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JQ809663.1__AFJ75512.1__Smp_42__00043

Bact-Vir

JQ809663.1__AFJ75512.1__Smp_42__00043

Identity

Accession:
JQ809663 ↗
Kingdom:
phage

Quality

86.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Peduoviridae› Simpcentumvirus› Stenotrophomonas_phage_Smp131

TaxID: 1168563

Cluster

View cluster (138 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 26-68
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lxxA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.79 64.0 4.42e-01 93.0% 30.9%
1xkpC00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.70 60.0 4.36e-01 100.0% 63.5%
3hkoA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.68 38.0 2.38e-01 100.0% 9.7%
1s28A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.68 57.0 4.14e-01 100.0% 58.5%
1zodA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.64 55.0 3.89e-01 100.0% 63.8%
3g2bA00 1.10.10.1150 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) 0.64 37.0 2.90e-01 100.0% 24.4%
2gupA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.63 52.0 4.15e-01 100.0% 44.3%
3a2bA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.62 51.0 3.78e-01 100.0% 61.4%
3c19A01 3.30.70.1380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transcriptional regulatory protein pf0864 domain like 0.62 47.0 3.74e-01 88.4% 72.7%
1k3sA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.61 48.0 3.83e-01 100.0% 75.0%
1tolA01 2.30.27.10 Mainly Beta › Roll › Phage FD Coat Protein, Membrane penetration domain › Phage FD Coat Protein,Membrane penetration domain 0.60 41.0 3.35e-01 72.1% 43.9%
2yweA03 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.60 46.0 3.85e-01 88.4% 75.6%
4obmA00 3.40.630.190 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein 0.59 47.0 3.02e-01 100.0% 26.0%
6v04A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 43.0 3.20e-01 83.7% 90.6%
3o6qA02 3.30.70.2720 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 47.0 3.64e-01 100.0% 39.5%
2kheA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.58 36.0 2.89e-01 76.7% 30.3%
2ewlA00 3.30.160.330 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 43.0 4.11e-01 93.0% 69.6%
4e98C00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 41.0 3.33e-01 88.4% 70.5%
3nroA00 3.40.630.190 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein 0.57 44.0 2.92e-01 100.0% 28.9%
1js3A03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.56 45.0 3.68e-01 100.0% 83.5%
3wy7D01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.56 44.0 3.42e-01 100.0% 64.2%
2xzmG00 1.10.455.10 Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S7 › Ribosomal protein S7/S5 0.56 43.0 2.95e-01 95.3% 60.9%
1mhxA00 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.56 39.0 3.61e-01 88.4% 53.8%
3fetA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.56 47.0 3.21e-01 100.0% 35.8%
3tqfA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 47.0 3.24e-01 100.0% 81.8%
4paaA03 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.55 45.0 3.05e-01 100.0% 42.9%
3hrgA01 3.30.420.250 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, N-terminal domain 0.55 42.0 3.19e-01 100.0% 34.3%
1i42A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 38.0 3.23e-01 88.4% 38.2%
1eg7A02 3.30.1510.10 Alpha Beta › 2-Layer Sandwich › Domain 2, N(10)-formyltetrahydrofolate synthetase › Domain 2, N(10)-formyltetrahydrofolate synthetase 0.55 43.0 3.28e-01 95.3% 89.9%
3ffrA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.55 46.0 3.49e-01 100.0% 71.1%
6eudA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 47.0 3.16e-01 100.0% 82.4%
2bm0A03 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.54 34.0 3.32e-01 81.4% 52.9%
2qrdE01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.54 43.0 2.86e-01 100.0% 21.1%
1vloA01 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.54 44.0 3.20e-01 100.0% 55.0%
1i24A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 44.0 2.86e-01 100.0% 55.5%
2c7hA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 43.0 3.50e-01 95.3% 81.4%
5aa5E00 1.10.645.10 Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B 0.52 39.0 2.25e-01 88.4% 34.0%
4le7A01 2.90.10.30 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › 0.51 42.0 2.91e-01 100.0% 84.9%
4narA01 3.40.50.11440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › LarA, N-terminal domain 0.51 39.0 2.60e-01 100.0% 43.0%
1q9jB02 3.30.559.30 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain 0.51 41.0 2.83e-01 100.0% 29.0%
2pe4A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.51 44.0 2.56e-01 100.0% 72.4%
2gpjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 41.0 3.28e-01 100.0% 80.0%
4mtnA01 3.30.1480.10 Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain 0.50 40.0 3.31e-01 100.0% 83.2%
3pm9A04 3.30.70.2740 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 37.0 3.23e-01 95.3% 80.5%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
