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JQ768459.1__AFH14589.1__Lu11_0058__00058

Bact-Vir

JQ768459.1__AFH14589.1__Lu11_0058__00058

Identity

Accession:
JQ768459 ↗
Kingdom:
phage

Quality

94.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pseudomonas_phage_Lu11

TaxID: 1161927

Cluster

View cluster (40 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-76
PDB
Domain cluster: rep: NC_048077.1__YP_009813563.1__HOU32_gp118__00118__D2-70
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4muoA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.53 32.0 3.31e-01 80.0% 62.5%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
333304 6050.1.1.1 ↗ a+b two layers › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage_TAC_1 0.68 60.0 5.41e-01 100.0% 77.9%
3835731 365.1.1.1 ↗ few secondary structure elements › Crambin-like › Crambin-like › Crambin-like › Thionin 0.55 32.0 3.80e-01 70.7% 93.3%
D2 high residues 83-146
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4tn3A01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.66 35.0 4.10e-01 75.0% 77.5%
1wh2A01 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.66 41.0 4.17e-01 75.0% 65.6%
2yu4A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.66 53.0 4.73e-01 90.6% 73.4%
5hkxA04 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.65 42.0 4.86e-01 75.0% 95.5%
1wjvA01 3.30.1490.490 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.62 36.0 3.88e-01 76.6% 68.6%
5i0fB04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.60 35.0 3.19e-01 79.7% 44.0%
1yc5A02 3.30.1600.10 Alpha Beta › 2-Layer Sandwich › SIR2/SIRT2 'Small Domain' › SIR2/SIRT2 'Small Domain' 0.60 38.0 3.52e-01 76.6% 50.0%
2lvhA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.59 40.0 4.59e-01 82.8% 100.0%
2cklB01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.58 45.0 4.36e-01 84.4% 78.9%
7ecrA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 39.0 2.77e-01 70.3% 30.1%
3nuhB02 3.30.300.370 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.56 39.0 3.25e-01 73.4% 43.8%
3ztgA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.55 43.0 3.95e-01 90.6% 71.7%
2qkdA02 2.60.120.1040 Mainly Beta › Sandwich › Jelly Rolls › ZPR1, A/B domain 0.54 43.0 3.60e-01 100.0% 100.0%
3l2pA03 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.53 33.0 2.78e-01 89.1% 33.3%
1ktbA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.52 33.0 3.02e-01 81.2% 45.1%
1rypK00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.52 39.0 2.95e-01 87.5% 90.4%
2bayE00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.52 35.0 3.67e-01 79.7% 79.7%
5f1mA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.51 39.0 2.73e-01 89.1% 74.0%
3ct9A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 37.0 3.15e-01 85.9% 46.7%
6nw1A00 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.51 34.0 3.96e-01 75.0% 100.0%
3vk6A01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.51 39.0 4.01e-01 82.8% 94.9%
2gx8A02 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 39.0 3.51e-01 90.6% 100.0%
5trbA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.50 38.0 3.78e-01 84.4% 85.5%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3741503 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.71 53.0 4.49e-01 79.7% 56.2%
3397204 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.70 54.0 4.64e-01 82.8% 54.0%
None — 0.70 38.0 4.42e-01 76.6% 75.6%
3593825 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.70 54.0 5.00e-01 85.9% 83.5%
3823407 386.1.1.14 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-LYAR 0.68 37.0 3.84e-01 76.6% 56.7%
3702317 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.67 50.0 4.99e-01 78.1% 84.6%
3601198 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.67 54.0 4.74e-01 90.6% 69.0%
4438208 835.1.1.1 ↗ a+b complex topology › Proguanylin › Proguanylin › Proguanylin › Guanylin 0.66 47.0 4.27e-01 75.0% 100.0%
4023525 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.66 49.0 4.25e-01 79.7% 59.0%
3454962 904.1.1.0 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain 0.66 40.0 4.43e-01 79.7% 78.0%
3305957 904.1.1.1 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box 0.65 40.0 4.26e-01 79.7% 70.9%
3822672 376.1.1.59 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-B_box 0.65 40.0 4.12e-01 79.7% 65.0%
3614999 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.64 48.0 4.37e-01 82.8% 74.4%
4019692 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.64 52.0 4.33e-01 90.6% 69.6%
3689755 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.64 51.0 4.49e-01 90.6% 75.0%
3202350 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.63 47.0 4.22e-01 79.7% 64.4%
4248233 376.1.1.15 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-Nse 0.63 50.0 4.47e-01 87.5% 73.1%
