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JQ660954.1__AFJ96063.1__X__00004
Bact-VirJQ660954.1__AFJ96063.1__X__00004
Identity
- Accession:
- JQ660954 ↗
- Kingdom:
- phage
Quality
78.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 17-94_302-335
Domain cluster:
rep: JQ312117.1__AFH19810.1__7-7-1_000113__00112__D28-125_313-371
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04860.18 best | Phage_portal | 47.6 | 1.90e-12 | 54.5% | 18.1% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4jf6A00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.52 | 38.0 | 3.04e-01 | 76.8% | 64.9% |
| 2frgP00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 33.0 | 3.43e-01 | 72.3% | 67.9% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4031453 | 4038.1.1.1 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal | 0.91 | 72.0 | 5.27e-01 | 81.2% | 84.7% |
| 3943006 | 4038.1.1.1 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal | 0.89 | 75.0 | 5.36e-01 | 87.5% | 83.1% |
| 4032886 | 4038.1.1.1 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal | 0.83 | 69.0 | 5.02e-01 | 85.7% | 84.2% |
| 4410228 | 4038.1.1.1 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal | 0.81 | 71.0 | 5.12e-01 | 91.1% | 85.8% |
| 3964357 | 4038.1.1.1 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal | 0.80 | 66.0 | 4.77e-01 | 86.6% | 82.8% |
| 3590909 | 4038.1.1.1 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal | 0.78 | 65.0 | 4.79e-01 | 87.5% | 85.2% |
| 3589399 | 4038.1.1.1 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal | 0.76 | 61.0 | 4.43e-01 | 83.9% | 85.4% |
| 5082483 | 4038.1.1.1 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal | 0.67 | 56.0 | 4.55e-01 | 87.5% | 98.5% |
| 4970236 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.53 | 40.0 | 3.62e-01 | 80.4% | 82.5% |
| 3764131 | 11.1.1.99 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set | 0.53 | 33.0 | 3.29e-01 | 72.3% | 59.1% |
| 3494105 | 221.1.1.64 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Formin_GBD_N | 0.53 | 27.0 | 3.16e-01 | 72.3% | 67.5% |
| 4633012 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 32.0 | 2.62e-01 | 72.3% | 31.4% |
| 3696190 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.50 | 32.0 | 3.18e-01 | 76.8% | 60.0% |
D2
medium
residues 95-175
Domain cluster:
rep: MK460246.1__QAX95578.1__SEA_NIBB_39__00038__D58-120
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ex4B02 | 2.30.30.10 | Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral | 0.81 | 50.0 | 5.75e-01 | 76.5% | 84.7% |
| 3askA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.76 | 50.0 | 5.66e-01 | 72.8% | 88.7% |
| 5ygbA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.74 | 50.0 | 5.05e-01 | 72.8% | 70.0% |
| 6my0A02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 51.0 | 5.58e-01 | 79.0% | 92.3% |
| 2gfaB01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 45.0 | 5.09e-01 | 75.3% | 87.1% |
| 4iupA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 49.0 | 5.23e-01 | 75.3% | 84.7% |
| 4iimA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.66 | 45.0 | 5.28e-01 | 75.3% | 100.0% |
| 2eczA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.65 | 47.0 | 5.09e-01 | 82.7% | 88.6% |
| 2l89A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 48.0 | 4.40e-01 | 79.0% | 59.3% |
| 3kxtA00 | 2.30.30.610 | Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 | 0.64 | 43.0 | 4.96e-01 | 84.0% | 100.0% |
| 1udlA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.64 | 45.0 | 4.25e-01 | 76.5% | 61.2% |
| 3mcrA00 | 3.30.460.80 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit | 0.63 | 47.0 | 3.80e-01 | 77.8% | 74.0% |
| 6uy8A01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.62 | 43.0 | 4.87e-01 | 76.5% | 98.3% |
| 2epdA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.62 | 46.0 | 4.75e-01 | 82.7% | 84.2% |
| 4ld6A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 54.0 | 4.70e-01 | 93.8% | 76.9% |
