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JQ768459.1__AFH14870.1__Lu11_0332__00339

Bact-Vir

JQ768459.1__AFH14870.1__Lu11_0332__00339

Identity

Accession:
JQ768459 ↗
Kingdom:
phage

Quality

76.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pseudomonas_phage_Lu11

TaxID: 1161927

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-93
PDB
Domain cluster: rep: ALT_09252017_20_scaffold_10_prodigal-single.1__X__X__00010__D6-79
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2v5yA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.70 45.0 4.33e-01 81.5% 57.8%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.69 48.0 5.24e-01 100.0% 88.2%
7y8sB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.69 42.0 4.34e-01 81.5% 64.4%
2hj1A00 3.10.20.280 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like 0.63 38.0 4.09e-01 82.6% 71.4%
2pjyC00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.62 39.0 4.14e-01 91.3% 73.4%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.61 41.0 3.95e-01 72.8% 58.7%
1o22A00 3.90.1000.10 Alpha Beta › Alpha-Beta Complex › Orphan Protein Tm0875; Chain: A; › Hypothetical protein TM0875 0.61 42.0 3.54e-01 70.7% 100.0%
2ecuA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 43.0 3.66e-01 95.7% 47.7%
3q8pB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.57 40.0 3.84e-01 72.8% 62.0%
4nx9A02 2.60.40.4390 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 43.0 3.93e-01 80.4% 71.1%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.56 43.0 4.39e-01 83.7% 92.4%
6kwzA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.56 38.0 3.78e-01 94.6% 66.3%
5chtB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.56 42.0 2.97e-01 80.4% 94.0%
1ca1A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.55 44.0 4.06e-01 88.0% 79.2%
3hvnA01 3.90.840.10 Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain 0.55 42.0 3.51e-01 83.7% 62.8%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.54 43.0 3.56e-01 85.9% 71.9%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.54 41.0 4.14e-01 83.7% 90.4%
2w5eA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 36.0 3.94e-01 81.5% 86.5%
2c60A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 39.0 4.16e-01 90.2% 91.1%
1wlfA01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.53 31.0 3.24e-01 89.1% 61.9%
3bexA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 43.0 3.86e-01 91.3% 83.1%
1cttA02 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.53 42.0 3.99e-01 89.1% 73.9%
3u5wA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 40.0 3.71e-01 84.8% 84.9%
1w99A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 39.0 3.10e-01 79.3% 40.8%
2mqjA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 36.0 3.84e-01 87.0% 85.7%
2riqA02 2.20.25.630 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.52 26.0 3.01e-01 100.0% 66.7%
4h3wA02 2.60.120.1260 Mainly Beta › Sandwich › Jelly Rolls › 0.51 38.0 3.28e-01 79.3% 49.3%
4ybnB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 39.0 3.13e-01 84.8% 65.9%
2hq9B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 39.0 3.53e-01 85.9% 89.1%
3ihlB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 39.0 3.01e-01 84.8% 72.9%
2htiA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 40.0 3.62e-01 85.9% 88.9%
5cecA02 3.50.80.20 Alpha Beta › 3-Layer(bba) Sandwich › D-tyrosyl-trna(Tyr) Deacylase; Chain: A; › D-Ala-D-Ala carboxypeptidase C, peptidase S13 0.50 43.0 3.66e-01 98.9% 98.8%
2a2jA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 39.0 3.11e-01 85.9% 70.4%
6l4lA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.50 43.0 4.07e-01 98.9% 96.6%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4969863 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.73 52.0 5.63e-01 100.0% 90.7%
4013514 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.72 51.0 4.92e-01 100.0% 64.8%
5067865 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.72 49.0 5.49e-01 100.0% 92.9%
5081134 3986.2.1.0 ↗ a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.71 40.0 4.78e-01 83.7% 85.0%
2831852 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.70 50.0 4.87e-01 100.0% 67.3%
5080205 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.70 39.0 4.95e-01 70.7% 98.0%
3593981 302.1.1.0 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain 0.66 42.0 4.06e-01 72.8% 57.1%
3739303 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.63 42.0 3.88e-01 73.9% 52.5%
3933380 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.63 42.0 3.92e-01 76.1% 54.8%
3326759 284.1.3.1 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 0.61 40.0 4.37e-01 76.1% 82.7%
