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JQ768459.1__AFH14772.1__Lu11_0236__00241
Bact-VirJQ768459.1__AFH14772.1__Lu11_0236__00241
Identity
- Accession:
- JQ768459 ↗
- Kingdom:
- phage
Quality
66.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 43-71_147-171
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5dezA03 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.72 | 39.0 | 3.54e-01 | 96.3% | 39.2% |
| 5xpyA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.65 | 57.0 | 4.50e-01 | 96.3% | 61.1% |
| 1ykdB02 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.64 | 46.0 | 3.22e-01 | 79.6% | 69.5% |
| 3k8rA01 | 3.30.2020.40 | Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › Uncharacterised protein PF10387, DUF2442 | 0.63 | 56.0 | 5.19e-01 | 100.0% | 92.6% |
| 4c5wA01 | 3.30.2020.30 | Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › | 0.63 | 57.0 | 4.63e-01 | 100.0% | 84.5% |
| 5nahA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.62 | 50.0 | 3.06e-01 | 92.6% | 83.2% |
| 3nixB00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.61 | 49.0 | 2.96e-01 | 90.7% | 72.8% |
| 3h8lA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.60 | 47.0 | 3.32e-01 | 92.6% | 69.8% |
| 2pm6D01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.59 | 51.0 | 3.27e-01 | 100.0% | 22.1% |
| 1y13A00 | 3.30.479.10 | Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD | 0.59 | 43.0 | 3.21e-01 | 83.3% | 65.6% |
| 1rl1A00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.59 | 50.0 | 4.24e-01 | 96.3% | 59.8% |
| 4ntdA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.59 | 50.0 | 3.42e-01 | 100.0% | 39.9% |
| 1noyA01 | 3.30.342.10 | Alpha Beta › 2-Layer Sandwich › DNA Polymerase; Chain A, domain 1 › DNA Polymerase, chain B, domain 1 | 0.59 | 48.0 | 3.68e-01 | 94.4% | 97.8% |
| 3c96A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.58 | 46.0 | 3.41e-01 | 94.4% | 69.6% |
| 4geqB00 | 3.30.160.430 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.57 | 40.0 | 3.95e-01 | 98.1% | 69.0% |
| 1gutA00 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.56 | 42.0 | 3.98e-01 | 100.0% | 67.2% |
| 5x68A00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.55 | 42.0 | 2.69e-01 | 92.6% | 58.4% |
| 1hyuA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.55 | 48.0 | 3.35e-01 | 100.0% | 37.4% |
| 1t6lA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.55 | 48.0 | 3.12e-01 | 100.0% | 30.5% |
| 4gyiA02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.54 | 39.0 | 3.23e-01 | 92.6% | 42.9% |
| 3a0oA03 | 2.70.98.70 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.54 | 47.0 | 2.97e-01 | 98.1% | 50.9% |
| 2xcmC00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 46.0 | 3.91e-01 | 98.1% | 59.8% |
| 1z47A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 39.0 | 4.06e-01 | 100.0% | 91.8% |
| 1ci3M02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.53 | 44.0 | 4.38e-01 | 98.1% | 89.7% |
| 6z46V01 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.53 | 42.0 | 3.01e-01 | 92.6% | 45.1% |
| 7jj9A02 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.51 | 37.0 | 3.02e-01 | 81.5% | 65.8% |
| 3rheA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.51 | 40.0 | 3.34e-01 | 98.1% | 97.4% |
| 4qmaA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.50 | 39.0 | 3.04e-01 | 94.4% | 86.7% |
| 2a5hA03 | 6.20.120.40 | Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.50 | 39.0 | 3.83e-01 | 90.7% | 90.3% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4948490 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.73 | 49.0 | 4.40e-01 | 70.4% | 54.7% |
| 4952218 | 3933.1.1.1 ↗ | a+b two layers › Uncharacterized protein YPO2434 › Uncharacterized protein YPO2434 › Uncharacterized protein YPO2434 › KTSC | 0.71 | 52.0 | 5.02e-01 | 100.0% | 70.0% |
| 5027344 | 1170.1.1.0 ↗ | beta barrels › IL8-related › IL8-related › IL8 | 0.68 | 46.0 | 4.64e-01 | 70.4% | 83.6% |
| 3580852 | 5.1.4.308 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, LLGL | 0.67 | 60.0 | 3.45e-01 | 100.0% | 58.7% |
