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JQ768459.1__AFH14908.1__Lu11_0370__00377
Bact-VirJQ768459.1__AFH14908.1__Lu11_0370__00377
Identity
- Accession:
- JQ768459 ↗
- Kingdom:
- phage
Quality
79.0
mean pLDDT
Cluster
View cluster (4 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-62
Domain cluster:
rep: rifoxyd1_full_scaffold_5_prodigal-single.1__X__X__00030__D14-56
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3kxtA00 | 2.30.30.610 | Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 | 0.73 | 62.0 | 6.15e-01 | 96.2% | 94.6% |
| 1b7tA02 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.66 | 48.0 | 4.88e-01 | 88.7% | 78.8% |
| 5i4eA01 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.65 | 46.0 | 4.83e-01 | 86.8% | 87.0% |
| 5ajqA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.64 | 44.0 | 3.76e-01 | 84.9% | 44.2% |
| 6fezA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.62 | 43.0 | 3.63e-01 | 73.6% | 94.7% |
| 2y8tA03 | 2.10.70.70 | Mainly Beta › Ribbon › Complement Module; domain 1 › | 0.61 | 42.0 | 4.16e-01 | 77.4% | 69.1% |
| 2wvxA01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.61 | 43.0 | 2.77e-01 | 79.2% | 22.7% |
| 4m4zA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.61 | 45.0 | 4.72e-01 | 88.7% | 93.6% |
| 1x0tA02 | 6.20.50.20 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.61 | 46.0 | 4.93e-01 | 96.2% | 100.0% |
| 2f4mA02 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.61 | 47.0 | 4.87e-01 | 90.6% | 100.0% |
| 3cpfA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 45.0 | 4.30e-01 | 84.9% | 72.3% |
| 2mamA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 46.0 | 3.63e-01 | 88.7% | 39.0% |
| 1azpA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.58 | 47.0 | 4.50e-01 | 100.0% | 87.9% |
| 1df0A02 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.58 | 41.0 | 3.49e-01 | 86.8% | 44.6% |
| 2lt1A00 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.58 | 43.0 | 3.98e-01 | 86.8% | 74.7% |
| 4l8nA03 | 3.30.160.670 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.57 | 42.0 | 3.09e-01 | 83.0% | 92.7% |
| 6bogA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 41.0 | 4.19e-01 | 84.9% | 82.7% |
| 3q5zA02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.56 | 46.0 | 3.59e-01 | 92.5% | 71.1% |
| 1x6bA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.56 | 46.0 | 4.42e-01 | 94.3% | 89.1% |
| 6igbA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.54 | 42.0 | 2.61e-01 | 88.7% | 17.9% |
| 3u4yA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.54 | 40.0 | 2.57e-01 | 84.9% | 20.7% |
| 2ou5A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.54 | 41.0 | 2.97e-01 | 88.7% | 78.9% |
| 3cgbA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.53 | 44.0 | 3.22e-01 | 100.0% | 67.3% |
| 2qkdA01 | 2.20.25.420 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain | 0.53 | 43.0 | 4.49e-01 | 100.0% | 100.0% |
| 2pziB02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.53 | 40.0 | 3.03e-01 | 86.8% | 53.1% |
| 2lezA00 | 3.30.2450.10 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 | 0.51 | 36.0 | 2.97e-01 | 81.1% | 82.5% |
| 2cudA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.51 | 41.0 | 3.70e-01 | 96.2% | 65.8% |
| 5hy7B02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 43.0 | 2.73e-01 | 100.0% | 93.9% |
| 4m7xA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.51 | 35.0 | 3.04e-01 | 75.5% | 65.9% |
| 4cbvA02 | 2.40.50.1020 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain | 0.50 | 41.0 | 3.25e-01 | 94.3% | 52.5% |
| 1ou8A00 | 2.30.30.220 | Mainly Beta › Roll › SH3 type barrels. › SspB-like | 0.50 | 38.0 | 3.25e-01 | 92.5% | 71.7% |
| 3rm5B01 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.50 | 41.0 | 2.63e-01 | 96.2% | 28.8% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4947515 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.75 | 59.0 | 5.68e-01 | 86.8% | 90.0% |
