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JQ768459.1__AFH14850.1__Lu11_0312__00319

Bact-Vir

JQ768459.1__AFH14850.1__Lu11_0312__00319

Identity

Accession:
JQ768459 ↗
Kingdom:
phage

Quality

65.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pseudomonas_phage_Lu11

TaxID: 1161927

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 68-156
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1skoB00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.60 36.0 3.32e-01 73.0% 44.8%
2w00A01 3.90.1570.50 Alpha Beta › Alpha-Beta Complex › tt1808, chain A › 0.59 47.0 3.86e-01 87.6% 87.7%
6j9eJ00 3.30.160.560 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 37.0 4.11e-01 70.8% 87.9%
3devA02 3.10.310.30 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.57 42.0 3.87e-01 78.7% 96.6%
3eeiA00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.56 40.0 3.00e-01 75.3% 97.0%
3cjmA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.55 42.0 3.04e-01 82.0% 28.2%
4ifaA01 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.55 47.0 3.38e-01 96.6% 63.1%
3s1sA01 3.90.1570.30 Alpha Beta › Alpha-Beta Complex › tt1808, chain A › 0.55 43.0 3.53e-01 85.4% 94.7%
2r5vB02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.54 40.0 3.22e-01 80.9% 83.6%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.54 39.0 3.39e-01 86.5% 48.6%
2pi2D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 37.0 3.37e-01 71.9% 95.9%
1vloA01 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.53 41.0 3.55e-01 82.0% 89.3%
1ekgA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.53 41.0 3.82e-01 86.5% 89.1%
1cjxB02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 40.0 3.22e-01 86.5% 83.2%
2jh3A03 3.30.1360.190 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.52 36.0 3.41e-01 73.0% 83.9%
6mv2A01 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 36.0 3.48e-01 74.2% 100.0%
2hc5A01 3.30.160.170 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like 0.51 38.0 3.70e-01 82.0% 73.5%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3945393 7089.1.1.2 ↗ a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › DUF5405 0.69 47.0 4.90e-01 76.4% 76.2%
4964955 223.2.1.63 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › DUF7522 0.67 42.0 3.68e-01 75.3% 43.4%
5074857 223.2.1.59 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Roc 0.65 45.0 3.11e-01 82.0% 20.6%
3880867 2484.1.1.145 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1_7 0.63 55.0 3.58e-01 95.5% 70.2%
3658352 223.2.1.15 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Longin 0.63 39.0 3.43e-01 76.4% 40.7%
3808328 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 39.0 3.56e-01 74.2% 44.8%
3827261 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 40.0 3.52e-01 70.8% 43.8%
3834262 223.2.1.15 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Longin 0.62 40.0 3.46e-01 75.3% 40.7%
3341742 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 37.0 3.14e-01 74.2% 34.8%
3647236 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 46.0 3.46e-01 96.6% 34.1%
5083496 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 38.0 3.46e-01 76.4% 44.8%
5049690 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 39.0 3.38e-01 78.7% 43.6%
4944411 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 37.0 3.31e-01 74.2% 42.2%
3255285 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.58 38.0 3.44e-01 77.5% 47.2%
5037096 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.58 41.0 3.13e-01 74.2% 43.6%
5072591 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 38.0 3.50e-01 76.4% 51.3%
3588251 6043.1.1.3 ↗ a+b two layers › yfeY-like › yfeY-like › yfeY-like › CAP_assoc_N 0.57 37.0 3.75e-01 74.2% 65.6%
3223489 223.2.1.7 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › SRP-alpha_N 0.57 37.0 3.25e-01 71.9% 44.6%
3561766 2484.1.1.145 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1_7 0.57 47.0 3.19e-01 92.1% 74.7%
5074649 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 34.0 3.06e-01 73.0% 41.6%
3403732 2484.1.1.145 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1_7 0.56 43.0 2.86e-01 80.9% 73.2%
3914514 2484.1.1.145 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1_7 0.55 43.0 2.84e-01 80.9% 69.7%
5054267 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 39.0 2.85e-01 74.2% 43.3%
5048715 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 37.0 3.23e-01 82.0% 42.8%
5050074 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.55 35.0 3.15e-01 75.3% 43.0%
5063657 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.54 33.0 3.11e-01 74.2% 45.4%
3940145 2484.1.1.145 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1_7 0.54 43.0 2.75e-01 83.1% 62.0%
3783719 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 35.0 3.17e-01 79.8% 48.3%
5079402 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 39.0 3.50e-01 82.0% 52.3%
3584786 7.1.1.1 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ 0.53 36.0 3.54e-01 70.8% 64.0%
3786078 109.4.1.1764 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28917 0.53 41.0 2.55e-01 82.0% 41.0%
3924796 223.2.1.12 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › MAPKK1_Int 0.52 33.0 3.06e-01 74.2% 47.8%
3907054 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.51 34.0 3.37e-01 70.8% 100.0%
4969778 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.51 40.0 2.88e-01 86.5% 52.2%
3465957 5.1.4.504 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › b-prop_At3g26010-like 0.50 37.0 2.49e-01 80.9% 33.9%
D2 medium residues 1-67
PDB