Back to structures

JQ768459.1__AFH14692.1__Lu11_0158__00161

Bact-Vir

JQ768459.1__AFH14692.1__Lu11_0158__00161

Identity

Accession:
JQ768459 ↗
Kingdom:
phage

Quality

76.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-123
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5hayA02 1.25.40.440 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Nucleoporin, helical domain, central subdomain 0.72 35.0 4.20e-01 74.0% 69.6%
7c1iA01 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.60 46.0 5.01e-01 99.2% 99.0%
1y4cA03 1.20.120.660 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain 0.57 44.0 4.56e-01 81.3% 98.2%
1orjD00 1.20.120.340 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS 0.56 43.0 4.28e-01 80.5% 89.6%
2q00B00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.55 35.0 3.53e-01 94.3% 63.9%
4gtnA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.54 28.0 3.46e-01 85.4% 81.1%
2lt3A01 1.20.58.1290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › CarD-like, C-terminal domain 0.54 31.0 3.39e-01 76.4% 68.0%
1h6gA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.53 40.0 4.02e-01 78.9% 100.0%
2zihC00 1.10.3630.10 Mainly Alpha › Orthogonal Bundle › yeast vps74-n-term truncation variant fold › yeast vps74-n-term truncation variant domain like 0.52 43.0 3.33e-01 89.4% 78.9%
3h5qA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.52 27.0 3.45e-01 88.6% 87.1%
1s7iA00 3.30.70.1060 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel 0.51 26.0 2.63e-01 75.6% 43.5%
4f3xA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.50 36.0 2.83e-01 74.8% 97.2%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3670055 109.4.1.109 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sel1 0.79 43.0 3.80e-01 72.4% 38.8%
3395879 109.4.1.109 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sel1 0.64 45.0 3.48e-01 73.2% 38.1%
4156742 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 54.0 4.64e-01 91.9% 85.9%
3253939 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.59 45.0 4.63e-01 82.1% 100.0%
54382 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.53 39.0 3.98e-01 78.9% 99.2%
4182665 601.1.1.1 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Vinculin 0.51 38.0 3.55e-01 80.5% 75.0%
D2 high residues 260-333
PDB
Domain cluster: representative
CATH (69)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1f45B00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.88 62.0 4.94e-01 73.0% 45.1%
1ku9A02 1.10.287.450 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.87 62.0 6.62e-01 73.0% 100.0%
6wv5A01 1.20.1440.130 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › VKOR domain 0.87 66.0 5.26e-01 79.7% 43.4%
1b5lA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.85 59.0 4.55e-01 78.4% 34.9%
3rklA00 6.10.140.1640 Special › Helix non-globular › Helix Hairpins › 0.85 65.0 6.32e-01 81.1% 73.8%
4dylA02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.85 69.0 6.27e-01 85.1% 100.0%
7ymiZ01 1.10.287.740 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre 0.84 62.0 6.98e-01 81.1% 100.0%
3okqA00 1.20.58.1540 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Actin interacting protein 3, C-terminal domain 0.83 70.0 5.81e-01 90.5% 58.4%
3t98B00 6.10.140.1350 Special › Helix non-globular › Helix Hairpins › 0.82 69.0 6.57e-01 89.2% 88.4%
3k3oA02 1.20.58.1360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.82 58.0 5.55e-01 74.3% 64.3%
1skvA00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.82 66.0 7.06e-01 86.5% 100.0%
6r1nA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.82 71.0 6.28e-01 93.2% 68.0%
1cunA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.81 60.0 5.38e-01 78.4% 71.6%
3sjqC00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.81 67.0 6.58e-01 89.2% 88.7%
1lvfB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.81 67.0 5.94e-01 89.2% 66.3%
3qo8A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.80 69.0 6.05e-01 93.2% 66.0%
2d4uB00 1.20.120.30 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartate receptor, ligand-binding domain 0.80 64.0 4.91e-01 85.1% 41.3%