| 5045429 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.75 | 47.0 | 3.88e-01 | 83.0% | 35.8% |
| 4929725 | 375.1.1.289 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF5679 | 0.72 | 55.0 | 5.79e-01 | 84.9% | 100.0% |
| 5020208 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.72 | 55.0 | 5.66e-01 | 83.0% | 88.0% |
| 4928794 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 48.0 | 5.04e-01 | 83.0% | 97.8% |
| 4460368 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.63 | 42.0 | 4.51e-01 | 77.4% | 82.2% |
| 3232445 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.62 | 42.0 | 4.09e-01 | 94.3% | 63.3% |
| 4999716 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.62 | 38.0 | 4.46e-01 | 73.6% | 94.3% |
| 3600232 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.62 | 42.0 | 2.86e-01 | 71.7% | 34.5% |
| 3519023 | 3964.1.1.1 ↗ | beta meanders › OCRE domain of RBM10 › OCRE domain of RBM10 › OCRE domain of RBM10 › OCRE | 0.61 | 42.0 | 3.77e-01 | 73.6% | 51.2% |
| 4981763 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.61 | 43.0 | 4.77e-01 | 96.2% | 100.0% |
| 3179152 | 375.1.1.25 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Tfb4 | 0.61 | 47.0 | 4.43e-01 | 84.9% | 69.2% |
| None | — | 0.59 | 41.0 | 2.61e-01 | 90.6% | 13.1% | |
| 4253165 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.59 | 51.0 | 3.82e-01 | 100.0% | 39.3% |
| 2409823 | 391.1.2.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related | 0.59 | 41.0 | 3.58e-01 | 75.5% | 65.9% |
| 3238367 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.59 | 44.0 | 4.02e-01 | 84.9% | 62.7% |
| 3553625 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.58 | 44.0 | 4.44e-01 | 84.9% | 94.5% |
| 4947463 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.58 | 47.0 | 3.87e-01 | 94.3% | 52.4% |
| 4174179 | 4.8.1.5 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR | 0.58 | 44.0 | 4.49e-01 | 100.0% | 94.0% |
| 3280386 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.58 | 44.0 | 4.40e-01 | 100.0% | 85.5% |
| 4025894 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.57 | 47.0 | 3.81e-01 | 98.1% | 45.9% |
| 3597681 | 5.1.2.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed | 0.57 | 46.0 | 2.84e-01 | 92.5% | 19.1% |
| 5075670 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.57 | 41.0 | 4.39e-01 | 98.1% | 100.0% |
| 3243842 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.57 | 43.0 | 3.60e-01 | 90.6% | 48.2% |
| 5043972 | 375.1.1.26 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 | 0.57 | 43.0 | 3.59e-01 | 96.2% | 45.5% |
| 3620552 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.56 | 43.0 | 4.41e-01 | 88.7% | 92.0% |
| 3174350 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.56 | 43.0 | 4.08e-01 | 84.9% | 93.8% |
| 5024226 | 375.1.1.83 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-TFIIB | 0.56 | 41.0 | 4.37e-01 | 96.2% | 97.8% |
| 3701625 | 375.8.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta | 0.55 | 40.0 | 4.27e-01 | 100.0% | 95.6% |
| 3271043 | 286.1.1.1 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase | 0.54 | 44.0 | 3.14e-01 | 100.0% | 54.2% |
| 3362766 | 386.1.1.4 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED | 0.54 | 33.0 | 3.43e-01 | 84.9% | 64.0% |
| 3928189 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.53 | 41.0 | 2.81e-01 | 86.8% | 77.6% |
| 4966836 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 38.0 | 3.86e-01 | 84.9% | 81.8% |
| 3907533 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.52 | 34.0 | 3.68e-01 | 79.2% | 87.5% |
| 4998697 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.52 | 44.0 | 4.29e-01 | 98.1% | 93.3% |
| 3813800 | 2008.1.1.107 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD | 0.51 | 42.0 | 3.08e-01 | 94.3% | 50.7% |
| 3040109 | 375.1.1.19 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD | 0.51 | 36.0 | 3.81e-01 | 88.7% | 89.4% |
| 3265225 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.51 | 35.0 | 2.21e-01 | 73.6% | 91.0% |