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JQ768459.1__AFH14723.1__Lu11_0186__00192
Bact-VirJQ768459.1__AFH14723.1__Lu11_0186__00192
Identity
- Accession:
- JQ768459 ↗
- Kingdom:
- phage
Quality
96.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 39-95
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2oq1A02 | 1.10.930.10 | Mainly Alpha › Orthogonal Bundle › Syk Kinase; Chain A, domain 2 › Syk Kinase; Chain A, domain 2 | 0.70 | 50.0 | 5.42e-01 | 86.0% | 100.0% |
| 8e9gE01 | 1.10.10.1590 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E | 0.67 | 43.0 | 4.19e-01 | 96.5% | 58.7% |
| 3d5lA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 45.0 | 4.67e-01 | 77.2% | 78.8% |
| 1qrvA00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.64 | 51.0 | 4.79e-01 | 98.2% | 72.6% |
| 2g8lB01 | 1.10.8.380 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 | 0.64 | 47.0 | 4.49e-01 | 78.9% | 77.6% |
| 1wgxA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.64 | 41.0 | 3.83e-01 | 70.2% | 50.7% |
| 4ex8A00 | 3.40.1790.10 | Alpha Beta › 3-Layer(aba) Sandwich › Indigoidine synthase fold › Indigoidine synthase domain | 0.63 | 47.0 | 2.98e-01 | 80.7% | 15.6% |
| 3rv0C02 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.63 | 54.0 | 4.14e-01 | 100.0% | 62.5% |
| 1cf7B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 48.0 | 4.33e-01 | 84.2% | 68.3% |
| 6mh4A03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.63 | 49.0 | 4.44e-01 | 98.2% | 63.3% |
| 4m70B00 | 1.10.246.200 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › WPP domain | 0.61 | 47.0 | 4.10e-01 | 87.7% | 53.8% |
| 4kjmA02 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.61 | 41.0 | 4.19e-01 | 70.2% | 87.3% |
| 4didB01 | 1.20.58.450 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Cell division control protein 42 homolog | 0.60 | 44.0 | 3.55e-01 | 80.7% | 40.4% |
| 6vw7B03 | 1.20.1440.230 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain | 0.59 | 41.0 | 3.63e-01 | 73.7% | 75.0% |
| 6b8hO01 | 1.10.520.20 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase | 0.58 | 43.0 | 3.66e-01 | 82.5% | 49.5% |
| 3akjA02 | 1.10.1070.20 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › | 0.57 | 40.0 | 2.68e-01 | 71.9% | 24.4% |
| 2zy9A03 | 1.10.357.20 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › SLC41 divalent cation transporters, integral membrane domain | 0.56 | 45.0 | 3.32e-01 | 96.5% | 43.1% |
| 1euhA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.55 | 38.0 | 2.52e-01 | 73.7% | 23.0% |
| 2bkkC02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.54 | 37.0 | 2.66e-01 | 70.2% | 97.1% |
| 2nr4A02 | 1.20.58.290 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. | 0.54 | 38.0 | 3.78e-01 | 73.7% | 75.9% |
| 4nooB00 | 1.10.8.1160 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.53 | 40.0 | 3.40e-01 | 80.7% | 75.8% |
| 4gzrC00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.53 | 40.0 | 3.98e-01 | 87.7% | 77.0% |
| 3keyA01 | 1.10.10.1080 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain | 0.52 | 37.0 | 3.36e-01 | 78.9% | 73.6% |
| 4okvE00 | 6.10.140.1890 | Special › Helix non-globular › Helix Hairpins › | 0.52 | 41.0 | 3.92e-01 | 98.2% | 73.8% |
| 3u9rB02 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.51 | 39.0 | 2.62e-01 | 89.5% | 43.7% |
| 3anwA01 | 1.20.58.1030 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.50 | 34.0 | 2.86e-01 | 73.7% | 75.2% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5033577 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.69 | 40.0 | 4.23e-01 | 78.9% | 64.0% |
| 3224304 | 4120.1.1.30 ↗ | few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP › DUF842 | 0.66 | 50.0 | 4.39e-01 | 98.2% | 55.3% |
| 3514133 | 101.1.1.3 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding | 0.65 | 41.0 | 3.97e-01 | 70.2% | 55.4% |
| 3380488 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.65 | 40.0 | 4.57e-01 | 70.2% | 100.0% |
| 3940867 | 632.22.1.67 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › DUF842 | 0.65 | 52.0 | 4.39e-01 | 87.7% | 55.8% |
| 2485 | 101.1.1.3 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding | 0.64 | 41.0 | 3.83e-01 | 70.2% | 50.7% |
| None | — | 0.64 | 53.0 | 3.64e-01 | 96.5% | 39.1% | |
| 4304761 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.63 | 53.0 | 4.26e-01 | 100.0% | 45.8% |
| 3182867 | 2006.1.4.33 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › Tim17 | 0.63 | 53.0 | 4.82e-01 | 96.5% | 71.2% |
| 3611665 | 101.1.1.250 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding_2 | 0.63 | 40.0 | 3.69e-01 | 70.2% | 49.3% |
| 3189848 | 3361.1.1.0 ↗ | alpha bundles › C-terminal Pdr1-activating domain of J-protein Zuo1 › C-terminal Pdr1-activating domain of J-protein Zuo1 › C-terminal Pdr1-activating domain of J-protein Zuo1 | 0.63 | 46.0 | 4.14e-01 | 84.2% | 55.3% |
| 3231368 | 101.1.1.250 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding_2 | 0.62 | 43.0 | 4.00e-01 | 80.7% | 56.0% |
| 5013621 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.60 | 50.0 | 3.37e-01 | 98.2% | 78.3% |
| 2507422 | 632.2.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › GA | 0.60 | 40.0 | 4.13e-01 | 70.2% | 87.3% |
| 3419760 | 150.7.1.3 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PE › PE › CGLD27-like | 0.57 | 45.0 | 4.05e-01 | 94.7% | 62.4% |
| 3716897 | 183.1.1.0 ↗ | alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain | 0.56 | 42.0 | 3.82e-01 | 80.7% | 66.7% |
| 5073312 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.55 | 45.0 | 3.14e-01 | 98.2% | 80.9% |
| 4930612 | 4009.1.1.4 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › DUF3243 | 0.53 | 40.0 | 3.64e-01 | 82.5% | 58.7% |
| 4211751 | 1002.1.1.1 ↗ | alpha complex topology › Fluoride ion channel › Fluoride ion channel › Fluoride ion channel › CRCB | 0.53 | 44.0 | 3.46e-01 | 93.0% | 55.2% |
| 3588971 | 6026.1.1.0 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain | 0.53 | 43.0 | 4.06e-01 | 96.5% | 74.7% |
| 4956322 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.50 | 40.0 | 2.84e-01 | 94.7% | 98.6% |