08e-01 | 100.0% | 30.7% |
| 3klkA01 | 2.10.270.10 | Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding | 0.53 | 43.0 | 3.12e-01 | 100.0% | 90.1% |
| 3v76A02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.52 | 38.0 | 3.23e-01 | 83.3% | 58.9% |
| 6iaaA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 37.0 | 3.26e-01 | 81.2% | 72.8% |
| 3pggA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 37.0 | 3.34e-01 | 85.4% | 55.1% |
| 3o0wA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 41.0 | 2.76e-01 | 100.0% | 29.5% |
| 6r8gB02 | 3.90.110.10 | Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | 0.51 | 42.0 | 2.95e-01 | 97.9% | 84.1% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3907501 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.71 | 61.0 | 3.71e-01 | 100.0% | 34.0% |
| 3560459 | 391.1.2.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related | 0.63 | 50.0 | 5.17e-01 | 87.5% | 93.3% |
| 4202541 | 1.1.9.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF473 | 0.62 | 54.0 | 4.15e-01 | 100.0% | 81.7% |
| 5023086 | 1.1.9.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF473 | 0.62 | 55.0 | 4.05e-01 | 100.0% | 78.4% |
| 3753991 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.62 | 49.0 | 5.05e-01 | 87.5% | 93.3% |
| 4989078 | 1.1.9.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF473 | 0.62 | 53.0 | 3.96e-01 | 100.0% | 77.3% |
| 4939497 | 1.1.9.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF473 | 0.61 | 52.0 | 3.94e-01 | 100.0% | 79.2% |
| 3923583 | 2007.1.2.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor | 0.61 | 51.0 | 3.38e-01 | 100.0% | 32.4% |
| 5067314 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.60 | 52.0 | 3.44e-01 | 97.9% | 29.5% |
| 5069899 | 1.1.9.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF473 | 0.60 | 49.0 | 3.81e-01 | 97.9% | 80.0% |
| 3999188 | 389.1.2.0 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain | 0.59 | 45.0 | 4.47e-01 | 83.3% | 90.0% |
| 3880518 | 389.1.2.0 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain | 0.57 | 47.0 | 4.43e-01 | 93.8% | 81.7% |
| 3512824 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.57 | 45.0 | 3.72e-01 | 100.0% | 49.5% |
| 3926830 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.56 | 46.0 | 3.71e-01 | 100.0% | 51.8% |
| 4595620 | 2007.1.3.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Oxidored_q6 | 0.56 | 43.0 | 2.96e-01 | 85.4% | 56.8% |
| 4991684 | 2004.1.1.76 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 | 0.56 | 47.0 | 2.99e-01 | 100.0% | 90.2% |
| 3514549 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.56 | 46.0 | 3.71e-01 | 100.0% | 50.5% |
| 3504702 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.54 | 44.0 | 2.82e-01 | 89.6% | 86.2% |
D2
high
residues 98-196
Domain cluster:
rep: OV032902.1__CAH0447963.1__SM033_00139__00139__D168-264
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6o38A04 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.76 | 62.0 | 6.56e-01 | 97.0% | 97.8% |
| 6o38A03 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.74 | 57.0 | 6.19e-01 | 90.9% | 98.8% |
| 6o38A02 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.73 | 63.0 | 6.52e-01 | 96.0% | 100.0% |
| 6o38A01 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.73 | 62.0 | 6.45e-01 | 94.9% | 100.0% |
| 4dnyA00 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.69 | 62.0 | 6.06e-01 | 98.0% | 88.1% |
| 4knuA02 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.61 | 45.0 | 3.80e-01 | 75.8% | 71.7% |
| 1kbvA02 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.61 | 44.0 | 3.80e-01 | 75.8% | 75.3% |
| 1id2A00 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.59 | 41.0 | 4.04e-01 | 76.8% | 66.0% |
| 3t9wA01 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.57 | 44.0 | 3.97e-01 | 82.8% | 79.9% |
| 5fc9A00 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.56 | 40.0 | 4.14e-01 | 75.8% | 82.1% |
| 3kw8A02 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.55 | 38.0 | 3.47e-01 | 70.7% | 90.2% |
| 3zx1A01 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.55 | 46.0 | 3.93e-01 | 90.9% | 71.2% |
| 1hf2A02 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.55 | 47.0 | 4.65e-01 | 97.0% | 92.5% |
| 1byoA00 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.54 | 42.0 | 4.24e-01 | 83.8% | 85.9% |
| 6xizA02 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.54 | 45.0 | 3.88e-01 | 91.9% | 71.4% |
| 3ib5A00 | 3.10.570.10 | Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain | 0.54 | 42.0 | 2.92e-01 | 84.8% | 29.2% |
| 1ibyA00 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.53 | 41.0 | 3.97e-01 | 83.8% | 86.6% |
| 2ox5B00 | 2.60.40.2470 | Mainly Beta › Sandwich › Immunoglobulin-like › SoxY domain | 0.51 | 33.0 | 3.21e-01 | 87.9% | 58.2% |
| 3pnrB00 | 2.60.40.2020 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 39.0 | 3.63e-01 | 83.8% | 86.8% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2581340 | 520.2.1.1 ↗ | beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich | 0.76 | 61.0 | 6.52e-01 | 94.9% | 97.7% |
| 2581339 | 520.2.1.1 ↗ | beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich | 0.75 | 64.0 | 6.61e-01 | 97.0% | 97.9% |
| 2581337 | 520.2.1.1 ↗ | beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich | 0.73 | 62.0 | 6.43e-01 | 94.9% | 97.8% |
| 2581338 | 520.2.1.1 ↗ | beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich | 0.72 | 64.0 | 6.52e-01 | 97.0% | 100.0% |
| 185692 | 520.2.1.1 ↗ | beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich | 0.69 | 62.0 | 6.06e-01 | 98.0% | 88.1% |
| 4561709 | 520.2.1.1 ↗ | beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich | 0.67 | 55.0 | 5.75e-01 | 94.9% | 98.9% |
| 4169637 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.63 | 55.0 | 4.13e-01 | 98.0% | 64.3% |
| 3390048 | 3156.1.1.4 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cu-oxidase | 0.59 | 47.0 | 3.78e-01 | 84.8% | 91.1% |
| 4926867 | 3156.1.1.3 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Copper-bind | 0.58 | 42.0 | 3.91e-01 | 76.8% | 63.6% |
| 4927573 | 3156.1.1.13 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cupredoxin_1 | 0.58 | 41.0 | 4.08e-01 | 74.7% | 75.2% |
| 3684241 | 3156.1.1.4 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cu-oxidase | 0.57 | 45.0 | 3.49e-01 | 84.8% | 89.1% |
| 3836258 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.52 | 41.0 | 4.03e-01 | 82.8% | 97.1% |
| 3651307 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.52 | 40.0 | 3.78e-01 | 79.8% | 93.0% |
| 3646748 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.52 | 39.0 | 3.68e-01 | 79.8% | 89.2% |
| 3485798 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 42.0 | 3.71e-01 | 90.9% | 89.3% |
| 3329328 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.51 | 39.0 | 3.66e-01 | 79.8% | 86.6% |