6634 241.1.1.3 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › CesT 0.68 57.0 4.14e-01 100.0% 58.5%
4031138 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.63 45.0 4.12e-01 79.1% 96.7%
3593808 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.63 41.0 3.10e-01 74.4% 29.0%
3633569 101.1.8.10 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › DUF3435 0.62 36.0 2.74e-01 100.0% 22.0%
3430159 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.61 52.0 4.53e-01 100.0% 66.2%
3516174 5050.1.1.31 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › SLC52_ribofla_tr 0.61 42.0 2.70e-01 74.4% 56.6%
3929069 5050.1.1.31 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › SLC52_ribofla_tr 0.61 42.0 2.71e-01 74.4% 59.5%
3267362 304.128.1.0 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB 0.60 46.0 3.69e-01 83.7% 42.4%
3713128 304.120.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.60 44.0 3.88e-01 83.7% 85.7%
3597374 7510.1.1.0 ↗ a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like 0.59 41.0 2.76e-01 88.4% 18.3%
5001130 101.1.2.44 ↗ alpha arrays › HTH › HTH › winged helix domain › Ribosomal_S25 0.59 46.0 3.77e-01 100.0% 79.0%
3596149 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.58 46.0 3.55e-01 100.0% 73.3%
3821886 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.58 46.0 4.03e-01 100.0% 62.7%
3448062 109.4.1.1254 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.57 37.0 2.08e-01 74.4% 5.8%
4002159 1073.1.1.1 ↗ alpha arrays › Mitochondrial calcium uniporter (MCU) › Mitochondrial calcium uniporter (MCU) › Mitochondrial calcium uniporter (MCU) › MCU 0.55 45.0 2.81e-01 100.0% 29.1%
3790485 2.1.1.224 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF29084 0.55 38.0 2.61e-01 100.0% 18.3%
3479534 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.55 42.0 2.51e-01 93.0% 43.3%
4076950 304.20.1.2 ↗ a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › Nrap_D3 0.54 43.0 3.01e-01 100.0% 35.4%
3513183 221.13.1.0 ↗ a+b two layers › beta-Grasp › Mitochondrial calcium uniporter N-terminal domain › Mitochondrial calcium uniporter N-terminal domain 0.54 45.0 3.54e-01 95.3% 44.2%
4032339 3585.1.1.0 ↗ a+b two layers › DNA polymerase III C-terminal domain › DNA polymerase III C-terminal domain › DNA polymerase III C-terminal domain 0.53 41.0 3.76e-01 100.0% 88.6%
4004088 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.53 36.0 3.70e-01 86.0% 77.5%
3370362 4015.1.1.1 ↗ alpha complex topology › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › Sec1 0.53 43.0 2.84e-01 100.0% 45.7%
3383958 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.53 44.0 2.73e-01 100.0% 61.6%
3959969 3270.1.1.1 ↗ a+b two layers › a+b domain in heme oxygenase › a+b domain in heme oxygenase › a+b domain in heme oxygenase › DUF2470 0.53 44.0 3.53e-01 100.0% 46.7%
3867661 323.1.1.0 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.53 43.0 2.55e-01 100.0% 11.5%
3459296 304.120.1.13 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › RRM_DEAH11 0.53 39.0 3.25e-01 86.0% 65.6%
3507945 221.4.1.0 ↗ a+b two layers › beta-Grasp › Nudix › Nudix 0.52 44.0 2.88e-01 100.0% 60.9%
3241420 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.52 37.0 2.27e-01 81.4% 28.4%
3365412 4015.1.1.1 ↗ alpha complex topology › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › Sec1 0.52 42.0 2.72e-01 100.0% 39.6%
3396844 2006.1.6.4 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › Ku_N 0.52 43.0 2.85e-01 100.0% 47.6%
3711985 3883.1.1.1 ↗ alpha bundles › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-OH_P_transf 0.52 42.0 2.71e-01 97.7% 36.4%
3329737 304.9.1.157 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_DEAH11 0.52 38.0 3.18e-01 88.4% 67.8%
3197151 101.1.8.10 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › DUF3435 0.52 38.0 2.62e-01 79.1% 86.0%
3423758 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 44.0 2.81e-01 97.7% 40.4%
5057051 304.130.1.0 ↗ a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain 0.51 37.0 3.35e-01 90.7% 84.0%
4948389 2004.1.1.164 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Roc 0.51 43.0 3.00e-01 100.0% 100.0%
5039316 304.102.1.2 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruD 0.51 39.0 2.66e-01 100.0% 86.0%
3323014 304.4.1.68 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › RRM_DEAH11 0.51 38.0 3.35e-01 95.3% 78.8%
None — 0.51 41.0 2.51e-01 93.0% 32.9%
3289468 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.51 38.0 3.25e-01 81.4% 68.6%
5073431 1075.1.1.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain 0.50 42.0 2.40e-01 100.0% 16.8%
None — 0.50 40.0 2.47e-01 93.0% 32.9%
4991990 878.1.1.0 ↗ a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 0.50 40.0 3.15e-01 95.3% 96.0%