3259141 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.61 38.0 4.45e-01 84.8% 95.0%
3217134 5001.1.1.153 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srd, 7TM_GPCR_Str 0.61 45.0 3.04e-01 77.2% 81.2%
3167354 284.1.3.1 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 0.61 40.0 4.42e-01 76.1% 86.3%
4031235 3986.2.1.2 ↗ a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd › DUF2922 0.60 42.0 4.70e-01 80.4% 98.6%
3514788 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.59 50.0 3.84e-01 94.6% 68.8%
5010744 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.58 39.0 4.49e-01 82.6% 96.9%
4942818 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.58 47.0 4.06e-01 87.0% 72.1%
3925690 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.57 40.0 4.37e-01 73.9% 93.3%
5029082 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.57 51.0 4.17e-01 100.0% 75.9%
4980573 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.57 44.0 3.48e-01 83.7% 55.3%
5055458 2484.1.1.8 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.56 47.0 4.22e-01 92.4% 88.5%
3210904 12.6.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related 0.56 51.0 4.48e-01 100.0% 97.8%
3592225 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.56 41.0 4.26e-01 88.0% 83.5%
4027095 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.56 43.0 4.46e-01 88.0% 89.4%
3766617 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 39.0 4.13e-01 88.0% 86.3%
3784239 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 44.0 3.99e-01 89.1% 81.5%
3263365 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.53 39.0 4.15e-01 87.0% 90.0%
3601157 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.52 47.0 4.42e-01 98.9% 99.1%
4001707 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.52 37.0 3.80e-01 75.0% 81.2%
4098000 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.51 45.0 4.15e-01 97.8% 84.2%
3177939 221.1.1.51 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › USP7_C2 0.50 39.0 4.05e-01 88.0% 91.8%
D2 medium residues 126-199
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3zfnA02 2.30.140.40 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Pestivirus Npro endopeptidase C53, interaction domain 0.72 44.0 5.00e-01 79.7% 80.7%
2ej9A02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.68 40.0 4.69e-01 100.0% 87.8%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 44.0 4.68e-01 100.0% 88.7%
1jb0E00 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.60 46.0 4.80e-01 100.0% 91.3%
3upuA03 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.59 52.0 4.33e-01 100.0% 94.7%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 43.0 4.37e-01 100.0% 81.9%
3fhwA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 40.0 3.73e-01 78.4% 92.9%
1gd5A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.56 39.0 3.24e-01 73.0% 72.3%
3lq6A02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.54 37.0 3.28e-01 73.0% 94.7%
1w4sA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.53 45.0 3.69e-01 100.0% 49.3%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 38.0 4.03e-01 100.0% 93.9%
1jsgA00 2.40.15.10 Mainly Beta › Beta Barrel › Proto-oncogene - Oncogene Product P14tcl1 › TCL1/MTCP1 0.50 36.0 3.20e-01 77.0% 93.7%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3873942 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 57.0 6.04e-01 100.0% 83.1%
3918340 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.79 56.0 5.73e-01 100.0% 77.1%
3510029 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.70 50.0 5.47e-01 98.6% 91.7%
3530890 2004.1.1.402 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CABIT 0.68 60.0 5.70e-01 100.0% 81.8%
3907178 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 60.0 5.31e-01 100.0% 75.2%
5020252 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.63 39.0 3.39e-01 100.0% 38.3%
3496292 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.63 43.0 4.72e-01 91.9% 96.4%
3585565 220.1.1.159 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_met_RdRP 0.62 52.0 4.11e-01 95.9% 84.4%
3473111 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.61 52.0 3.16e-01 94.6% 20.5%
3490930 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.61 51.0 4.02e-01 94.6% 73.8%
4255495 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.56 45.0 3.16e-01 89.2% 54.4%
3688630 7579.1.1.6 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.54 37.0 2.36e-01 71.6% 23.7%
3792503 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 44.0 3.34e-01 94.6% 81.5%
3289416 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 38.0 3.73e-01 78.4% 77.6%
