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JQ768459.1__AFH14539.1__Lu11_0008__00008
Bact-VirJQ768459.1__AFH14539.1__Lu11_0008__00008
Identity
- Accession:
- JQ768459 ↗
- Kingdom:
- phage
Quality
74.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 40-124
Domain cluster:
rep: MN047793.1__QDJ96385.1__Xoosp13_199__00199__D20-94
CATH (42)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5zc1D00 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.72 | 52.0 | 4.93e-01 | 75.3% | 96.9% |
| 2zxkA00 | 3.40.1500.20 | Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › | 0.67 | 60.0 | 4.21e-01 | 100.0% | 75.6% |
| 3e1eC00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.67 | 46.0 | 3.87e-01 | 70.6% | 82.3% |
| 1a7tA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.67 | 50.0 | 3.63e-01 | 78.8% | 92.1% |
| 3a9gA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.67 | 52.0 | 3.46e-01 | 83.5% | 44.4% |
| 3jv1A00 | 3.10.280.10 | Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein | 0.67 | 52.0 | 4.05e-01 | 83.5% | 65.4% |
| 3n8bA00 | 3.10.450.700 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.67 | 50.0 | 5.34e-01 | 80.0% | 96.0% |
| 2lnjA00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.66 | 49.0 | 3.94e-01 | 80.0% | 52.4% |
| 3cyjA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.65 | 45.0 | 4.02e-01 | 71.8% | 52.5% |
| 2k4vA00 | 3.30.160.370 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 | 0.65 | 53.0 | 4.64e-01 | 88.2% | 67.2% |
| 3rqbA00 | 2.40.160.210 | Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain | 0.64 | 46.0 | 3.22e-01 | 74.1% | 48.5% |
| 1qhlA00 | 3.40.1140.10 | Alpha Beta › 3-Layer(aba) Sandwich › N-terminal domain of mukB › | 0.64 | 53.0 | 3.96e-01 | 88.2% | 99.5% |
| 4bs9A05 | 3.30.160.660 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.64 | 45.0 | 4.10e-01 | 72.9% | 71.1% |
| 1f2uA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.63 | 47.0 | 3.91e-01 | 80.0% | 85.2% |
| 7x7zA01 | 2.40.480.10 | Mainly Beta › Beta Barrel › AOC barrel-like › Allene oxide cyclase-like | 0.60 | 46.0 | 4.00e-01 | 83.5% | 89.2% |
| 1a2vA03 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.60 | 49.0 | 3.18e-01 | 92.9% | 89.7% |
| 6yfiB01 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.60 | 49.0 | 4.25e-01 | 91.8% | 88.1% |
| 3doaA01 | 2.30.310.10 | Mainly Beta › Roll › ibrinogen binding protein from staphylococcus aureus fold › ibrinogen binding protein from staphylococcus aureus domain | 0.59 | 48.0 | 3.96e-01 | 88.2% | 92.2% |
| 3gxwC00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.59 | 48.0 | 4.63e-01 | 90.6% | 92.0% |
| 1l3aA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.59 | 47.0 | 3.72e-01 | 84.7% | 50.0% |
| 6t5kC00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.59 | 44.0 | 3.31e-01 | 81.2% | 93.8% |
| 1wuoA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.58 | 41.0 | 3.04e-01 | 72.9% | 90.9% |
| 3tw8A01 | 3.30.450.200 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin module | 0.57 | 40.0 | 3.40e-01 | 71.8% | 45.7% |
| 3ebwA01 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.57 | 50.0 | 4.18e-01 | 95.3% | 93.0% |
| 3pg4A00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.57 | 48.0 | 3.55e-01 | 94.1% | 48.7% |
| 2giaA00 | 2.30.31.40 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › | 0.56 | 42.0 | 3.49e-01 | 81.2% | 45.5% |
| 2hzrA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.55 | 45.0 | 3.68e-01 | 89.4% | 88.2% |
| 2nlkA02 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.54 | 44.0 | 3.19e-01 | 90.6% | 75.4% |
| 1xteA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.54 | 37.0 | 3.42e-01 | 71.8% | 79.3% |
| 2ar5A00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.54 | 37.0 | 3.41e-01 | 70.6% | 88.0% |
| 4htgA03 | 3.30.160.40 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain | 0.54 | 43.0 | 4.52e-01 | 87.1% | 93.7% |
| 2rqlA00 | 3.30.160.100 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like | 0.53 | 44.0 | 4.26e-01 | 92.9% | 96.8% |
| 4ge6A00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.53 | 44.0 | 3.11e-01 | 94.1% | 74.9% |
| 2hboA01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.53 | 37.0 | 3.34e-01 | 75.3% | 88.0% |
| 2qpvA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.53 | 40.0 | 3.51e-01 | 82.4% | 66.7% |
| 3wa5B00 | 2.60.120.1690 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 38.0 | 3.41e-01 | 76.5% | 52.4% |
| 2ywqA00 | 3.30.160.100 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like | 0.53 | 40.0 | 3.99e-01 | 82.4% | 100.0% |
| 4r7kA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.52 | 39.0 | 3.22e-01 | 81.2% | 66.7% |
| 3ii7A00 | 2.120.10.80 | Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller | 0.52 | 43.0 | 3.10e-01 | 95.3% | 80.2% |
| 1iz6A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 35.0 | 3.82e-01 | 84.7% | 87.0% |
| 1z6bA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.51 | 34.0 | 2.85e-01 | 81.2% | 40.1% |
| 3a5zB01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 35.0 | 3.94e-01 | 83.5% | 98.4% |
ECOD (50)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3197622 | 4210.1.1.0 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain | 0.79 | 63.0 | 5.83e-01 | 84.7% | 100.0% |
| 3987123 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.73 | 55.0 | 5.40e-01 | 78.8% | 76.7% |