| 3fppA01 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.61 | 45.0 | 4.15e-01 | 77.8% | 62.5% |
| 4cc2A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.61 | 45.0 | 5.00e-01 | 77.8% | 98.4% |
| 2dmoA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.59 | 44.0 | 4.74e-01 | 82.7% | 94.1% |
| 2cqaA01 | 2.40.50.360 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain | 0.58 | 42.0 | 4.35e-01 | 75.3% | 97.3% |
| 1q67A01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.57 | 43.0 | 3.65e-01 | 82.7% | 80.7% |
| 1iz6A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 44.0 | 4.71e-01 | 82.7% | 98.6% |
| 1m4zA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.56 | 46.0 | 3.50e-01 | 91.4% | 75.5% |
| 1lc0A02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.55 | 42.0 | 3.43e-01 | 81.5% | 68.7% |
| 1ohfA03 | 2.60.270.70 | Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › | 0.54 | 41.0 | 3.46e-01 | 82.7% | 92.9% |
| 2xzhA00 | 2.130.10.110 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain | 0.53 | 38.0 | 2.57e-01 | 77.8% | 27.9% |
| 1mi8A00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.53 | 38.0 | 3.26e-01 | 77.8% | 88.7% |
| 4b63A00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.52 | 46.0 | 2.90e-01 | 100.0% | 88.5% |
| 2ed8A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 33.0 | 3.29e-01 | 85.2% | 61.6% |
| 3ci0J01 | 3.10.610.10 | Alpha Beta › Roll › Pili subunits › GSPII I/J protein-like | 0.51 | 35.0 | 3.24e-01 | 70.4% | 56.7% |
| 2crfA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 44.0 | 3.91e-01 | 100.0% | 91.2% |
| 2yrvA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 43.0 | 3.87e-01 | 92.6% | 77.0% |
| 4kbxA01 | 2.40.37.30 | Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › | 0.50 | 42.0 | 3.06e-01 | 92.6% | 87.8% |
| 1wqsA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.50 | 38.0 | 3.59e-01 | 85.2% | 87.4% |
| 3ossC00 | 2.30.30.830 | Mainly Beta › Roll › SH3 type barrels. › | 0.50 | 37.0 | 4.09e-01 | 97.5% | 98.5% |
ECOD (59)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2157301 | 4.1.1.78 ↗ | beta barrels › SH3 › SH3 › SH3 › TTD | 0.76 | 53.0 | 5.58e-01 | 72.8% | 83.6% |
| 3750522 | 4.1.1.218 ↗ | beta barrels › SH3 › SH3 › SH3 › PWP3A-B_N | 0.75 | 52.0 | 4.66e-01 | 74.1% | 52.7% |
| 4941620 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.75 | 49.0 | 5.64e-01 | 79.0% | 91.7% |
| 3886492 | 4.1.1.154 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF4772 | 0.74 | 54.0 | 5.58e-01 | 75.3% | 82.7% |
| 4484893 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 48.0 | 5.29e-01 | 76.5% | 83.1% |
| 3942998 | 4056.1.1.0 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein | 0.73 | 60.0 | 6.37e-01 | 86.4% | 100.0% |
| 5042614 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 47.0 | 4.98e-01 | 75.3% | 75.7% |
| 3482706 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 55.0 | 4.29e-01 | 80.2% | 54.1% |
| 3645842 | 4.1.1.162 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF502 | 0.72 | 52.0 | 5.30e-01 | 76.5% | 80.0% |
| 3447797 | 4.25.1.0 ↗ | beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain | 0.72 | 52.0 | 4.17e-01 | 75.3% | 78.0% |
| 3484700 | 4.8.1.10 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like | 0.70 | 50.0 | 4.66e-01 | 74.1% | 60.0% |
| 3464303 | 4.25.1.0 ↗ | beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain | 0.70 | 53.0 | 4.21e-01 | 79.0% | 85.8% |
| 3676628 | 4.1.1.162 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF502 | 0.69 | 51.0 | 4.45e-01 | 77.8% | 56.7% |
| 3631313 | 4.1.1.225 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7025 | 0.69 | 52.0 | 3.88e-01 | 79.0% | 40.5% |
| 3934278 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 54.0 | 4.73e-01 | 82.7% | 74.8% |
| 3188394 | 4.8.1.22 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 | 0.67 | 50.0 | 4.37e-01 | 79.0% | 69.2% |
| 4013811 | 4.8.1.22 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 | 0.67 | 50.0 | 4.87e-01 | 79.0% | 84.4% |