3r84A00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.78 66.0 6.43e-01 91.9% 93.8%
1z0pA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.78 61.0 6.23e-01 83.8% 87.7%
1ij5A01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.78 61.0 6.12e-01 85.1% 81.6%
2ch7A00 1.10.287.950 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein 0.78 69.0 4.53e-01 98.6% 25.9%
1u7lA02 1.20.1460.10 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 0.77 65.0 4.74e-01 89.2% 39.3%
2b5uA02 1.10.287.620 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix Hairpins 0.77 69.0 5.32e-01 98.6% 85.7%
2a3qA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.77 62.0 5.29e-01 85.1% 57.5%
3rq9A00 1.10.287.2500 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.77 59.0 5.86e-01 85.1% 78.2%
4nb5B02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.77 62.0 6.55e-01 94.6% 100.0%
3lssA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.76 67.0 5.80e-01 97.3% 66.1%
1i4dA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.76 67.0 5.01e-01 100.0% 74.5%
3layF00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.76 60.0 5.89e-01 83.8% 84.6%
1qu7A00 1.10.287.950 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein 0.75 68.0 4.77e-01 100.0% 58.6%
1gnlA01 1.20.1270.20 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.75 54.0 4.36e-01 77.0% 40.3%
3g67A00 1.10.287.950 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein 0.75 67.0 4.80e-01 100.0% 37.6%
1yg2A02 6.10.140.190 Special › Helix non-globular › Helix Hairpins › 0.74 57.0 5.41e-01 83.8% 83.3%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.74 63.0 6.28e-01 93.2% 93.5%
4nsmA00 6.10.250.2770 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.74 59.0 6.02e-01 86.5% 98.6%
1a36A04 1.10.132.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.73 67.0 4.99e-01 100.0% 44.6%
4hwhE00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.73 54.0 5.10e-01 79.7% 65.9%
2yf4F00 1.10.3420.10 Mainly Alpha › Orthogonal Bundle › putative ntp pyrophosphohydrolase like fold › putative ntp pyrophosphohydrolase like domain 0.73 58.0 4.66e-01 86.5% 44.8%
2y39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.73 63.0 5.46e-01 94.6% 65.5%
2wmmA01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.73 47.0 5.42e-01 73.0% 100.0%
1wleA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.72 59.0 5.19e-01 91.9% 75.4%
3l9fA02 6.10.140.1570 Special › Helix non-globular › Helix Hairpins › 0.72 57.0 5.55e-01 85.1% 81.5%
2ccyA00 1.20.120.10 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 0.72 54.0 4.52e-01 81.1% 48.0%
2gtaA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.71 54.0 4.90e-01 83.8% 60.8%
3wd6A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.71 51.0 4.42e-01 78.4% 48.3%
3v5uA01 6.10.280.80 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › NCX, peripheral helical region 0.71 60.0 6.00e-01 94.6% 96.1%
1wa8A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.71 60.0 5.46e-01 94.6% 71.7%
2ficB00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.70 61.0 4.51e-01 98.6% 73.1%
3i2wA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.70 62.0 4.26e-01 100.0% 71.7%
3fd9A03 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.70 57.0 5.73e-01 90.5% 93.2%
2lmgA00 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.70 47.0 4.77e-01 83.8% 70.3%
2gtsA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.68 56.0 5.61e-01 93.2% 94.8%
1u5pA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 55.0 4.96e-01 91.9% 65.7%
6zhiB02 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.68 51.0 4.92e-01 86.5% 71.1%
4dloB02 1.25.40.610 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.68 46.0 3.96e-01 71.6% 44.4%
4mycA01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.67 57.0 3.79e-01 98.6% 22.9%
1vx7301 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.67 52.0 5.26e-01 86.5% 86.5%
1m62A00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.66 49.0 4.62e-01 77.0% 67.8%
2kp8A00 1.20.5.170 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.65 54.0 5.48e-01 91.9% 94.4%
