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JQ768459.1__AFH14609.1__Lu11_0077__00078

Bact-Vir

JQ768459.1__AFH14609.1__Lu11_0077__00078

Identity

Accession:
JQ768459 ↗
Kingdom:
phage

Quality

69.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pseudomonas_phage_Lu11

TaxID: 1161927

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-85
PDB
Domain cluster: rep: NC_061451.1__YP_010303282.1__MPK74_gp141__00141__D18-97
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF20294.5 best KMPT-N 52.6 5.30e-14 83.1% 100.0%
D2 high residues 129-218
PDB
Domain cluster: rep: NC_061451.1__YP_010303282.1__MPK74_gp141__00141__D18-97
D3 high residues 345-422
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.76 50.0 5.54e-01 71.8% 84.1%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.74 49.0 5.41e-01 70.5% 84.1%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 49.0 5.37e-01 70.5% 85.5%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 46.0 4.98e-01 71.8% 78.5%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 47.0 5.02e-01 71.8% 80.3%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.71 42.0 4.73e-01 73.1% 77.0%
2efiA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 44.0 4.06e-01 71.8% 52.0%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 44.0 5.11e-01 71.8% 98.1%
3u4zA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 50.0 4.43e-01 78.2% 92.7%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 45.0 4.62e-01 70.5% 77.3%
2ra6C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.64 52.0 4.25e-01 88.5% 95.8%
1mruA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.63 43.0 4.10e-01 70.5% 84.8%
6bogA02 2.30.30.930 Mainly Beta › Roll › SH3 type barrels. › 0.63 43.0 4.80e-01 80.8% 93.3%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 43.0 4.44e-01 71.8% 73.7%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 43.0 4.62e-01 75.6% 84.6%
2r0cA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.62 46.0 3.13e-01 76.9% 50.2%
5cqfA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.62 43.0 2.70e-01 73.1% 33.9%
3s5wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 45.0 2.84e-01 78.2% 38.3%
1dlcA03 2.100.10.10 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain 0.61 43.0 3.18e-01 73.1% 99.5%
4tm3A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 44.0 2.77e-01 76.9% 34.8%
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.60 42.0 3.87e-01 76.9% 54.8%
4edjA02 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.60 49.0 4.52e-01 88.5% 94.9%
1ebdA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 41.0 3.55e-01 73.1% 75.2%
4cy8A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 45.0 3.12e-01 80.8% 60.5%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 41.0 4.21e-01 73.1% 87.7%
7r8iA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.58 46.0 3.45e-01 88.5% 87.1%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 46.0 3.88e-01 89.7% 95.1%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.58 43.0 4.00e-01 80.8% 82.7%
2d9uA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 37.0 3.86e-01 73.1% 68.9%
3ecrB03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.57 39.0 3.58e-01 70.5% 73.5%
2xlpB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 46.0 2.95e-01 85.9% 50.1%
8aa0E01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.56 50.0 3.35e-01 100.0% 45.1%
1xjvA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 46.0 3.84e-01 96.2% 96.6%
2qcuB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 44.0 3.13e-01 85.9% 62.4%
4c0dB00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.55 37.0 2.84e-01 70.5% 29.8%
3al9A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 48.0 2.98e-01 100.0% 34.2%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 36.0 3.55e-01 75.6% 65.1%
3jcuB02 3.10.680.10 Alpha Beta › Roll › Photosystem II CP47 reaction center protein › Photosystem II CP47 reaction center protein 0.53 37.0 2.91e-01 74.4% 34.7%
1o97D01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.53 42.0 3.24e-01 89.7% 88.9%
3b7kB01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 44.0 3.71e-01 97.4% 97.1%
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.52 37.0 2.78e-01 76.9% 29.1%
4o38A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 47.0 4.35e-01 98.7% 100.0%
1sxjH01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.51 40.0 3.47e-01 85.9% 89.5%
1yemB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.50 42.0 3.41e-01 98.7% 59.0%
ECOD (71)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4938828 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 47.0 5.24e-01 70.5% 78.3%
4936051 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 50.0 5.71e-01 74.4% 96.4%
4436471 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.75 45.0 4.06e-01 78.2% 45.7%
4426764 2.4.1.12 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.73 44.0 3.97e-01 78.2% 45.6%
4481026 4.1.1.407 ↗ beta barrels › SH3 › SH3 › SH3 › PF29661 0.73 47.0 5.28e-01 73.1% 86.7%
5026289 2.4.1.7 ↗ beta barrels › OB-fold › MOP-like › MOP-like › OB_MalK 0.72 44.0 3.70e-01 71.8% 38.4%
4994388 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.72 42.0 4.24e-01 71.8% 58.2%
4325086 2.4.1.11 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3 0.72 45.0 4.03e-01 71.8% 47.6%
5071787 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.72 48.0 4.00e-01 74.4% 41.5%
3974328 2.4.1.11 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3 0.71 46.0 4.53e-01 79.5% 61.2%
4001579 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.71 49.0 4.21e-01 70.5% 74.8%
4587696 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.71 48.0 4.41e-01 74.4% 55.0%