| 5041236 | 375.13.1.1 ↗ | few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Toprim_C_rpt | 0.65 | 46.0 | 4.64e-01 | 100.0% | 74.5% |
| 3668711 | 109.4.1.916 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_COPA_B | 0.65 | 43.0 | 2.59e-01 | 92.6% | 10.9% |
| 4245376 | 3933.1.1.1 ↗ | a+b two layers › Uncharacterized protein YPO2434 › Uncharacterized protein YPO2434 › Uncharacterized protein YPO2434 › KTSC | 0.64 | 50.0 | 4.88e-01 | 100.0% | 76.7% |
| 4940641 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.63 | 46.0 | 4.96e-01 | 96.3% | 91.1% |
| 4998305 | 2003.1.3.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain | 0.62 | 50.0 | 3.46e-01 | 92.6% | 53.0% |
| 4144845 | 220.1.1.289 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › HdcB | 0.62 | 45.0 | 3.57e-01 | 100.0% | 38.2% |
| 3930660 | 719.2.1.1 ↗ | beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N | 0.62 | 55.0 | 4.50e-01 | 100.0% | 88.8% |
| 3209860 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.59 | 52.0 | 3.22e-01 | 100.0% | 29.5% |
| 3475647 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.59 | 50.0 | 3.29e-01 | 100.0% | 23.2% |
| 3601907 | 5.1.1.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed | 0.58 | 49.0 | 3.50e-01 | 100.0% | 40.2% |
| 4049072 | 2.4.1.6 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › CysA_C_terminal | 0.58 | 44.0 | 3.49e-01 | 100.0% | 40.9% |
| 4057615 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.58 | 45.0 | 2.92e-01 | 94.4% | 35.8% |
| 3506771 | 5.1.5.75 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, ANAPC4_WD40 | 0.58 | 47.0 | 2.88e-01 | 88.9% | 83.3% |
| 3995515 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.57 | 48.0 | 3.03e-01 | 98.1% | 39.3% |
| 5082568 | 2003.1.3.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Pyr_redox_2 | 0.57 | 44.0 | 3.22e-01 | 92.6% | 57.1% |
| 3801954 | 5.1.3.118 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 | 0.57 | 41.0 | 2.59e-01 | 83.3% | 13.4% |
| 1924008 | 227.1.1.10 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Herpes_PAP | 0.57 | 50.0 | 3.81e-01 | 100.0% | 59.4% |
| 4659931 | 2003.1.2.99 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, FAD_binding_3 | 0.56 | 49.0 | 3.02e-01 | 100.0% | 18.2% |
| 4329229 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.55 | 48.0 | 3.32e-01 | 100.0% | 37.9% |
| 5041229 | 375.13.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain | 0.55 | 39.0 | 3.83e-01 | 100.0% | 71.7% |
| 4359927 | 2003.1.2.99 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, FAD_binding_3 | 0.55 | 48.0 | 3.29e-01 | 100.0% | 38.5% |
| 4408024 | 325.1.7.3 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C | 0.55 | 46.0 | 4.47e-01 | 98.1% | 85.0% |
| 3165403 | 4958.1.1.0 ↗ | a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit | 0.54 | 46.0 | 4.33e-01 | 98.1% | 78.5% |
| 4159666 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.54 | 46.0 | 3.64e-01 | 98.1% | 46.8% |
| 4103288 | 207.6.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C › HemolysinCabind | 0.54 | 44.0 | 3.10e-01 | 90.7% | 28.8% |
| 3231308 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.54 | 47.0 | 3.08e-01 | 96.3% | 28.9% |
| 4107506 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.54 | 45.0 | 4.29e-01 | 98.1% | 78.5% |
| 4127839 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.54 | 45.0 | 4.07e-01 | 98.1% | 68.0% |
| 4398996 | 207.6.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C › HemolysinCabind | 0.53 | 44.0 | 3.25e-01 | 92.6% | 36.4% |
| 3738814 | 2003.6.1.5 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Phos_pyr_kin | 0.52 | 42.0 | 2.69e-01 | 94.4% | 43.4% |
| 4068978 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.52 | 44.0 | 4.01e-01 | 98.1% | 69.3% |
| 5039702 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 34.0 | 3.63e-01 | 100.0% | 84.4% |
| 3994170 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.52 | 42.0 | 3.01e-01 | 100.0% | 29.6% |
| 3248902 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.51 | 44.0 | 3.91e-01 | 100.0% | 91.3% |
| 3729167 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.50 | 44.0 | 3.61e-01 | 100.0% | 90.0% |