223785 4963.1.1.1 ↗ alpha complex topology › N-terminal additional helical subdomain in reovirus polymerase lambda3 › N-terminal additional helical subdomain in reovirus polymerase lambda3 › N-terminal additional helical subdomain in reovirus polymerase lambda3 › RdRP_4 0.50 40.0 2.43e-01 100.0% 12.3%
4217523 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.50 36.0 2.78e-01 86.0% 68.0%
D2 high residues 76-175
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3lysA00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.88 69.0 6.82e-01 100.0% 78.1%
2khqA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.78 60.0 6.03e-01 100.0% 80.4%
3ii9B01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.64 42.0 3.82e-01 77.0% 51.5%
3s6jE02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.63 41.0 4.74e-01 100.0% 94.2%
3aafA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 42.0 4.16e-01 82.0% 67.9%
3hsqA02 1.20.1180.10 Mainly Alpha › Up-down Bundle › Udp N-acetylglucosamine O-acyltransferase; Domain 2 › Udp N-acetylglucosamine O-acyltransferase, C-terminal domain 0.59 34.0 4.00e-01 89.0% 83.8%
4mo0A00 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.58 29.0 3.27e-01 95.0% 59.5%
3purA03 1.20.58.1360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 39.0 3.83e-01 100.0% 66.4%
5b00A00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.56 39.0 2.85e-01 71.0% 37.2%
4cgsA00 3.40.91.90 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain 0.55 40.0 3.46e-01 77.0% 79.2%
1jb0A00 1.20.1130.10 Mainly Alpha › Up-down Bundle › Photosystem I p700 chlorophyll A apoprotein A1 › Photosystem I PsaA/PsaB 0.54 41.0 2.49e-01 83.0% 28.4%
1cchA00 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.53 40.0 4.37e-01 84.0% 100.0%
1gq1A01 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.52 44.0 4.44e-01 93.0% 98.0%
3hmfA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.52 46.0 4.41e-01 100.0% 91.4%
2wvnA01 1.20.120.1020 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Prion-inhibition and propagation, HeLo domain 0.51 40.0 3.15e-01 84.0% 88.7%
3rvyA01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.51 30.0 2.97e-01 100.0% 51.8%
1qmgA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.50 40.0 3.00e-01 90.0% 93.2%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5073433 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.68 62.0 5.90e-01 98.0% 88.7%
53471 4033.1.1.0 ↗ alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like 0.65 43.0 3.99e-01 78.0% 54.9%
5062879 4033.1.1.1 ↗ alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA_dh_N 0.62 42.0 4.02e-01 78.0% 60.0%
5050709 4033.1.1.0 ↗ alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like 0.62 47.0 4.18e-01 81.0% 60.0%
4951774 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 40.0 3.82e-01 94.0% 56.5%
3774148 148.1.3.221 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › NPHP3_hel 0.61 36.0 2.53e-01 91.0% 18.1%
4251290 101.1.2.573 ↗ alpha arrays › HTH › HTH › winged helix domain › NPHP3_hel 0.60 33.0 3.38e-01 82.0% 53.0%
3911302 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.60 31.0 3.70e-01 94.0% 75.4%
3926959 605.6.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › HP1531-like › HP1531-like 0.59 42.0 4.48e-01 91.0% 85.9%
4631400 5104.1.1.0 ↗ a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.59 30.0 2.83e-01 73.0% 38.3%
5048692 4033.1.1.0 ↗ alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like 0.57 48.0 4.31e-01 95.0% 65.0%
2138587 2498.1.1.23 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M49 0.57 43.0 2.65e-01 81.0% 93.7%
3718443 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.57 39.0 4.03e-01 71.0% 91.6%
4935577 4033.1.1.1 ↗ alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA_dh_N 0.57 37.0 3.63e-01 78.0% 60.0%
4422002 107.1.1.1 ↗ alpha arrays › Cytochrome c-like › Cytochrome c › Cytochrome c › Cytochrom_C 0.54 40.0 4.22e-01 77.0% 97.6%
3593318 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 34.0 3.43e-01 96.0% 61.9%
4287267 3236.2.1.8 ↗ alpha complex topology › Cation-proton antiporter › Sodium-dependent citrate symporter › Sodium-dependent citrate symporter › Asp-Al_Ex 0.53 45.0 3.09e-01 94.0% 79.5%
5071736 2004.1.1.277 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › HerA_C 0.53 46.0 3.13e-01 100.0% 31.8%
3319097 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 42.0 3.48e-01 85.0% 68.0%
5002845 192.8.1.0 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.52 37.0 3.52e-01 90.0% 61.7%
4011300 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.52 29.0 3.08e-01 91.0% 58.9%
3783943 6155.1.1.0 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.51 36.0 3.82e-01 99.0% 81.1%
5018158 101.1.2.886 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF790 0.51 29.0 2.90e-01 89.0% 50.0%
3642800 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.50 36.0 3.52e-01 94.0% 66.7%
D3 high residues 200-374
PDB
Domain cluster: rep: IMGVR_UViG_3300009506_002638-3300009506-Ga0118657_1006709312__D23-176