3cbuA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.65 47.0 3.89e-01 77.0% 53.0%
6iknD01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.65 55.0 3.84e-01 98.6% 28.5%
2lpeA01 6.10.140.1120 Special › Helix non-globular › Helix Hairpins › 0.64 50.0 4.96e-01 89.2% 83.3%
4kb2A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.63 53.0 4.70e-01 93.2% 77.1%
3favD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.60 52.0 5.16e-01 98.6% 93.6%
2mpnA00 6.10.140.1340 Special › Helix non-globular › Helix Hairpins › 0.59 44.0 4.61e-01 82.4% 92.6%
6qumQ00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.59 47.0 4.77e-01 90.5% 94.6%
3o60A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.58 43.0 3.22e-01 78.4% 41.8%
1tj7A01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.57 38.0 3.42e-01 100.0% 48.6%
4nphA02 1.20.1270.330 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.52 42.0 4.25e-01 89.2% 89.2%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3587855 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.93 61.0 7.38e-01 70.3% 100.0%
3784566 604.1.1.191 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF29057 0.88 70.0 6.19e-01 82.4% 61.0%
3617789 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.88 66.0 4.62e-01 78.4% 27.6%
4964259 5055.1.1.0 extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel 0.88 60.0 6.87e-01 70.3% 94.5%
3754639 150.5.1.106 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › LIN9_C 0.87 74.0 7.05e-01 90.5% 85.9%
3725560 150.1.2.19 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Heme oxygenase/Ribonucleotide reductase › COQ7 0.87 74.0 5.23e-01 90.5% 37.1%
2485668 7025.1.1.2 alpha bundles › LIN9-LIN52 heterodimer › LIN9-LIN52 heterodimer › LIN9-LIN52 heterodimer › LIN9_C 0.87 73.0 6.99e-01 89.2% 85.7%
4177674 4992.1.1.23 extended segments › RelB-like › RelB-like › RelB-like › Seryl_tRNA_N 0.87 76.0 6.52e-01 93.2% 66.4%
4058767 7015.1.1.0 alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain 0.86 69.0 5.49e-01 85.1% 48.6%
4209030 4336.1.1.1 alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › Com_YlbF 0.86 58.0 4.94e-01 70.3% 45.6%
3734558 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.85 77.0 4.15e-01 94.6% 6.4%
3477418 4992.1.1.12 extended segments › RelB-like › RelB-like › RelB-like › LIN9_C 0.85 73.0 6.61e-01 90.5% 76.8%
3798353 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.85 73.0 5.68e-01 91.9% 56.7%
3306934 632.1.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.84 77.0 6.66e-01 98.6% 71.8%
3315624 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.84 75.0 6.52e-01 97.3% 68.2%
3450792 632.1.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.84 76.0 6.24e-01 97.3% 63.2%
3933048 4992.1.1.12 extended segments › RelB-like › RelB-like › RelB-like › LIN9_C 0.84 71.0 6.33e-01 90.5% 72.0%
5078219 3684.1.1.0 alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like 0.84 75.0 5.54e-01 95.9% 53.1%
3423731 632.1.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.84 76.0 6.07e-01 97.3% 59.3%
4000148 605.2.1.0 alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 0.84 72.0 6.58e-01 94.6% 71.6%
3417174 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.83 69.0 5.45e-01 89.2% 47.9%
3840952 601.19.1.39 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › LIN9_C 0.83 72.0 7.22e-01 93.2% 96.0%
4992667 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.83 72.0 4.74e-01 93.2% 27.3%
3204414 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.83 76.0 4.73e-01 100.0% 26.0%
3252433 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.82 65.0 4.21e-01 83.8% 21.3%
4116939 2004.1.1.525 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23, AAA_27, SbcC_Walker_B 0.82 68.0 4.06e-01 89.2% 14.1%
4493879 4992.1.1.23 extended segments › RelB-like › RelB-like › RelB-like › Seryl_tRNA_N 0.82 70.0 6.04e-01 91.9% 65.5%
3297061 632.1.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.80 73.0 6.27e-01 100.0% 65.2%
3471712 604.8.1.0 alpha bundles › Spectrin repeat-like › Smac/diablo › Smac/diablo 0.80 69.0 5.75e-01 93.2% 65.6%
3725506 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.80 68.0 5.93e-01 93.2% 69.1%
