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JQ768459.1__AFH14791.1__Lu11_0255__00260

Bact-Vir

JQ768459.1__AFH14791.1__Lu11_0255__00260

Identity

Accession:
JQ768459 ↗
Kingdom:
phage

Quality

97.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pseudomonas_phage_Lu11

TaxID: 1161927

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-146
PDB
Domain cluster: rep: SR-VP_2-4_scaffold_141_2952615_prodigal-single.1__X__X__00274__D10-149
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3cjsA00 3.30.70.1170 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sun protein; domain 3 0.64 26.0 3.70e-01 70.3% 84.5%
2dt9A01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.64 27.0 3.60e-01 78.6% 73.0%
1r44A00 3.30.1380.10 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › 0.63 56.0 5.01e-01 96.6% 92.6%
5vyeA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.61 32.0 3.73e-01 79.3% 70.6%
1wqsA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 28.0 3.80e-01 91.7% 87.1%
2cpdA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.60 29.0 3.85e-01 70.3% 86.7%
1v72A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.60 31.0 3.68e-01 77.9% 70.3%
5hnmC00 3.30.1380.10 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › 0.60 53.0 4.93e-01 95.2% 85.4%
2vo9A01 3.30.1380.10 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › 0.59 49.0 5.17e-01 91.7% 97.0%
4mphA00 3.30.1380.10 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › 0.58 53.0 4.91e-01 100.0% 81.8%
1svvB02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.57 33.0 4.07e-01 81.4% 89.1%
1ywqA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.57 43.0 3.96e-01 80.0% 81.4%
5cemA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 27.0 3.59e-01 91.0% 84.9%
4muqA02 3.30.1380.10 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › 0.57 50.0 5.03e-01 93.8% 93.8%
3rq1D01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.57 29.0 2.87e-01 77.2% 43.1%
2l01A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 20.0 2.63e-01 73.8% 54.5%
4w8iA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.55 32.0 3.51e-01 78.6% 67.8%
3va7A05 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.55 30.0 3.62e-01 92.4% 79.0%
4a6dA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 25.0 3.08e-01 85.5% 68.1%
2phcB01 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.53 26.0 3.25e-01 80.7% 77.1%
1v2yA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 27.0 3.11e-01 95.2% 66.7%
3r4cA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.51 35.0 4.12e-01 77.2% 100.0%
2pq0A02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.51 35.0 4.08e-01 77.9% 100.0%
3pgvA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.51 35.0 4.10e-01 77.9% 100.0%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5081052 307.1.1.5 ↗ a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Peptidase_M15_3 0.77 72.0 7.25e-01 97.9% 99.3%
5009565 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.75 37.0 3.97e-01 95.9% 53.8%
4507561 3012.1.1.9 ↗ a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › SecD_1st 0.70 37.0 3.67e-01 78.6% 48.4%
4367492 3016.1.1.19 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › KYNU_C 0.67 30.0 4.18e-01 93.8% 85.7%
3742222 3016.1.1.10 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › GDC-P 0.63 33.0 3.90e-01 77.9% 72.4%
4108740 3016.1.1.10 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › GDC-P 0.63 33.0 3.79e-01 78.6% 67.6%
3978719 307.1.1.2 ↗ a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Peptidase_M15 0.63 57.0 5.06e-01 96.6% 90.5%
3781863 601.23.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_III 0.63 35.0 2.67e-01 79.3% 23.0%
4010530 307.1.1.2 ↗ a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Peptidase_M15 0.61 55.0 5.23e-01 98.6% 94.1%
1016844 306.2.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › arginine repressor C terminal domain-related › C-terminal domain of arginine repressor › Arg_repressor_C 0.59 26.0 3.31e-01 80.7% 68.8%
1297179 307.1.1.3 ↗ a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › VanY 0.59 54.0 4.72e-01 100.0% 73.7%
5036936 3016.1.1.2 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 0.59 33.0 4.08e-01 80.0% 88.9%
3631465 3016.1.1.2 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 0.59 28.0 3.72e-01 95.9% 86.3%
4129052 3016.1.1.2 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 0.59 34.0 4.01e-01 80.7% 85.3%
5073545 3016.1.1.2 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 0.58 33.0 4.05e-01 80.7% 88.9%
3789263 601.23.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_III 0.58 39.0 3.08e-01 81.4% 33.0%
4967239 3016.1.1.2 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 0.58 33.0 4.08e-01 80.7% 94.0%
None — 0.58 51.0 5.09e-01 94.5% 95.9%
1103093 307.1.1.3 ↗ a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › VanY 0.57 52.0 4.86e-01 100.0% 80.4%
3589629 307.1.1.3 ↗ a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › VanY 0.57 51.0 4.57e-01 95.9% 81.9%
2448156 307.1.1.6 ↗ a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Peptidase_M15_4 0.57 51.0 5.04e-01 94.5% 92.1%
4174479 5104.1.1.0 ↗ a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.56 31.0 3.41e-01 93.1% 66.1%
4659276 2006.1.1.11 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase_3 0.56 38.0 3.28e-01 90.3% 44.0%
5083122 3016.1.1.2 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 0.56 30.0 3.67e-01 77.9% 83.0%
4976232 3016.1.1.2 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 0.55 31.0 3.74e-01 78.6% 85.6%
4986620 2006.1.1.11 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase_3 0.55 37.0 3.22e-01 86.9% 45.1%
119083 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.55 31.0 3.79e-01 81.4% 87.1%
3245243 3016.1.1.19 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › KYNU_C 0.54 35.0 3.93e-01 80.7% 85.5%
4079590 306.6.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like › CT_C_D 0.53 30.0 3.53e-01 92.4% 79.0%
2076039 3012.1.1.0 ↗ a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.51 35.0 4.08e-01 77.9% 100.0%
3226757 864.1.1.1 ↗ a+b two layers › DLC › DLC › DLC › Dynein_light 0.51 24.0 3.02e-01 87.6% 72.9%
3506323 12.1.1.98 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Helicase_C_3 0.51 28.0 3.08e-01 93.8% 65.2%