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JQ362498.1__AFF28249.1__PAU_251__00244

Bact-Vir

JQ362498.1__AFF28249.1__PAU_251__00244

Identity

Accession:
JQ362498 ↗
Kingdom:
phage

Quality

92.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sphingomonas_phage_PAU

TaxID: 1150991

Cluster

View cluster (42 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 48-114
PDB
Domain cluster: rep: MK448710.1__QBX16110.1__Javan233_0030__00030__D34-99
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2p84A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.87 79.0 7.66e-01 97.0% 91.8%
2i2lB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 58.0 5.78e-01 91.0% 95.6%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.65 47.0 4.59e-01 77.6% 85.3%
1qmyA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.65 46.0 3.56e-01 80.6% 32.7%
3be3A00 2.30.30.320 Mainly Beta › Roll › SH3 type barrels. › DUF1653-like domain 0.64 56.0 5.42e-01 97.0% 98.7%
3qijB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 44.0 4.01e-01 71.6% 78.7%
4o5vA03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.64 49.0 4.74e-01 83.6% 92.1%
2evrA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 50.0 4.86e-01 86.6% 95.9%
4ggtB00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.63 49.0 4.23e-01 85.1% 100.0%
5cvmA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.63 47.0 3.13e-01 83.6% 49.7%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 44.0 3.79e-01 74.6% 69.7%
2jiiA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.62 47.0 3.97e-01 80.6% 86.4%
1nqnA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.62 46.0 3.84e-01 80.6% 99.2%
3gqbA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.62 46.0 4.53e-01 92.5% 74.6%
5yprA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 47.0 4.42e-01 83.6% 95.2%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 42.0 3.90e-01 73.1% 83.9%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.60 52.0 5.03e-01 97.0% 87.0%
3gd0A02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.60 47.0 4.03e-01 86.6% 79.5%
3zx7A02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.60 44.0 3.58e-01 80.6% 98.5%
4hwmA00 2.40.128.500 Mainly Beta › Beta Barrel › Lipocalin › YedD-like protein 0.60 51.0 4.33e-01 98.5% 90.6%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.59 43.0 3.53e-01 89.6% 39.4%
2wssA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.59 46.0 4.12e-01 83.6% 75.3%
1yzbA01 3.90.70.40 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.59 45.0 3.79e-01 86.6% 55.6%
6oqrA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.59 46.0 4.16e-01 83.6% 78.9%
3zypA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 44.0 3.16e-01 83.6% 58.5%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 42.0 4.22e-01 76.1% 89.7%
3gceA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.58 40.0 3.53e-01 73.1% 84.6%
4d6wA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.58 40.0 3.58e-01 71.6% 78.9%
3ge2A00 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.58 43.0 4.01e-01 82.1% 98.9%
2dg1C00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.57 44.0 2.87e-01 83.6% 82.2%
1fhoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 46.0 3.88e-01 92.5% 70.6%
2p4oA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 43.0 2.86e-01 89.6% 97.6%
2dk7A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.53 36.0 3.51e-01 70.1% 64.4%
3f0zA01 3.30.310.260 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.53 38.0 3.35e-01 79.1% 83.0%
3e5zA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.52 43.0 2.88e-01 95.5% 83.8%
3fqmA01 2.20.25.210 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Hepatitis C NS5A, domain 1B 0.52 37.0 3.87e-01 88.1% 83.6%
4cckA03 3.90.930.40 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.52 38.0 3.07e-01 82.1% 71.2%
1orvA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.51 39.0 2.39e-01 83.6% 93.2%
3bwsA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 38.0 2.56e-01 85.1% 94.1%
3asiA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 41.0 3.15e-01 94.0% 75.8%
ECOD (69)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
676 4999.1.1.1 ↗ beta barrels › YopX, C-terminal domain-like › YopX, C-terminal domain-like › YopX, C-terminal domain-like › YopX 0.88 67.0 7.12e-01 80.6% 90.0%
3590122 4999.1.1.1 ↗ beta barrels › YopX, C-terminal domain-like › YopX, C-terminal domain-like › YopX, C-terminal domain-like › YopX 0.86 68.0 6.96e-01 83.6% 96.9%
5013892 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 60.0 6.62e-01 83.6% 100.0%
4966534 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 54.0 6.06e-01 83.6% 100.0%
4990212 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 56.0 6.10e-01 79.1% 100.0%
5023740 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 53.0 5.94e-01 82.1% 100.0%
4938404 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 55.0 6.00e-01 89.6% 96.4%
5017214 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 57.0 6.21e-01 86.6% 100.0%
5002449 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 56.0 6.06e-01 89.6% 98.2%
5056706 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 52.0 5.86e-01 82.1% 100.0%
4982334 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 56.0 6.14e-01 89.6% 100.0%
5058671 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 55.0 5.97e-01 85.1% 96.4%