| 4339414 | 243.3.1.1 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin | 0.71 | 50.0 | 4.74e-01 | 72.9% | 90.0% |
| 3574559 | 11.10.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like | 0.70 | 57.0 | 4.88e-01 | 87.1% | 86.9% |
| 4059480 | 881.1.1.37 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PF27270 | 0.69 | 51.0 | 4.07e-01 | 80.0% | 46.9% |
| 3588583 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.67 | 55.0 | 4.61e-01 | 89.4% | 96.6% |
| 3788120 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.67 | 47.0 | 3.11e-01 | 72.9% | 24.4% |
| 3272078 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.66 | 50.0 | 3.44e-01 | 78.8% | 46.8% |
| 3851160 | 5.1.5.61 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Frtz | 0.65 | 55.0 | 3.31e-01 | 91.8% | 39.5% |
| 184719 | 3514.1.1.1 ↗ | a+b two layers › uncharacterized protein PA1076 › uncharacterized protein PA1076 › uncharacterized protein PA1076 › DUF5064 | 0.65 | 53.0 | 4.64e-01 | 88.2% | 67.2% |
| 3615124 | 5.1.3.28 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 | 0.65 | 48.0 | 3.12e-01 | 77.6% | 61.6% |
| 3763123 | 5.1.4.371 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Frtz | 0.65 | 55.0 | 3.49e-01 | 92.9% | 53.6% |
| 3882182 | 220.1.1.132 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › KRIT1_FRMD8_FERM_C | 0.64 | 49.0 | 4.21e-01 | 80.0% | 52.3% |
| 3085049 | 11.1.1.96 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set | 0.64 | 46.0 | 3.97e-01 | 74.1% | 95.3% |
| 3939070 | 11.1.1.1173 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7757 | 0.64 | 52.0 | 4.54e-01 | 87.1% | 93.6% |
| 3933012 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.64 | 53.0 | 3.22e-01 | 90.6% | 75.1% |
| 3535752 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.63 | 47.0 | 3.95e-01 | 77.6% | 67.1% |
| 4880573 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.63 | 46.0 | 3.43e-01 | 77.6% | 92.4% |
| 3993689 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.63 | 45.0 | 4.76e-01 | 74.1% | 100.0% |
| 4343392 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.62 | 44.0 | 4.04e-01 | 72.9% | 80.9% |
| 3527512 | 220.1.1.32 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Sec3-PIP2_bind | 0.61 | 46.0 | 3.94e-01 | 81.2% | 72.1% |
| 3456597 | 897.1.1.1 ↗ | a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 | 0.61 | 48.0 | 3.85e-01 | 84.7% | 64.3% |
| 4995163 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.60 | 52.0 | 3.73e-01 | 94.1% | 77.9% |
| 3641525 | 223.2.1.6 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN | 0.59 | 43.0 | 3.30e-01 | 76.5% | 45.5% |
| 4985272 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.58 | 40.0 | 3.76e-01 | 70.6% | 81.9% |
| 4930094 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.58 | 40.0 | 3.78e-01 | 71.8% | 79.0% |
| 5074491 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.58 | 40.0 | 3.56e-01 | 71.8% | 72.0% |
| 3388794 | 71.2.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like | 0.58 | 49.0 | 3.57e-01 | 92.9% | 74.6% |
| 4975879 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.57 | 40.0 | 3.67e-01 | 71.8% | 80.0% |
| 3321190 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.57 | 50.0 | 3.37e-01 | 97.6% | 52.1% |
| 4476440 | 2004.1.1.1156 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_15, AAA_23, SbcC_Walker_B | 0.57 | 44.0 | 2.82e-01 | 81.2% | 19.5% |
| 4040973 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.57 | 40.0 | 4.28e-01 | 82.4% | 90.0% |
| 5041942 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.57 | 40.0 | 3.69e-01 | 75.3% | 72.2% |
| 3436093 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.56 | 42.0 | 4.37e-01 | 84.7% | 92.0% |
| 4931877 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.56 | 39.0 | 3.58e-01 | 71.8% | 80.9% |
| 4948168 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.56 | 39.0 | 3.60e-01 | 72.9% | 77.3% |
| None | — | 0.55 | 41.0 | 3.09e-01 | 77.6% | 57.2% | |
| 4978525 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.55 | 48.0 | 3.47e-01 | 97.6% | 71.0% |
| 3716903 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.54 | 40.0 | 2.70e-01 | 78.8% | 93.9% |
| 5020457 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 37.0 | 3.48e-01 | 71.8% | 78.2% |
| 5024241 | 330.2.1.5 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 | 0.54 | 41.0 | 4.02e-01 | 82.4% | 96.8% |
| 5079397 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.53 | 42.0 | 4.20e-01 | 84.7% | 96.5% |
| 4878636 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.53 | 42.0 | 3.21e-01 | 90.6% | 45.8% |
| 5069695 | 330.2.1.5 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 | 0.53 | 47.0 | 4.35e-01 | 100.0% | 76.1% |
| None | — | 0.53 | 42.0 | 3.05e-01 | 84.7% | 68.4% | |
| 4982873 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.52 | 36.0 | 3.39e-01 | 70.6% | 79.0% |
| 5061259 | 330.2.1.1 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › Ribosomal_S30AE | 0.52 | 43.0 | 4.14e-01 | 94.1% | 100.0% |
| 4932637 | 330.2.1.0 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) | 0.51 | 39.0 | 3.92e-01 | 85.9% | 98.9% |
| 3259407 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.51 | 42.0 | 4.26e-01 | 98.8% | 98.8% |
| 4937410 | 330.2.1.0 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) | 0.51 | 40.0 | 3.92e-01 | 88.2% | 100.0% |