←Back to structures
JQ768459.1__AFH14830.1__Lu11_0292__00299
Bact-VirJQ768459.1__AFH14830.1__Lu11_0292__00299
Identity
- Accession:
- JQ768459 ↗
- Kingdom:
- phage
Quality
82.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 91-273
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3e57A00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.89 | 58.0 | 5.93e-01 | 98.4% | 67.2% |
| 1v8wA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.78 | 53.0 | 5.73e-01 | 98.9% | 80.5% |
| 1viuC00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.76 | 53.0 | 5.43e-01 | 100.0% | 73.6% |
| 4mpoB00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.75 | 53.0 | 5.88e-01 | 100.0% | 89.2% |
| 2o1cA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.75 | 53.0 | 5.87e-01 | 99.5% | 89.8% |
| 4j7hA02 | 3.90.79.40 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › EvaA sugar 2,3-dehydratase subunit | 0.68 | 48.0 | 5.07e-01 | 100.0% | 79.4% |
| 1k2eA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.68 | 48.0 | 5.26e-01 | 100.0% | 86.8% |
| 1wjuA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.55 | 24.0 | 3.13e-01 | 73.8% | 72.0% |
| 3d30A02 | 2.60.40.760 | Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain | 0.51 | 24.0 | 3.18e-01 | 92.3% | 83.0% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 169086 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.89 | 58.0 | 5.93e-01 | 98.4% | 67.2% |
| 4441844 | 221.4.1.0 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix | 0.86 | 64.0 | 6.19e-01 | 96.2% | 69.0% |
| 4937691 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.82 | 48.0 | 5.60e-01 | 96.7% | 79.3% |
| 5030304 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.79 | 57.0 | 5.98e-01 | 99.5% | 79.4% |
| None | — | 0.79 | 52.0 | 5.70e-01 | 100.0% | 79.9% | |
| 3390675 | 221.4.1.24 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX, DUF4743 | 0.78 | 59.0 | 4.90e-01 | 99.5% | 47.8% |
| 4156752 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.77 | 55.0 | 5.65e-01 | 95.1% | 75.4% |
| 3669809 | 221.4.1.0 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix | 0.76 | 44.0 | 5.25e-01 | 79.2% | 83.2% |
| 3510256 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.76 | 64.0 | 5.99e-01 | 100.0% | 74.4% |
| 418817 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.75 | 54.0 | 5.42e-01 | 100.0% | 72.2% |
| 3286004 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.74 | 51.0 | 5.64e-01 | 97.8% | 85.3% |
| 3387989 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.70 | 55.0 | 5.46e-01 | 100.0% | 77.2% |
| 3714918 | 3529.1.1.1 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault | 0.63 | 20.0 | 3.66e-01 | 83.6% | 94.5% |
| 4124823 | 4186.1.1.1 ↗ | beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p | 0.52 | 27.0 | 3.46e-01 | 74.3% | 85.7% |
| 4085638 | 4186.1.1.1 ↗ | beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p | 0.52 | 27.0 | 3.44e-01 | 74.3% | 86.5% |
D2
medium
residues 15-90
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3e57A00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.91 | 69.0 | 5.03e-01 | 98.7% | 33.3% |
| 5ujeA01 | 3.30.1760.10 | Alpha Beta › 2-Layer Sandwich › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, domain 2 › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, domain 2 | 0.54 | 45.0 | 4.05e-01 | 96.1% | 83.8% |
| 4c1uA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.51 | 41.0 | 3.14e-01 | 96.1% | 77.3% |