3910607 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.72 50.0 5.09e-01 71.6% 100.0%
5044373 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 60.0 6.27e-01 89.6% 100.0%
4952887 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 55.0 5.96e-01 88.1% 100.0%
5033075 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 53.0 5.78e-01 85.1% 96.4%
4930179 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 55.0 5.92e-01 86.6% 100.0%
4957409 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 51.0 5.72e-01 85.1% 100.0%
4478971 4.1.1.174 ↗ beta barrels › SH3 › SH3 › SH3 › DUF951 0.71 57.0 5.79e-01 86.6% 100.0%
3978624 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.71 56.0 4.57e-01 88.1% 50.0%
3464671 4.1.1.136 ↗ beta barrels › SH3 › SH3 › SH3 › NMD_SH3 0.69 58.0 5.75e-01 91.0% 97.1%
4012945 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 52.0 5.04e-01 80.6% 100.0%
3468148 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.69 52.0 3.80e-01 83.6% 41.5%
5040416 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 48.0 5.34e-01 80.6% 100.0%
4680376 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.68 52.0 5.63e-01 89.6% 100.0%
3952707 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 52.0 4.20e-01 83.6% 76.2%
4665407 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.68 48.0 5.42e-01 83.6% 100.0%
3483289 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 54.0 5.54e-01 88.1% 100.0%
4128405 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.67 50.0 4.99e-01 92.5% 75.7%
3936469 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 54.0 4.96e-01 97.0% 67.8%
3593768 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 50.0 4.44e-01 80.6% 96.8%
3533183 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.66 46.0 4.03e-01 73.1% 71.0%
4854958 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.65 51.0 4.47e-01 95.5% 57.3%
3480535 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 45.0 3.93e-01 73.1% 69.5%
2028019 4.1.1.136 ↗ beta barrels › SH3 › SH3 › SH3 › NMD_SH3 0.65 52.0 5.32e-01 88.1% 100.0%
3903397 102.1.1.124 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › CABIT 0.65 49.0 4.61e-01 80.6% 92.5%
5036616 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.65 53.0 5.27e-01 91.0% 87.1%
4026678 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.65 52.0 5.20e-01 92.5% 85.7%
4627221 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.65 50.0 5.11e-01 86.6% 86.2%
4273414 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.64 47.0 4.69e-01 86.6% 72.9%
3973553 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 47.0 4.71e-01 86.6% 74.3%
4184958 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 46.0 4.21e-01 85.1% 58.8%
4047241 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.63 46.0 4.09e-01 86.6% 53.7%
3404845 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.63 44.0 3.98e-01 73.1% 76.8%
3913687 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.63 53.0 4.81e-01 92.5% 72.2%
3620992 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.63 37.0 4.20e-01 71.6% 78.0%
4111597 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.63 45.0 4.60e-01 85.1% 76.9%
5078626 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.61 50.0 4.90e-01 91.0% 97.3%
3290662 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.61 50.0 4.11e-01 94.0% 51.5%
3463325 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.60 46.0 3.21e-01 86.6% 33.7%
3710203 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.60 45.0 2.80e-01 83.6% 47.3%
4163711 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.60 45.0 4.12e-01 79.1% 80.0%
3610290 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.59 45.0 2.84e-01 85.1% 23.5%
3717786 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.58 45.0 2.75e-01 88.1% 28.6%
3292420 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.58 52.0 4.68e-01 98.5% 77.8%
3704121 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.57 36.0 3.80e-01 73.1% 72.4%
3980228 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.57 46.0 3.84e-01 91.0% 50.4%
4012524 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.57 39.0 2.50e-01 71.6% 28.4%
5061079 4294.1.1.13 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Zn_ribbon_TFIIB 0.56 34.0 3.93e-01 71.6% 88.9%
4431947 5.1.3.23 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SGL 0.56 41.0 2.71e-01 80.6% 88.1%
2097 6.1.1.12 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Agglutinin 0.55 40.0 3.21e-01 80.6% 97.9%
3724346 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.54 38.0 2.65e-01 77.6% 97.8%
4078246 9.4.1.1 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains › DAP_B 0.54 44.0 4.29e-01 94.0% 100.0%
4572703 101.1.9.6 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › KilA-N 0.53 42.0 3.46e-01 92.5% 93.3%
3211176 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.52 36.0 2.55e-01 74.6% 26.3%
3943609 5.1.3.23 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SGL 0.52 39.0 2.66e-01 85.1% 80.3%
3247669 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.51 36.0 2.57e-01 77.6% 25.9%
4539117 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.51 39.0 3.12e-01 85.1% 59.3%
4100425 11.1.4.90 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF4550 0.51 43.0 3.55e-01 98.5% 71.5%