3972084 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.79 72.0 5.96e-01 98.6% 60.8%
3468553 328.7.1.0 a+b two layers › IF3-like › Smr domain › Smr domain 0.79 63.0 4.91e-01 85.1% 41.8%
3428029 632.1.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.79 72.0 6.46e-01 98.6% 76.0%
3497418 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.79 62.0 5.55e-01 83.8% 62.0%
3200734 633.21.1.0 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.79 67.0 5.08e-01 91.9% 41.8%
3693258 604.7.1.1 alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA 0.78 67.0 5.87e-01 93.2% 71.8%
3298167 5086.1.1.62 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › XH 0.78 68.0 5.39e-01 93.2% 56.4%
3686172 109.4.1.496 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec5 0.78 65.0 3.76e-01 90.5% 11.5%
3231045 101.1.1.117 alpha arrays › HTH › HTH › Three-helical HTH › CHDCT2 0.78 62.0 5.47e-01 90.5% 60.0%
3355246 192.1.1.0 alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain 0.78 64.0 6.25e-01 89.2% 81.2%
3400466 375.1.9.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase 0.77 64.0 5.24e-01 89.2% 57.7%
3720559 633.12.1.0 alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like 0.77 69.0 5.55e-01 98.6% 79.3%
3326073 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.77 66.0 5.68e-01 97.3% 61.8%
3692987 3755.3.1.481 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › PF30554 0.77 68.0 4.99e-01 97.3% 38.4%
1290191 159.1.3.1 alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › putative NTP pyrophosphohydrolase Exig_1061 › PRA-PH 0.76 59.0 4.69e-01 83.8% 49.3%
3181110 5086.1.1.110 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HisKA 0.76 68.0 6.19e-01 97.3% 86.3%
3295653 4268.2.1.0 alpha duplicates or obligate multimers › EspA/CesA-like › EspA chaperone CesA › EspA chaperone CesA 0.76 67.0 5.73e-01 100.0% 65.8%
3611632 192.7.1.0 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.75 65.0 5.88e-01 94.6% 74.0%
3697800 3559.1.1.0 a+b complex topology › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 0.75 67.0 5.76e-01 98.6% 67.8%
4819006 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.75 61.0 4.08e-01 87.8% 26.0%
3734403 1065.1.1.1 alpha bundles › SPX domain › SPX domain › SPX domain › SPX 0.75 66.0 4.93e-01 98.6% 41.1%
3904047 9.26.1.0 beta barrels › Lipocalins/Streptavidin 0.73 54.0 4.02e-01 78.4% 37.3%
4025445 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.73 66.0 5.92e-01 100.0% 77.0%
4015520 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.72 66.0 5.01e-01 100.0% 99.4%
4297833 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.72 59.0 5.50e-01 93.2% 72.2%
3260684 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.72 51.0 5.58e-01 75.7% 100.0%
4259085 3755.4.1.66 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › MCPsignal 0.72 62.0 4.19e-01 98.6% 87.2%
3914846 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.71 59.0 4.82e-01 93.2% 52.9%
3723174 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.69 58.0 5.81e-01 93.2% 98.7%
3707409 3567.1.1.0 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.69 61.0 5.30e-01 100.0% 65.2%
1879027 244.1.1.6 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › Amino_oxidase 0.67 56.0 3.59e-01 95.9% 19.4%
3504889 604.22.1.1 alpha bundles › Spectrin repeat-like › tubulin binding cofactor C N-terminal domain › tubulin binding cofactor C N-terminal domain › TBCC_N 0.66 51.0 4.95e-01 86.5% 76.5%
3842812 10.12.1.1 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.65 50.0 3.53e-01 83.8% 27.9%
D3 medium residues 129-143_159-253_337-378
PDB
D4 medium residues 144-158_379-431
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3w3sA01 3.30.70.1920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 45.0 3.50e-01 82.4% 83.9%
2vugA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.60 49.0 4.87e-01 92.6% 98.6%
1vkzA02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.59 43.0 4.30e-01 79.4% 97.1%
3jygA00 3.30.479.10 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD 0.59 45.0 3.36e-01 83.8% 92.8%
5yjlD01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 48.0 3.88e-01 98.5% 90.8%