| 4335022 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 48.0 | 4.61e-01 | 76.5% | 74.7% |
| 4470603 | 4.1.1.217 ↗ | beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 | 0.66 | 47.0 | 3.72e-01 | 74.1% | 52.1% |
| 3997130 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 49.0 | 4.58e-01 | 77.8% | 85.0% |
| 3279083 | 4.6.1.7 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PF26205 | 0.66 | 47.0 | 4.93e-01 | 74.1% | 88.0% |
| 3572436 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.66 | 48.0 | 4.33e-01 | 76.5% | 64.5% |
| 3664043 | 5.1.2.21 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › DUF295 | 0.66 | 47.0 | 3.16e-01 | 74.1% | 28.8% |
| 3937478 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.65 | 50.0 | 4.55e-01 | 82.7% | 87.3% |
| 3253266 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 52.0 | 4.74e-01 | 85.2% | 87.6% |
| 3765007 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.65 | 51.0 | 5.44e-01 | 93.8% | 97.1% |
| 145843 | 4.1.1.12 ↗ | beta barrels › SH3 › SH3 › SH3 › PWWP | 0.65 | 48.0 | 4.40e-01 | 79.0% | 59.3% |
| 3869065 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.64 | 47.0 | 4.37e-01 | 76.5% | 71.0% |
| 3967986 | 4.7.1.2 ↗ | beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › ROF | 0.64 | 48.0 | 4.89e-01 | 80.2% | 85.0% |
| 3561013 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.64 | 46.0 | 4.83e-01 | 90.1% | 82.7% |
| 5048974 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 48.0 | 4.34e-01 | 81.5% | 65.5% |
| 3657113 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.62 | 43.0 | 3.75e-01 | 70.4% | 65.8% |
| 3962565 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.61 | 45.0 | 4.24e-01 | 79.0% | 65.0% |
| 4607576 | 4.1.1.370 ↗ | beta barrels › SH3 › SH3 › SH3 › PF28261 | 0.61 | 41.0 | 4.40e-01 | 79.0% | 81.4% |
| 4997059 | 4.1.1.139 ↗ | beta barrels › SH3 › SH3 › SH3 › IF5A-like_N | 0.60 | 47.0 | 4.87e-01 | 82.7% | 94.7% |
| 3557649 | 4.8.1.20 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › PWP3A-B_N | 0.60 | 50.0 | 4.56e-01 | 90.1% | 98.1% |
| 5022323 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 40.0 | 4.38e-01 | 70.4% | 100.0% |
| 3572423 | 4.1.1.12 ↗ | beta barrels › SH3 › SH3 › SH3 › PWWP | 0.59 | 52.0 | 4.50e-01 | 93.8% | 75.0% |
| 4017099 | 4.1.1.225 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7025 | 0.59 | 50.0 | 3.61e-01 | 92.6% | 80.0% |
| 3253267 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 46.0 | 4.54e-01 | 85.2% | 96.5% |
| 4946993 | 4.1.1.479 ↗ | beta barrels › SH3 › SH3 › SH3 › eIF-5a | 0.58 | 44.0 | 4.73e-01 | 81.5% | 95.7% |
| 4025827 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.58 | 44.0 | 3.25e-01 | 80.2% | 64.0% |
| 4931072 | 4.1.1.139 ↗ | beta barrels › SH3 › SH3 › SH3 › IF5A-like_N | 0.57 | 44.0 | 4.67e-01 | 82.7% | 95.7% |
| 3643549 | 4.1.1.139 ↗ | beta barrels › SH3 › SH3 › SH3 › IF5A-like_N | 0.57 | 44.0 | 4.46e-01 | 82.7% | 83.7% |
| 4985567 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.56 | 43.0 | 4.11e-01 | 81.5% | 92.6% |
| 5043827 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.56 | 41.0 | 3.45e-01 | 76.5% | 73.6% |
| 3881192 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 47.0 | 3.70e-01 | 92.6% | 46.5% |
| 3483489 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 43.0 | 4.50e-01 | 82.7% | 89.3% |
| 3593482 | 2.1.1.135 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF3592 | 0.54 | 39.0 | 3.68e-01 | 76.5% | 77.0% |
| 3709162 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.54 | 39.0 | 2.65e-01 | 77.8% | 30.9% |
| 1874264 | 6176.1.1.1 ↗ | beta sandwiches › Insertion domain in tetravirus coat protein › Insertion domain in tetravirus coat protein › Insertion domain in tetravirus coat protein › Peptidase_A21 | 0.53 | 41.0 | 3.48e-01 | 84.0% | 93.6% |
| 3286196 | 206.1.1.11 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH | 0.53 | 38.0 | 2.55e-01 | 76.5% | 50.6% |
| 3912956 | 4.1.1.56 ↗ | beta barrels › SH3 › SH3 › SH3 › RBB1NT | 0.53 | 45.0 | 3.96e-01 | 92.6% | 90.8% |