4329624 2.4.1.12 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.70 47.0 4.21e-01 79.5% 50.5%
4057742 2.4.1.11 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3 0.70 47.0 5.14e-01 79.5% 83.1%
4497599 2.4.1.11 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3 0.70 48.0 4.32e-01 79.5% 52.4%
4515154 2.4.1.12 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.70 47.0 4.10e-01 79.5% 47.0%
5035742 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 47.0 5.19e-01 73.1% 90.0%
4187163 2.4.1.12 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.70 47.0 4.09e-01 80.8% 47.0%
4123140 2.4.1.12 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.69 46.0 4.08e-01 73.1% 49.1%
3230021 2.1.1.126 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF272 0.69 52.0 5.20e-01 79.5% 96.2%
4153968 2.4.1.11 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3 0.68 44.0 3.94e-01 71.8% 48.6%
4938919 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 46.0 4.94e-01 73.1% 83.1%
3730229 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.67 45.0 4.58e-01 71.8% 70.7%
4994226 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.67 47.0 3.92e-01 71.8% 48.0%
3829476 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.67 46.0 3.53e-01 71.8% 38.9%
4945471 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 46.0 4.94e-01 73.1% 86.2%
5021205 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.67 46.0 3.85e-01 71.8% 50.0%
4086268 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.67 46.0 4.42e-01 74.4% 62.2%
165654 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.67 50.0 5.11e-01 78.2% 86.5%
3227979 2.1.1.126 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF272 0.66 51.0 4.90e-01 82.1% 93.3%
3281927 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.66 42.0 3.61e-01 73.1% 40.8%
4272564 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.66 56.0 5.00e-01 92.3% 73.1%
5044393 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 45.0 5.02e-01 70.5% 91.7%
3592221 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 45.0 3.99e-01 73.1% 67.8%
3234647 69.1.2.1 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › AXH › AXH 0.65 46.0 4.03e-01 74.4% 61.4%
3947700 4.8.1.25 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DSRB 0.64 45.0 4.91e-01 73.1% 92.1%
5017342 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.64 47.0 3.85e-01 84.6% 43.7%
3279470 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.64 51.0 4.92e-01 96.2% 75.6%
4422252 4.1.1.455 ↗ beta barrels › SH3 › SH3 › SH3 › DSRB 0.63 43.0 4.79e-01 70.5% 91.7%
3163776 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.63 45.0 3.78e-01 74.4% 44.6%
4948812 2003.1.2.297 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_dim 0.62 44.0 2.74e-01 73.1% 23.1%
3281618 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.62 54.0 4.95e-01 96.2% 82.0%
3978997 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.60 52.0 4.90e-01 96.2% 81.1%
3598363 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.60 43.0 2.78e-01 74.4% 27.9%
4943707 2003.1.3.78 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO_C 0.60 47.0 3.26e-01 82.1% 60.4%
5017041 2003.1.2.22 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GMC_oxred_C 0.60 46.0 3.19e-01 82.1% 74.7%
3942912 4.1.1.323 ↗ beta barrels › SH3 › SH3 › SH3 › WYL 0.60 52.0 5.05e-01 96.2% 90.6%
5077487 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.60 42.0 3.47e-01 74.4% 42.1%
4935198 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.59 41.0 3.26e-01 73.1% 67.5%
4935792 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.59 41.0 3.26e-01 73.1% 66.9%
3214958 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.59 45.0 3.05e-01 80.8% 77.5%
4939899 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.58 41.0 2.95e-01 73.1% 48.0%
3415181 2003.1.2.6 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like,NAD_binding_8 0.58 45.0 3.00e-01 82.1% 48.9%
3953109 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.58 50.0 4.69e-01 96.2% 80.0%
4545520 4.7.1.7 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › WYL 0.58 49.0 4.86e-01 96.2% 88.2%
3783168 2003.1.2.5 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like 0.58 45.0 2.91e-01 82.1% 51.2%
3280641 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.58 49.0 4.59e-01 96.2% 76.0%
3393343 2003.1.2.5 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like 0.57 46.0 3.02e-01 85.9% 49.7%
4083857 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.57 43.0 3.64e-01 82.1% 91.4%
3283097 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.57 48.0 4.35e-01 94.9% 73.6%
3842363 1.1.5.76 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › CABIT 0.57 42.0 3.80e-01 79.5% 61.8%
3770803 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.57 42.0 3.79e-01 79.5% 61.8%
4031510 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 49.0 4.76e-01 98.7% 88.9%
3670182 2.1.1.1 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 0.56 40.0 3.45e-01 74.4% 46.4%
3972550 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.54 45.0 4.24e-01 94.9% 80.0%
3255468 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.53 47.0 3.42e-01 100.0% 55.1%
3646441 2484.1.1.205 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27035 0.53 42.0 3.83e-01 88.5% 96.4%
3564215 71.1.1.14 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › GPCR_chapero_1 0.53 40.0 2.95e-01 82.1% 82.5%
3509389 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.51 36.0 3.15e-01 75.6% 67.7%
4457428 2.4.1.11 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3 0.51 47.0 4.16e-01 100.0% 83.6%
4268790 2.4.1.12 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.51 46.0 3.87e-01 98.7% 62.3%