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JQ768459.1__AFH14565.1__Lu11_0034__00034

Bact-Vir

JQ768459.1__AFH14565.1__Lu11_0034__00034

Identity

Accession:
JQ768459 ↗
Kingdom:
phage

Quality

87.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-103
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1h2cA00 2.70.20.20 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Matrix protein VP40, N-terminal domain 0.68 48.0 4.35e-01 73.1% 99.2%
2crmA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 39.0 4.20e-01 77.4% 68.4%
1cd9B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 44.0 4.39e-01 84.9% 71.4%
4aw7A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.61 35.0 3.30e-01 93.5% 44.1%
1vwxS01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.59 42.0 4.62e-01 76.3% 95.8%
6rptC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 46.0 4.38e-01 84.9% 69.6%
1djsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 40.0 3.96e-01 83.9% 64.7%
5hdwA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.57 43.0 3.86e-01 81.7% 57.3%
5xnrA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 38.0 3.49e-01 89.2% 51.2%
1xvsA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.56 42.0 3.84e-01 81.7% 60.2%
1mkfA02 2.60.40.1340 Mainly Beta › Sandwich › Immunoglobulin-like › Chemokine-binding protein M3-like 0.56 43.0 3.58e-01 83.9% 55.2%
5vqfD01 2.60.120.970 Mainly Beta › Sandwich › Jelly Rolls › 0.55 41.0 3.10e-01 77.4% 50.9%
5nfiB02 2.60.40.2090 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 47.0 4.18e-01 94.6% 77.4%
6z9cA01 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.55 43.0 3.98e-01 84.9% 66.4%
3up6A01 2.60.40.2580 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 40.0 3.42e-01 79.6% 72.9%
4fixA01 3.90.550.60 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › 0.54 36.0 2.40e-01 84.9% 15.6%
4a4aA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 36.0 3.27e-01 84.9% 47.4%
4pwuC00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.54 38.0 4.10e-01 73.1% 100.0%
1alyA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.54 38.0 3.29e-01 73.1% 66.4%
2v3sA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 38.0 3.79e-01 77.4% 70.8%
1jhjA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 38.0 3.20e-01 74.2% 57.1%
1a8mA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.54 38.0 3.32e-01 75.3% 71.1%
2w5fB01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 40.0 3.44e-01 91.4% 48.0%
1dg6A00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.53 38.0 3.29e-01 75.3% 69.8%
2re9A01 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.53 37.0 3.19e-01 74.2% 70.7%
1guiA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 36.0 3.07e-01 71.0% 55.5%
8shiI01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 40.0 3.90e-01 81.7% 78.8%
1s55A00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.52 38.0 3.25e-01 76.3% 68.6%
2hgsA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.52 36.0 3.49e-01 80.6% 61.3%
1tnrA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.52 37.0 3.29e-01 75.3% 72.9%
1pm4A00 2.60.120.510 Mainly Beta › Sandwich › Jelly Rolls › Mitogen Ypm 0.52 35.0 3.33e-01 81.7% 56.4%
1dyoA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 39.0 3.33e-01 80.6% 60.3%
3omzA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 38.0 3.77e-01 79.6% 75.5%
5jtwA03 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 41.0 3.70e-01 84.9% 72.4%
2xtlA02 2.60.40.1140 Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain 0.52 39.0 3.85e-01 93.5% 76.8%
2f1eA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.52 40.0 3.78e-01 84.9% 69.0%
7uzsX03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 3.81e-01 84.9% 73.9%
3nkgA00 2.60.120.790 Mainly Beta › Sandwich › Jelly Rolls › 0.51 42.0 3.51e-01 91.4% 62.4%
3o4lD01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 39.0 3.82e-01 82.8% 74.0%
2petA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 39.0 3.63e-01 80.6% 69.6%
3e1uA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.51 41.0 3.38e-01 90.3% 58.7%
6kxkG01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.51 40.0 3.57e-01 84.9% 81.2%
1wkyA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 35.0 3.06e-01 83.9% 45.8%
1ju3A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 39.0 3.01e-01 82.8% 45.4%
2yrbA01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.51 42.0 3.75e-01 92.5% 77.8%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.50 41.0 3.81e-01 98.9% 69.2%
6tfjA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 34.0 3.23e-01 71.0% 66.1%
1js8B02 2.60.310.10 Mainly Beta › Sandwich › Hemocyanin; Chain: A, domain 2 › Haemocyanin C-terminal domain 0.50 39.0 3.80e-01 86.0% 75.2%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3857127 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.70 44.0 4.57e-01 77.4% 68.2%
3508212 3115.1.1.6 a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494 0.69 49.0 5.53e-01 75.3% 97.1%
3738953 11.1.1.644 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_Pom152 0.65 46.0 4.20e-01 86.0% 55.2%
3892842 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.62 42.0 4.85e-01 73.1% 100.0%