3744884 376.1.1.66 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_16 0.63 47.0 4.52e-01 81.2% 69.9%
3793771 376.1.1.15 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-Nse 0.63 47.0 4.28e-01 81.2% 65.9%
3240279 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.63 49.0 4.50e-01 85.9% 80.0%
3217685 822.1.1.0 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain 0.62 39.0 4.12e-01 75.0% 70.7%
3314956 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.62 39.0 4.32e-01 82.8% 82.0%
3253098 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.61 46.0 4.10e-01 82.8% 61.1%
3927096 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.61 48.0 4.47e-01 85.9% 75.0%
3713646 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.61 49.0 4.16e-01 90.6% 68.2%
3299009 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.61 45.0 4.10e-01 79.7% 77.6%
4643287 4012.1.1.0 ↗ a+b two layers › SSHS domain › SSHS domain in type II DNA topoisomerase › SSHS domain in type II DNA topoisomerase 0.60 43.0 3.34e-01 76.6% 84.0%
3681044 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.60 48.0 4.32e-01 90.6% 74.7%
3305271 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.60 45.0 4.08e-01 82.8% 76.7%
4956096 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 44.0 4.33e-01 78.1% 94.3%
4113441 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.60 42.0 4.38e-01 76.6% 83.3%
3690656 376.1.1.15 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-Nse 0.60 47.0 4.10e-01 87.5% 70.0%
3196969 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.59 39.0 3.83e-01 79.7% 62.9%
4946420 376.1.1.180 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ResIII 0.59 42.0 4.23e-01 84.4% 75.4%
3393461 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.59 44.0 3.58e-01 81.2% 60.8%
3797398 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.58 43.0 4.05e-01 79.7% 68.8%
4004083 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.58 47.0 4.06e-01 90.6% 63.1%
3622461 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.58 43.0 4.31e-01 82.8% 83.1%
4945437 2010.1.1.1 ↗ a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › DegV 0.57 41.0 3.12e-01 78.1% 37.1%
3532400 376.1.1.22 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.57 40.0 4.07e-01 79.7% 73.8%
4019073 4154.1.1.0 ↗ beta duplicates or obligate multimers › E2F-DP heterodimerization region › E2F-DP heterodimerization region › E2F-DP heterodimerization region 0.57 42.0 3.70e-01 81.2% 70.0%
4026153 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.57 39.0 3.98e-01 84.4% 73.8%
4000760 2003.1.4.5 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › DHS-like NAD/FAD-binding domain › SIR2 0.56 43.0 2.84e-01 82.8% 23.8%
3869469 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.56 42.0 3.41e-01 84.4% 72.9%
3495529 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.56 37.0 3.87e-01 70.3% 78.2%
3665223 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.56 46.0 4.03e-01 93.8% 70.0%
3686300 376.1.1.27 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.56 42.0 4.23e-01 81.2% 81.5%
3790868 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.56 43.0 3.57e-01 85.9% 50.0%
5051919 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.56 44.0 4.02e-01 85.9% 76.5%
2811279 376.1.1.15 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-Nse 0.55 44.0 4.06e-01 89.1% 75.3%
3818416 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.55 39.0 3.66e-01 84.4% 60.0%
3712580 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.55 36.0 3.14e-01 79.7% 41.0%
4001214 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.55 43.0 3.89e-01 87.5% 70.0%
3855040 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.55 37.0 3.54e-01 81.2% 57.5%
3700891 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.55 44.0 4.01e-01 90.6% 73.0%
3339917 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.55 40.0 3.79e-01 79.7% 68.8%
3229025 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.53 37.0 3.57e-01 79.7% 62.7%
None — 0.52 40.0 3.90e-01 84.4% 78.6%
3653237 376.1.1.22 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.52 40.0 3.80e-01 84.4% 82.7%
3948935 7048.1.1.1 ↗ a+b complex topology › head domain of ScoMcrA › head domain of ScoMcrA › head domain of ScoMcrA › ScoMcrA_N 0.52 37.0 3.45e-01 78.1% 68.2%
4507341 3675.1.1.0 ↗ a+b complex topology › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain 0.51 38.0 3.03e-01 84.4% 84.5%
3613855 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.51 36.0 3.48e-01 75.0% 100.0%
4946824 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 39.0 2.73e-01 85.9% 37.3%
4961283 101.1.2.935 ↗ alpha arrays › HTH › HTH › winged helix domain › HVO_B0008_C 0.50 35.0 2.99e-01 73.4% 92.7%
D3 medium residues 147-260
PDB
Domain cluster: representative