| 3963504 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 41.0 | 3.59e-01 | 87.7% | 74.6% |
| 3189396 | 2.1.1.29 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep-A_N | 0.53 | 48.0 | 4.06e-01 | 100.0% | 84.6% |
| 4314504 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.52 | 41.0 | 3.48e-01 | 86.4% | 90.4% |
| 3598220 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.51 | 44.0 | 3.75e-01 | 98.8% | 82.1% |
| 4141852 | 1.1.13.56 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › YQBQ | 0.51 | 37.0 | 3.73e-01 | 82.7% | 76.5% |
| 5025053 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.50 | 44.0 | 3.74e-01 | 98.8% | 85.2% |
D3
medium
residues 176-279
Domain cluster:
rep: OK349510.1__UJJ74872.1__X__00221__D5-114
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04860.18 best | Phage_portal | 64.8 | 1.10e-17 | 100.0% | 31.1% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1krlB00 | 6.10.140.2000 | Special › Helix non-globular › Helix Hairpins › | 0.71 | 21.0 | 3.15e-01 | 71.2% | 58.3% |
| 3kdrA03 | 3.30.1120.70 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.62 | 22.0 | 3.15e-01 | 83.7% | 66.0% |
| 4hlbA00 | 3.30.70.2960 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 32.0 | 3.39e-01 | 100.0% | 70.5% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4031453 | 4038.1.1.1 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal | 0.66 | 57.0 | 4.34e-01 | 100.0% | 39.2% |
| 5039294 | 4038.1.1.1 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal | 0.66 | 59.0 | 4.31e-01 | 100.0% | 36.8% |
| 3980782 | 4038.1.1.7 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal_2 | 0.60 | 52.0 | 3.70e-01 | 100.0% | 30.4% |
| 5004294 | 4038.1.1.0 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein | 0.58 | 53.0 | 3.88e-01 | 100.0% | 41.1% |
| 4410228 | 4038.1.1.1 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal | 0.58 | 51.0 | 3.81e-01 | 100.0% | 48.0% |
| 3713128 | 304.120.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI | 0.54 | 28.0 | 3.33e-01 | 100.0% | 72.9% |
| 2594989 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.54 | 30.0 | 3.33e-01 | 96.2% | 67.9% |
| 4992173 | 4070.1.1.2 ↗ | alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50 | 0.52 | 34.0 | 2.90e-01 | 97.1% | 38.3% |
| 4947478 | 304.26.1.0 ↗ | a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like | 0.51 | 28.0 | 2.96e-01 | 100.0% | 57.9% |
| 3265799 | 304.19.1.3 ↗ | a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › PF30773 | 0.51 | 28.0 | 3.13e-01 | 93.3% | 70.0% |
D4
medium
residues 336-393
Domain cluster:
rep: IMGVR_UViG_3300017642_000002-3300017642-Ga0183098_107108__D357-408
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4c3sA02 | 3.40.309.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 2 › Aldehyde Dehydrogenase; Chain A, domain 2 | 0.64 | 44.0 | 3.11e-01 | 72.4% | 61.8% |
| 3k9dA02 | 3.40.309.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 2 › Aldehyde Dehydrogenase; Chain A, domain 2 | 0.58 | 40.0 | 2.85e-01 | 72.4% | 63.2% |
| 2o0jA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 39.0 | 2.56e-01 | 74.1% | 30.3% |
| 3oymA01 | 1.10.340.70 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › | 0.54 | 37.0 | 3.23e-01 | 74.1% | 66.7% |
| 4fcyB02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.53 | 37.0 | 3.58e-01 | 74.1% | 96.9% |
| 1jhfA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 35.0 | 3.39e-01 | 70.7% | 89.9% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3964284 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.60 | 41.0 | 4.14e-01 | 72.4% | 78.3% |
| 3723827 | 4048.1.1.1 ↗ | alpha bundles › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Catalase-rel | 0.59 | 44.0 | 3.85e-01 | 89.7% | 52.2% |
| 4970239 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.56 | 39.0 | 3.65e-01 | 87.9% | 60.0% |
| 2527977 | 101.1.1.76 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 | 0.52 | 36.0 | 3.46e-01 | 74.1% | 87.3% |