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JQ619704.1__AFE86265.1__PBC1_029__00029

Bact-Vir

JQ619704.1__AFE86265.1__PBC1_029__00029

Identity

Accession:
JQ619704 ↗
Kingdom:
phage

Quality

73.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pebcunavirus› Bacillus_phage_PBC1

TaxID: 1161901

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-56
PDB
Domain cluster: rep: NC_023599.1__YP_009009192.1__CH06_gp48__00048__D22-69
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4njcA00 3.10.20.730 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNAP, epsilon subunit-like 0.61 45.0 4.41e-01 78.6% 86.7%
1y7xA01 2.30.30.550 Mainly Beta › Roll › SH3 type barrels. › Major Vault Protein repeat 0.60 43.0 4.55e-01 78.6% 100.0%
1kf6B01 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.58 39.0 3.23e-01 71.4% 82.7%
1d6uA03 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.56 38.0 2.36e-01 75.0% 33.2%
2v9kA04 3.30.70.3190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 38.0 3.19e-01 76.8% 100.0%
1kbaA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.53 41.0 3.97e-01 98.2% 74.2%
6x3aA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 36.0 3.05e-01 73.2% 89.4%
3j7aV00 2.40.50.1000 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 40.0 3.04e-01 85.7% 44.5%
2byfA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 36.0 3.08e-01 78.6% 47.7%
2d7eA01 3.40.1440.60 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › PriA, 3(prime) DNA-binding domain 0.51 41.0 3.56e-01 91.1% 64.4%
2n99A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.51 42.0 3.93e-01 100.0% 89.5%
2v5yA05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 36.0 3.12e-01 78.6% 53.6%
3ttqA03 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.50 35.0 2.39e-01 76.8% 85.9%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3846895 3380.1.1.2 ↗ a+b duplicates or obligate multimers › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 › Fra10Ac1 0.71 56.0 4.92e-01 83.9% 61.3%
3355968 375.1.1.190 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Fra10Ac1 0.69 53.0 4.21e-01 83.9% 42.6%
3573641 384.1.1.8 ↗ few secondary structure elements › BPTI-like › BPTI-like › BPTI-like › BPTI_nem 0.63 47.0 4.30e-01 83.9% 87.0%
1145963 4012.3.1.1 ↗ a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 › Cas9_PI 0.57 46.0 3.91e-01 94.6% 95.0%
3571257 5089.1.1.3 ↗ beta complex topology › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Gasdermin 0.57 48.0 3.22e-01 100.0% 55.9%
3957852 245.1.1.0 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.56 39.0 3.19e-01 76.8% 36.5%
3873212 382.1.1.1 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 0.56 47.0 4.11e-01 98.2% 93.3%
3702051 1116.1.1.0 ↗ a+b two layers › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin-mucolipin domain 0.55 40.0 2.82e-01 80.4% 42.0%
3614316 1116.1.1.0 ↗ a+b two layers › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin-mucolipin domain 0.55 40.0 2.87e-01 80.4% 30.8%
3710214 1116.1.1.0 ↗ a+b two layers › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin-mucolipin domain 0.55 40.0 2.69e-01 80.4% 43.5%
3591997 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 39.0 3.02e-01 80.4% 65.4%
3413442 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.53 43.0 3.92e-01 100.0% 88.2%
4563833 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 41.0 2.53e-01 85.7% 45.2%
3742116 10.32.1.72 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › TPPII_GBD 0.53 38.0 3.09e-01 78.6% 74.8%
4015210 245.1.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.52 36.0 3.19e-01 78.6% 47.8%
3508351 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.52 37.0 2.78e-01 78.6% 64.0%
2095485 1.1.5.38 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_C107 0.51 42.0 2.94e-01 96.4% 72.6%
4598948 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.51 44.0 4.22e-01 98.2% 96.9%
4534824 382.1.1.7 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Toxin_cobra-type 0.51 44.0 3.84e-01 98.2% 74.1%
3686913 101.1.2.115 ↗ alpha arrays › HTH › HTH › winged helix domain › CDC27 0.51 44.0 3.27e-01 100.0% 57.3%
2466354 3435.1.1.7 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › PF30932 0.50 36.0 2.42e-01 78.6% 29.1%