3490017 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.53 36.0 3.19e-01 70.3% 92.2%
135648 4.1.1.142 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq_1 0.53 39.0 4.07e-01 98.6% 89.2%
4349149 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 46.0 4.39e-01 100.0% 81.1%
5077869 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.53 47.0 3.87e-01 100.0% 91.1%
4235293 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 44.0 3.91e-01 100.0% 75.7%
3555863 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.52 35.0 3.03e-01 70.3% 80.8%
3219409 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 44.0 4.23e-01 100.0% 82.2%
4960051 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.51 43.0 3.32e-01 94.6% 48.3%
3699382 5.1.2.33 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › BNR_3 0.51 38.0 2.80e-01 82.4% 27.9%
4479020 243.3.1.5 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › FTP 0.51 39.0 3.72e-01 81.1% 78.8%
3550168 4.8.1.27 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › CUL7_CUL9_N 0.51 44.0 4.17e-01 100.0% 81.1%
5075253 2003.1.1.39 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Sacchrp_dh_NADP 0.51 40.0 2.63e-01 91.9% 44.4%
3513844 708.1.2.11 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › STEEP1 0.50 43.0 3.91e-01 95.9% 72.0%
4444078 243.3.1.5 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › FTP 0.50 40.0 3.49e-01 93.2% 56.5%
D3 medium residues 200-277
PDB
Domain cluster: representative
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 51.0 5.40e-01 89.7% 88.4%
7a0hA01 3.30.1140.60 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › F-actin capping protein, alpha subunit 0.65 44.0 4.06e-01 92.3% 54.5%
2l0cA00 2.40.50.660 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 44.0 4.06e-01 71.8% 90.7%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 48.0 4.35e-01 89.7% 61.1%
4gl6A01 3.10.450.570 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Domain of unknown function (DUF5037), N-terminal subdomain 0.61 47.0 4.67e-01 83.3% 79.3%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.60 45.0 4.63e-01 92.3% 85.3%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 41.0 4.01e-01 71.8% 69.8%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 40.0 3.66e-01 71.8% 59.6%
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.57 39.0 3.90e-01 80.8% 67.9%
2hc5A01 3.30.160.170 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like 0.57 43.0 4.10e-01 98.7% 67.3%
2kr0A01 2.30.29.70 Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 0.57 45.0 4.00e-01 87.2% 91.2%
5i97C00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.56 45.0 3.79e-01 88.5% 94.2%
5tf2A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 47.0 3.14e-01 94.9% 95.0%
4ld6A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 46.0 4.08e-01 94.9% 60.7%
4l9cA00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.56 46.0 3.81e-01 94.9% 79.3%
1tj6A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 48.0 4.25e-01 98.7% 93.0%
3ebtA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 45.0 3.88e-01 92.3% 90.1%
3g8zA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 45.0 3.88e-01 92.3% 88.3%
3vgzC00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 44.0 2.91e-01 88.5% 39.0%
3pggA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 44.0 4.50e-01 92.3% 93.6%
3kkgA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 42.0 3.55e-01 88.5% 84.0%
1yudA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 39.0 3.20e-01 78.2% 80.0%
2kigA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.54 41.0 3.34e-01 84.6% 41.6%
4c92G00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 41.0 4.24e-01 92.3% 90.7%
3ly7A01 3.40.50.11830 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 45.0 3.68e-01 100.0% 78.3%
4c0dB00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.52 37.0 2.88e-01 82.1% 31.4%
2yh6D00 3.30.530.50 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › 0.52 44.0 4.02e-01 100.0% 88.2%
2xglA00 3.10.450.300 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › YebF/Colicin-M immunity protein 0.52 42.0 4.05e-01 92.3% 90.1%
2jiiA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 43.0 3.90e-01 94.9% 87.3%
5iroD00 2.60.40.3530 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 39.0 3.64e-01 83.3% 66.7%
5c2vB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 44.0 2.94e-01 100.0% 27.8%
5z5dA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 43.0 3.26e-01 96.2% 82.9%
3ff0A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 41.0 3.49e-01 93.6% 87.2%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 37.0 3.72e-01 88.5% 76.5%
