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JQ768459.1__AFH14826.1__Lu11_0288__00295

Bact-Vir

JQ768459.1__AFH14826.1__Lu11_0288__00295

Identity

Accession:
JQ768459 ↗
Kingdom:
phage

Quality

94.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pseudomonas_phage_Lu11

TaxID: 1161927

Cluster

View cluster (10 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 9-22_92-175
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8bauA01 1.10.357.40 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › YbiA-like 0.90 68.0 5.35e-01 77.6% 97.8%
2b3wA00 1.10.357.40 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › YbiA-like 0.86 68.0 5.52e-01 81.6% 88.1%
5xbfA02 1.20.80.10 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.56 41.0 4.17e-01 80.6% 76.8%
7br2D01 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.54 40.0 3.14e-01 79.6% 76.5%
2hpvA00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.53 39.0 3.13e-01 78.6% 58.9%
1vsgA02 1.10.470.10 Mainly Alpha › Orthogonal Bundle › Variant Surface Glycoprotein, subunit A; domain 2 › Variant Surface Glycoprotein, subunit A, domain 2 0.53 41.0 3.56e-01 85.7% 83.0%
2f2hA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.51 38.0 2.59e-01 78.6% 29.9%
3nrgA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.50 44.0 3.48e-01 100.0% 90.3%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3432841 4308.1.1.1 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.92 71.0 5.86e-01 79.6% 100.0%
3600506 4308.1.1.0 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like 0.92 71.0 5.99e-01 79.6% 98.7%
3212620 4308.1.1.1 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.89 71.0 5.43e-01 81.6% 96.9%
3800544 4308.1.1.0 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like 0.89 71.0 5.33e-01 81.6% 93.2%
3789927 4308.1.1.1 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.88 72.0 5.69e-01 84.7% 95.0%
3941374 4308.1.1.0 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like 0.87 71.0 4.84e-01 84.7% 64.9%
3514172 4308.1.1.1 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.86 65.0 5.30e-01 77.6% 94.5%
3998019 4308.1.1.1 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.86 70.0 5.55e-01 84.7% 89.4%
3514154 4308.1.1.0 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like 0.86 66.0 5.37e-01 79.6% 100.0%
3797441 4308.1.1.0 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like 0.77 63.0 5.25e-01 84.7% 92.2%
3616731 4308.1.1.1 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.77 63.0 5.19e-01 84.7% 89.2%
3218293 4308.1.1.1 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.76 62.0 4.64e-01 84.7% 69.5%
3708691 650.1.1.0 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.56 44.0 4.26e-01 83.7% 91.8%
3593240 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 40.0 3.19e-01 77.6% 60.0%
5030482 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 35.0 2.89e-01 79.6% 35.1%
3822156 101.1.10.32 ↗ alpha arrays › HTH › HTH › Cyclin-like › Rrn7_cyclin_N 0.52 41.0 3.38e-01 89.8% 90.0%
3217641 7516.1.1.52 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotid_trans 0.50 44.0 3.13e-01 98.0% 89.4%
D2 medium residues 23-91
PDB
Domain cluster: rep: PH2015_22_scaffold_1_prodigal-single.1__X__X__00105__D12-68
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2b3wA00 1.10.357.40 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › YbiA-like 0.87 77.0 5.66e-01 100.0% 39.3%
8bauA01 1.10.357.40 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › YbiA-like 0.85 79.0 5.65e-01 100.0% 39.8%
4kjmA02 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.69 52.0 5.82e-01 81.2% 100.0%
1xvhB00 1.20.120.1850 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Ebh helix bundles repeating unit (S and A modules) 0.66 53.0 4.36e-01 85.5% 79.7%
4heoA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.64 46.0 5.00e-01 81.2% 94.5%
3dbyL00 1.20.1260.120 Mainly Alpha › Up-down Bundle › Ferritin › Protein of unknown function DUF2935 0.56 48.0 3.27e-01 97.1% 87.3%
1z6mA02 1.10.1200.90 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › DsbA-like domain 0.54 42.0 4.46e-01 89.9% 100.0%
7ob9B01 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.52 38.0 2.86e-01 81.2% 56.8%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3281506 4308.1.1.1 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.95 84.0 6.27e-01 100.0% 42.7%
3432841 4308.1.1.1 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.91 86.0 6.32e-01 100.0% 50.6%
3264987 4308.1.1.1 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.90 81.0 6.17e-01 100.0% 45.5%
