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JQ801337.1__AFH14497.1__VvAW1_00025c__00025

Bact-Vir

JQ801337.1__AFH14497.1__VvAW1_00025c__00025

Identity

Accession:
JQ801337 ↗
Kingdom:
phage

Quality

86.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_VvAW1

TaxID: 1168281

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 54-136
PDB
Domain cluster: rep: NC_048754.1__YP_009844237.1__HWC10_gp082__00082__D98-181
D2 medium residues 142-180
PDB
Domain cluster: rep: SR-VP_4-6_scaffold_141_2201553_prodigal-single.1__X__X__00367__D226-276
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ku3A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 55.0 4.84e-01 82.1% 55.7%
6xiuA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.71 52.0 3.94e-01 82.1% 39.6%
2ltuA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.68 53.0 4.67e-01 100.0% 56.5%
3c3dA02 1.10.8.240 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › CofD-like domain 0.68 49.0 3.84e-01 79.5% 89.8%
1kq4A00 3.30.1360.170 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.63 50.0 3.14e-01 87.2% 27.6%
2aplA01 1.10.8.330 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PG0816-like 0.63 54.0 4.55e-01 100.0% 82.4%
2iw3A03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 44.0 2.88e-01 89.7% 27.9%
3s64A00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.59 47.0 3.75e-01 89.7% 80.2%
1ywxA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.54 41.0 3.27e-01 92.3% 55.4%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3702243 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.72 51.0 4.62e-01 100.0% 54.5%
3204020 103.1.1.1 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA 0.65 48.0 4.54e-01 100.0% 66.7%
4947306 4095.1.1.1 ↗ alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N 0.62 48.0 3.70e-01 100.0% 34.0%
3497187 103.1.1.2 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › CUE 0.60 48.0 4.61e-01 100.0% 77.8%
1031361 103.1.1.50 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › EF-Ts_N 0.58 40.0 3.69e-01 100.0% 50.0%