3wa2X01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 39.0 3.86e-01 88.5% 81.6%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4931072 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.67 49.0 5.13e-01 88.5% 85.7%
4122019 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.66 45.0 4.00e-01 71.8% 56.5%
3967986 4.7.1.2 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › ROF 0.65 54.0 5.45e-01 91.0% 100.0%
4946993 4.1.1.479 ↗ beta barrels › SH3 › SH3 › SH3 › eIF-5a 0.65 48.0 5.02e-01 88.5% 87.1%
3483489 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 48.0 4.88e-01 89.7% 81.3%
4997059 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.65 50.0 5.12e-01 89.7% 86.7%
3643549 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.64 47.0 4.67e-01 89.7% 76.2%
4942589 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.63 48.0 5.00e-01 88.5% 91.4%
3750522 4.1.1.218 ↗ beta barrels › SH3 › SH3 › SH3 › PWP3A-B_N 0.63 45.0 3.98e-01 76.9% 52.7%
3255599 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 53.0 5.17e-01 92.3% 95.3%
3931055 4.1.1.311 ↗ beta barrels › SH3 › SH3 › SH3 › BRWD_AD 0.62 49.0 5.01e-01 88.5% 89.3%
3581093 4292.2.1.0 ↗ a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.62 53.0 5.34e-01 98.7% 96.2%
3226615 4.1.1.389 ↗ beta barrels › SH3 › SH3 › SH3 › PF30352 0.60 44.0 4.20e-01 89.7% 65.3%
3177469 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 45.0 4.75e-01 79.5% 88.6%
3399965 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 44.0 4.21e-01 88.5% 67.8%
3278725 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 48.0 3.13e-01 88.5% 27.8%
3788062 3761.1.1.0 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related 0.57 39.0 3.89e-01 71.8% 73.8%
3514681 7089.1.1.0 ↗ a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.57 41.0 4.54e-01 82.1% 100.0%
3369627 5.1.4.226 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF7899 0.57 47.0 3.01e-01 94.9% 18.6%
3742908 4075.1.1.2 ↗ a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 0.57 44.0 4.20e-01 85.9% 87.4%
4990442 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.56 45.0 4.52e-01 92.3% 87.5%
5018172 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.56 43.0 4.34e-01 84.6% 92.5%
3632113 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.55 45.0 4.10e-01 94.9% 87.8%
3925731 4.1.1.41 ↗ beta barrels › SH3 › SH3 › SH3 › NOT2_3_5_C 0.55 39.0 3.08e-01 82.1% 32.4%
3573300 5.1.3.26 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_2 0.55 45.0 2.96e-01 92.3% 42.7%
3487833 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.55 45.0 2.95e-01 93.6% 25.5%
3421524 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 46.0 2.99e-01 97.4% 70.7%
3383768 220.1.1.80 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › RME-8_N 0.54 43.0 3.49e-01 87.2% 60.0%
3242138 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.54 35.0 3.86e-01 70.5% 88.3%
3867302 5.1.4.7 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1 0.54 44.0 2.90e-01 93.6% 20.3%
4024905 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.54 46.0 3.36e-01 97.4% 50.9%
3297966 4.25.1.2 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD 0.54 44.0 3.88e-01 93.6% 88.3%
3236693 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 41.0 2.87e-01 85.9% 42.1%
3781393 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.53 41.0 4.03e-01 84.6% 91.7%
3963679 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.53 34.0 3.52e-01 82.1% 68.9%
5047738 5.1.5.11 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PQQ_2 0.53 42.0 2.79e-01 92.3% 62.8%
3642585 331.4.1.2 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF 0.53 45.0 3.87e-01 98.7% 73.1%
5039153 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 42.0 2.76e-01 92.3% 25.8%
3274309 2003.1.2.18 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.52 42.0 2.54e-01 88.5% 93.7%
4961581 5.1.3.270 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR 0.52 43.0 2.83e-01 97.4% 55.2%
3468093 243.3.1.19 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.52 43.0 4.01e-01 92.3% 76.5%
3850815 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 41.0 3.38e-01 85.9% 57.9%
3255188 10.32.1.2 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C 0.52 43.0 3.59e-01 93.6% 80.0%
3561347 11.1.1.247 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG_plexin 0.52 40.0 3.81e-01 85.9% 88.4%
3968921 5.1.3.16 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PhoX 0.51 41.0 2.52e-01 92.3% 24.8%
3744711 4.1.1.41 ↗ beta barrels › SH3 › SH3 › SH3 › NOT2_3_5_C 0.51 37.0 2.95e-01 84.6% 35.8%
4024322 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 40.0 4.10e-01 92.3% 94.7%