3411669 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 46.0 4.36e-01 80.6% 66.4%
3579397 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.61 41.0 4.01e-01 81.7% 61.0%
3411474 3115.1.1.3 a+b two layers › GP2-like › RplX-like › RplX-like › NRF 0.60 45.0 3.83e-01 80.6% 79.4%
4942869 303.1.1.1 a+b four layers › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › PvlArgDC 0.60 45.0 3.76e-01 80.6% 52.4%
3408263 11.1.1.822 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF229 0.60 39.0 3.88e-01 81.7% 63.2%
3478357 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 46.0 4.08e-01 81.7% 61.5%
None 0.60 47.0 2.88e-01 84.9% 13.7%
2568333 11.1.1.237 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG4 0.60 47.0 4.42e-01 84.9% 69.0%
4958415 11.1.1.103 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB 0.59 43.0 4.08e-01 81.7% 64.5%
1921553 1119.1.1.1 a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW 0.59 40.0 2.97e-01 73.1% 26.1%
4944509 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 40.0 4.00e-01 84.9% 69.5%
3755463 382.1.1.1 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 0.58 44.0 4.50e-01 79.6% 93.3%
3980835 11.1.1.997 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_J 0.58 38.0 3.67e-01 82.8% 58.1%
3700524 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 37.0 3.72e-01 81.7% 64.2%
3909420 11.1.1.129 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Interfer-bind 0.56 38.0 3.84e-01 84.9% 68.4%
4960460 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 44.0 4.09e-01 84.9% 70.8%
3894548 11.1.1.974 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_VWDE 0.56 39.0 3.61e-01 82.8% 56.7%
5014950 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 46.0 3.88e-01 90.3% 74.2%
3897855 10.3.1.1 beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF 0.55 40.0 3.28e-01 76.3% 63.2%
3587814 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 43.0 4.06e-01 84.9% 75.7%
3192002 11.1.1.41 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C 0.55 41.0 3.28e-01 80.6% 67.0%
4982346 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 42.0 4.05e-01 84.9% 72.4%
3992584 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 38.0 3.27e-01 90.3% 43.9%
5005662 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 45.0 3.83e-01 90.3% 72.9%
4932870 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 38.0 4.06e-01 89.2% 86.3%
3390099 11.1.1.536 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1091 0.54 41.0 3.55e-01 81.7% 69.3%
3420481 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.54 46.0 3.79e-01 92.5% 90.9%
3243866 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.54 41.0 4.01e-01 81.7% 75.0%
3525969 11.1.1.239 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG3 0.54 42.0 3.94e-01 83.9% 73.0%
3503762 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 38.0 3.61e-01 80.6% 60.9%
3544291 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 42.0 3.71e-01 84.9% 75.7%
5041452 303.1.1.1 a+b four layers › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › PvlArgDC 0.54 39.0 3.43e-01 79.6% 50.3%
3661827 11.10.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.53 37.0 3.23e-01 73.1% 73.5%
3875781 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 46.0 2.83e-01 95.7% 17.4%
329362 10.3.1.1 beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF 0.53 37.0 3.15e-01 74.2% 67.7%
3797628 11.10.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.53 38.0 3.41e-01 75.3% 53.1%
5068930 303.1.1.1 a+b four layers › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › PvlArgDC 0.53 39.0 3.39e-01 80.6% 49.1%
2530507 220.3.1.3 beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Glycoprot_B_PH1 0.53 44.0 3.40e-01 94.6% 79.4%
3520045 11.1.1.41 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C 0.52 40.0 3.49e-01 84.9% 71.0%
3406668 11.1.1.536 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1091 0.52 39.0 3.38e-01 81.7% 65.0%
4663220 11.1.1.416 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › SPC22 0.52 41.0 3.86e-01 83.9% 77.3%
3234635 11.1.4.63 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF870 0.52 42.0 3.97e-01 90.3% 85.2%
3394457 11.1.1.536 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1091 0.51 39.0 3.31e-01 81.7% 66.5%
3390323 11.1.1.536 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1091 0.51 39.0 3.34e-01 82.8% 65.8%
3739007 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.51 39.0 3.43e-01 81.7% 72.9%
398002 10.32.1.64 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF5625 0.51 42.0 3.48e-01 91.4% 61.8%
3413446 11.1.1.536 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1091 0.51 39.0 3.34e-01 82.8% 71.2%
None 0.51 42.0 3.45e-01 93.5% 53.0%
4960453 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.51 41.0 3.96e-01 90.3% 91.4%
5050550 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.50 42.0 3.88e-01 92.5% 71.7%
4965895 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.50 37.0 3.64e-01 92.5% 73.0%
184963 11.1.1.347 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › T26-6p_Ig-like_dom_2 0.50 38.0 3.23e-01 83.9% 53.9%