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JQ768459.1__AFH14645.1__Lu11_0113__00114
Bact-VirJQ768459.1__AFH14645.1__Lu11_0113__00114
Identity
- Accession:
- JQ768459 ↗
- Kingdom:
- phage
Quality
84.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-109
Domain cluster:
rep: JN638751.1__AEO93584.1__G_325__00317__D18-116
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01981.22 best | PTH2 | 25.4 | 1.90e-05 | 87.0% | 78.3% |
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2vfrA03 | 3.30.70.2530 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 32.0 | 3.53e-01 | 100.0% | 70.1% |
| 3onmA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.54 | 39.0 | 4.17e-01 | 86.1% | 85.4% |
| 3vfiA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.54 | 33.0 | 3.41e-01 | 92.6% | 62.5% |
| 1nw2A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.53 | 33.0 | 3.34e-01 | 92.6% | 62.9% |
| 5j7dC00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.52 | 32.0 | 3.29e-01 | 92.6% | 62.3% |
| 3zs6A03 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.51 | 45.0 | 3.68e-01 | 100.0% | 79.3% |
| 3fd3A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.51 | 37.0 | 3.82e-01 | 85.2% | 78.3% |
| 2fyiC01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.51 | 39.0 | 3.72e-01 | 86.1% | 69.3% |
| 1jetA03 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.51 | 45.0 | 3.63e-01 | 100.0% | 79.2% |
| 2fltA00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.51 | 41.0 | 4.03e-01 | 88.9% | 97.4% |
| 4fajA03 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.50 | 44.0 | 3.58e-01 | 100.0% | 81.6% |
| 2ql3A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.50 | 38.0 | 3.98e-01 | 86.1% | 87.9% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3702490 | 2501.1.1.1 ↗ | a/b three-layered sandwiches › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › PTH2 | 0.85 | 80.0 | 7.35e-01 | 100.0% | 91.2% |
| 3595444 | 2501.1.1.0 ↗ | a/b three-layered sandwiches › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II | 0.83 | 78.0 | 7.14e-01 | 100.0% | 92.6% |
| 5030351 | 2501.1.1.1 ↗ | a/b three-layered sandwiches › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › PTH2 | 0.82 | 77.0 | 7.52e-01 | 100.0% | 98.3% |
| 3628884 | 2501.1.1.1 ↗ | a/b three-layered sandwiches › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › PTH2 | 0.78 | 73.0 | 7.20e-01 | 100.0% | 98.2% |
| 3354413 | 2501.1.1.1 ↗ | a/b three-layered sandwiches › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › PTH2 | 0.78 | 72.0 | 6.97e-01 | 100.0% | 95.0% |
| 4370818 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.62 | 32.0 | 4.26e-01 | 84.3% | 100.0% |
| 3989329 | 315.1.1.0 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF | 0.54 | 38.0 | 4.07e-01 | 88.9% | 84.2% |
| 5023262 | 327.11.2.82 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › PF27275 | 0.53 | 30.0 | 3.66e-01 | 95.4% | 90.8% |
| 3345073 | 298.3.1.2 ↗ | a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like › PGDH_inter | 0.53 | 42.0 | 3.74e-01 | 96.3% | 59.4% |
| 3709544 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.52 | 39.0 | 4.03e-01 | 92.6% | 81.9% |
| 3413344 | 304.48.1.4 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Guanylate_cyc | 0.52 | 46.0 | 3.57e-01 | 98.1% | 56.2% |
| 4948555 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.51 | 30.0 | 3.10e-01 | 99.1% | 59.0% |
| 3685153 | 2485.1.1.39 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › GST_N_2 | 0.51 | 34.0 | 3.53e-01 | 87.0% | 73.0% |
| 3702049 | 2485.1.1.12 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › SCO1-SenC | 0.51 | 36.0 | 3.30e-01 | 92.6% | 53.3% |
| 4589610 | 7523.1.1.15 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate | 0.50 | 35.0 | 3.47e-01 | 86.1% | 67.8% |
D2
medium
residues 126-206
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01476.27 best | LysM | 40.6 | 2.80e-10 | 51.8% | 93.0% |
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1a9xA04 | 1.10.1030.10 | Mainly Alpha › Orthogonal Bundle › Carbamoyl Phosphate Synthetase; Chain A, domain 4 › Carbamoyl-phosphate synthetase, large subunit oligomerisation domain | 0.59 | 49.0 | 4.08e-01 | 93.8% | 89.3% |
| 5douA01 | 1.10.1030.10 | Mainly Alpha › Orthogonal Bundle › Carbamoyl Phosphate Synthetase; Chain A, domain 4 › Carbamoyl-phosphate synthetase, large subunit oligomerisation domain | 0.58 | 45.0 | 3.61e-01 | 85.2% | 48.0% |
| 3qkxB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.57 | 47.0 | 3.72e-01 | 92.6% | 97.2% |
| 3aqtA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.56 | 45.0 | 3.47e-01 | 88.9% | 81.5% |
| 3jsjC00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.54 | 43.0 | 3.40e-01 | 88.9% | 89.6% |
| 3bcgA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.54 | 38.0 | 2.85e-01 | 72.8% | 59.9% |
| 2uxuB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.54 | 38.0 | 2.87e-01 | 72.8% | 62.4% |
| 3nxcA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.54 | 45.0 | 3.58e-01 | 96.3% | 91.5% |
| 3bhqA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.52 | 43.0 | 3.30e-01 | 92.6% | 78.7% |
| 2aj4B03 | 1.20.1440.340 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.51 | 39.0 | 3.08e-01 | 81.5% | 43.2% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3359799 | 101.15.1.10 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM2_NFP | 0.82 | 57.0 | 4.73e-01 | 71.6% | 79.7% |
| 4069716 | 101.15.1.14 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM, LysM2_CERK1_LYK3_4_5 | 0.80 | 58.0 | 5.02e-01 | 75.3% | 84.2% |
| 2968802 | 101.15.1.11 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM1_NFP_LYK, LysM2_NFP | 0.75 | 52.0 | 4.36e-01 | 72.8% | 73.9% |
| 2124476 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.69 | 51.0 | 4.18e-01 | 76.5% | 59.3% |
| 3990074 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.66 | 45.0 | 4.16e-01 | 71.6% | 66.7% |
| 3337328 | 101.15.1.14 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM, LysM2_CERK1_LYK3_4_5 | 0.66 | 61.0 | 4.07e-01 | 100.0% | 54.2% |
| 3381619 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.65 | 60.0 | 4.03e-01 | 100.0% | 52.2% |
| 3417561 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.65 | 59.0 | 3.96e-01 | 100.0% | 51.2% |
| 3670445 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.63 | 58.0 | 3.85e-01 | 100.0% | 49.4% |
| 4137479 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.61 | 54.0 | 5.36e-01 | 98.8% | 90.6% |
| 3592257 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.61 | 49.0 | 3.58e-01 | 86.4% | 60.9% |
| 2124918 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.60 | 56.0 | 4.61e-01 | 98.8% | 75.7% |
| 4379136 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.57 | 52.0 | 4.53e-01 | 96.3% | 91.3% |
| 2035755 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.55 | 52.0 | 4.83e-01 | 100.0% | 92.9% |