3230388 4308.1.1.1 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.87 82.0 5.73e-01 100.0% 40.5%
7671 4308.1.1.1 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.87 77.0 5.75e-01 100.0% 41.2%
3972372 4308.1.1.0 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like 0.87 82.0 5.83e-01 100.0% 38.5%
3279758 4308.1.1.1 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.87 81.0 6.13e-01 100.0% 46.3%
3616731 4308.1.1.1 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.86 80.0 5.95e-01 100.0% 44.3%
3705063 4308.1.1.1 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.86 79.0 6.03e-01 100.0% 46.9%
3797441 4308.1.1.0 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like 0.86 80.0 5.99e-01 100.0% 45.8%
4835580 4308.1.1.1 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.85 79.0 5.96e-01 100.0% 47.7%
3789927 4308.1.1.1 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.85 78.0 5.63e-01 100.0% 43.3%
3998019 4308.1.1.1 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.84 77.0 5.56e-01 100.0% 38.9%
3600506 4308.1.1.0 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like 0.83 76.0 5.77e-01 100.0% 45.3%
3797531 632.2.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.83 76.0 6.93e-01 100.0% 78.9%
3185713 4308.1.1.1 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.82 74.0 6.06e-01 100.0% 55.8%
3212620 4308.1.1.1 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.81 75.0 5.29e-01 100.0% 39.0%
3518206 4308.1.1.0 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like 0.79 71.0 5.47e-01 100.0% 52.0%
3620605 4308.1.1.1 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.77 70.0 5.15e-01 100.0% 43.7%
3514172 4308.1.1.1 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.77 69.0 5.21e-01 100.0% 46.7%
3999783 4308.1.1.0 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like 0.76 67.0 4.78e-01 100.0% 36.2%
3616804 4308.1.1.1 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.75 66.0 4.84e-01 100.0% 40.0%
3923757 4308.1.1.1 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.74 66.0 4.95e-01 100.0% 44.7%
3999784 4308.1.1.0 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like 0.74 67.0 4.83e-01 100.0% 41.6%
3930688 4308.1.1.1 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.74 65.0 4.73e-01 100.0% 41.5%
3999501 4308.1.1.1 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.74 67.0 5.03e-01 100.0% 49.7%
4028386 4308.1.1.0 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like 0.72 65.0 4.78e-01 100.0% 51.4%
4927753 632.2.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.72 50.0 5.13e-01 72.5% 96.9%
1155488 632.2.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › GA 0.68 52.0 5.54e-01 82.6% 90.3%
1503071 632.2.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › GA 0.68 51.0 5.64e-01 84.1% 98.2%
3245315 2485.1.1.67 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › GILT 0.63 49.0 3.72e-01 85.5% 68.0%
5069402 632.23.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Helical linker domain in nicking endonuclease N.BspD6I › Helical linker domain in nicking endonuclease N.BspD6I 0.63 45.0 4.56e-01 82.6% 75.7%
4968057 632.2.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.61 45.0 4.45e-01 85.5% 73.3%
3794726 632.2.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.59 46.0 4.22e-01 84.1% 88.9%
4001307 632.2.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.58 43.0 4.13e-01 87.0% 70.0%
3507982 632.2.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.57 43.0 3.86e-01 84.1% 90.5%
3237733 632.2.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.55 46.0 4.39e-01 92.8% 80.0%
3765555 632.2.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.55 45.0 3.92e-01 92.8% 92.7%
3950558 2002.1.1.56 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Dus 0.54 44.0 2.79e-01 91.3% 16.8%
4258420 601.25.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › TrmE connector domain › TrmE connector domain › MnmE_helical 0.53 42.0 3.22e-01 85.5% 56.9%
3799651 632.2.1.28 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › Moulting_cycle 0.53 44.0 3.46e-01 95.7% 61.3%
3236318 632.2.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.52 43.0 4.06e-01 92.8% 75.3%
3838934 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.52 40.0 2.91e-01 81.2% 57.9%
4229946 2002.1.1.56 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Dus 0.52 42.0 2.73e-01 95.7% 17.4%
3917472 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.50 35.0 2.32e-01 78.3% 76.6%