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JQ362498.1__AFF28126.1__PAU_128__00121

Bact-Vir

JQ362498.1__AFF28126.1__PAU_128__00121

Identity

Accession:
JQ362498 ↗
Kingdom:
phage

Quality

69.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sphingomonas_phage_PAU

TaxID: 1150991

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 23-105
PDB
Domain cluster: rep: KF147891.1__AGS81953.1__PaBG_00069__00069__D24-99
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4b8vA01 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.76 50.0 5.50e-01 73.5% 83.6%
4r9pA00 2.60.200.10 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.53 38.0 2.92e-01 83.1% 31.0%
3w3sA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.51 38.0 2.64e-01 83.1% 61.7%
1i8dC02 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.51 35.0 3.49e-01 71.1% 86.4%
2jmlA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.50 35.0 3.53e-01 72.3% 86.4%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2047861 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.80 54.0 6.37e-01 75.9% 98.3%
4995817 101.15.1.4 ↗ alpha arrays › HTH › LysM domain › LysM domain › Phage_gp53 0.78 61.0 6.52e-01 83.1% 97.1%
2124917 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.78 55.0 4.28e-01 72.3% 37.3%
2124476 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.76 50.0 4.20e-01 73.5% 41.5%
3381619 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.75 54.0 3.65e-01 77.1% 21.2%
3679146 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.75 54.0 4.66e-01 83.1% 49.6%
3359799 101.15.1.10 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM2_NFP 0.74 55.0 4.65e-01 78.3% 48.9%
3320955 101.15.1.5 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 0.73 52.0 5.78e-01 77.1% 93.8%
3422876 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.73 51.0 5.83e-01 79.5% 100.0%
2124918 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.73 55.0 4.62e-01 79.5% 94.1%
2543722 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.73 54.0 5.56e-01 78.3% 82.3%
3367888 101.15.1.5 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 0.72 51.0 5.49e-01 73.5% 94.3%
3666767 101.15.1.10 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM2_NFP 0.71 49.0 4.51e-01 72.3% 56.2%
3375189 101.15.1.10 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM2_NFP 0.71 53.0 5.64e-01 86.7% 92.9%
3448128 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.71 50.0 4.24e-01 73.5% 48.1%
3355076 101.15.1.6 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM2_CERK1_LYK3_4_5 0.71 49.0 5.62e-01 73.5% 100.0%
3810505 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.71 52.0 4.11e-01 77.1% 40.0%
4023407 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.69 48.0 4.97e-01 74.7% 75.0%
3651054 101.15.1.10 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM2_NFP 0.69 51.0 4.10e-01 80.7% 41.3%
4180000 304.9.1.38 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › SET_assoc 0.55 35.0 3.42e-01 78.3% 57.8%
4947975 304.111.1.1 ↗ a+b two layers › Alpha-beta plaits › PurM C-terminal domain-like › PurM C-terminal domain-like › AIRS_C 0.54 40.0 3.07e-01 77.1% 37.8%
3291393 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.52 36.0 3.28e-01 72.3% 58.3%
5074951 304.111.1.1 ↗ a+b two layers › Alpha-beta plaits › PurM C-terminal domain-like › PurM C-terminal domain-like › AIRS_C 0.52 37.0 2.98e-01 75.9% 40.6%
4948774 304.111.1.1 ↗ a+b two layers › Alpha-beta plaits › PurM C-terminal domain-like › PurM C-terminal domain-like › AIRS_C 0.51 37.0 2.49e-01 77.1% 21.2%
3956622 304.48.1.4 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Guanylate_cyc 0.50 31.0 2.69e-01 100.0% 40.0%