2xqyA03 2.60.40.3190 Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain 0.56 45.0 3.68e-01 91.2% 54.9%
8ediA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 47.0 4.20e-01 100.0% 98.1%
2zplB00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.55 42.0 3.86e-01 97.1% 61.7%
3pihA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.54 43.0 4.31e-01 91.2% 94.4%
2hq7B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 43.0 3.53e-01 97.1% 95.1%
3frmA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 38.0 2.66e-01 77.9% 54.4%
4nlcA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 41.0 2.75e-01 100.0% 22.1%
5e7gA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 45.0 4.22e-01 98.5% 100.0%
5ff5A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 40.0 2.82e-01 85.3% 54.4%
1y8qD03 3.10.290.20 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › Ubiquitin-like 2 activating enzyme e1b. Chain: B, domain 3 0.51 44.0 3.91e-01 100.0% 83.8%
2i6vA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.51 37.0 3.44e-01 94.1% 60.9%
3lohE05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 40.0 3.38e-01 91.2% 97.6%
3r5xD02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.51 34.0 2.72e-01 70.6% 98.1%
3ba3B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 40.0 3.38e-01 97.1% 97.9%
3ib5A00 3.10.570.10 Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain 0.51 38.0 2.53e-01 83.8% 53.8%
1wu7A03 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.51 41.0 3.69e-01 91.2% 72.2%
1lgpA00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.51 33.0 2.80e-01 83.8% 39.8%
3ubgB01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.50 44.0 3.95e-01 100.0% 97.9%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3630206 898.1.1.0 a+b two layers › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 0.69 60.0 4.73e-01 100.0% 93.2%
4963354 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.69 47.0 4.25e-01 72.1% 82.1%
4963839 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.69 47.0 4.41e-01 72.1% 91.8%
4174845 148.1.3.203 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF28760 0.68 55.0 4.12e-01 89.7% 66.9%
3596561 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.68 51.0 5.07e-01 83.8% 77.1%
3959849 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.67 50.0 3.79e-01 79.4% 66.9%
4983703 862.1.1.0 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.66 56.0 3.78e-01 95.6% 84.2%
4977569 3325.1.1.0 a+b two layers › UvrB-binding domain of UvrA › UvrB-binding domain of UvrA › UvrB-binding domain of UvrA 0.63 53.0 4.25e-01 95.6% 85.0%
3686690 304.3.1.1 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA 0.62 46.0 4.37e-01 82.4% 98.8%
3613410 304.11.1.0 a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase 0.57 43.0 4.09e-01 85.3% 100.0%
4016677 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 48.0 4.31e-01 98.5% 98.0%
3964937 230.1.1.3 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › PTPS 0.54 42.0 3.42e-01 86.8% 91.4%
4397259 7.1.1.0 beta barrels › PDZ domain › PDZ domain › PDZ domain 0.54 39.0 3.51e-01 100.0% 53.4%
4403464 386.1.1.77 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › OrsD 0.54 38.0 3.15e-01 76.5% 44.6%
5046788 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.53 40.0 3.35e-01 80.9% 45.8%
5022273 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 31.0 3.19e-01 97.1% 56.9%
3321727 7.1.1.0 beta barrels › PDZ domain › PDZ domain › PDZ domain 0.53 42.0 4.23e-01 100.0% 91.4%
3472771 221.7.1.3 a+b two layers › beta-Grasp › E2-binding domain of E1 › E2-binding domain of E1 › UAE_UbL 0.51 44.0 3.99e-01 100.0% 93.7%
4406240 275.1.1.0 a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase 0.51 39.0 3.70e-01 86.8% 100.0%
3486398 221.7.1.0 a+b two layers › beta-Grasp › E2-binding domain of E1 › E2-binding domain of E1 0.51 44.0 4.05e-01 100.0% 98.9%
3282305 4187.1.1.0 a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like 0.51 37.0 3.72e-01 85.3% 78.6%
3705696 304.114.1.0 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.50 37.0 2.69e-01 82.4% 89.6%