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3nkhA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.80 76.0 6.94e-01 100.0% 86.9%
4a8eA02 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.79 64.0 6.43e-01 96.0% 82.1%
1aihA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.79 62.0 6.28e-01 100.0% 82.4%
1ae9A00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.79 67.0 6.85e-01 95.4% 90.6%
5jk0B01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.77 69.0 7.01e-01 100.0% 96.5%
2a3vA02 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.76 73.0 6.76e-01 100.0% 91.9%
1f44A01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.72 68.0 6.52e-01 100.0% 91.8%
4acoA02 1.10.443.20 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Centromere DNA-binding protein complex CBF3 subunit, domain 2 0.69 62.0 4.89e-01 96.0% 53.5%
3sqiA02 1.10.443.20 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Centromere DNA-binding protein complex CBF3 subunit, domain 2 0.67 60.0 5.04e-01 96.0% 62.2%
3mn2A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.60 32.0 3.98e-01 86.3% 82.4%
2odmA00 1.10.287.750 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like 0.59 25.0 3.63e-01 86.3% 86.1%
4ip8A00 1.10.132.110 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Serum amyloid A protein 0.51 26.0 3.28e-01 77.1% 81.0%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3983469 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.88 60.0 7.12e-01 84.6% 96.8%
3969115 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.87 50.0 6.41e-01 82.9% 95.2%
4043462 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 56.0 6.77e-01 82.9% 97.5%
3943153 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 59.0 6.87e-01 82.9% 96.2%
4004483 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 75.0 7.28e-01 100.0% 85.8%
4093657 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 58.0 6.55e-01 83.4% 91.1%
4032881 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 58.0 6.58e-01 84.0% 91.9%
5052541 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 57.0 6.65e-01 84.6% 96.8%
4312876 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 59.0 6.75e-01 82.9% 96.9%
4947440 101.1.8.26 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Ribosomal_L32p 0.83 56.0 6.35e-01 83.4% 88.9%
3943931 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 50.0 6.21e-01 85.7% 93.0%
5052502 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 59.0 6.71e-01 84.0% 94.8%
4981577 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 55.0 6.43e-01 84.0% 93.6%
4936284 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 51.0 6.31e-01 83.4% 95.7%
4153666 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 58.0 6.52e-01 84.0% 92.6%
4428937 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 54.0 6.43e-01 84.0% 97.5%
4980638 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 65.0 7.07e-01 90.3% 96.7%
4044870 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 56.0 6.31e-01 84.6% 91.9%
4952765 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 58.0 6.46e-01 84.6% 92.1%
4112553 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 59.0 6.44e-01 83.4% 91.0%
4095013 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 59.0 6.62e-01 84.6% 97.8%
5035582 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 51.0 6.19e-01 83.4% 97.4%
4981966 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 73.0 6.95e-01 100.0% 84.0%
4959043 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 57.0 6.63e-01 82.9% 99.2%
4994277 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 68.0 6.75e-01 100.0% 86.7%
4380833 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 66.0 6.78e-01 100.0% 90.9%
3989311 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 53.0 6.09e-01 84.6% 90.8%
5029991 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 52.0 6.10e-01 83.4% 92.8%
4969226 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 58.0 6.57e-01 85.1% 97.8%
5059725 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 67.0 6.64e-01 100.0% 85.6%
3975337 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 57.0 6.50e-01 84.0% 96.3%
4680466 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.78 48.0 5.73e-01 83.4% 89.2%
4960057 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.78 55.0 6.13e-01 82.9% 90.0%
1267972 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.78 62.0 6.51e-01 81.7% 98.7%
4392937 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.78 63.0 6.64e-01 100.0% 94.2%
5016957 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 73.0 7.31e-01 100.0% 99.4%
4183457 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 61.0 6.64e-01 99.4% 97.9%
4966027 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 67.0 6.60e-01 100.0% 85.9%
4004361 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 55.0 6.30e-01 80.6% 94.8%
4446668 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.77 60.0 6.69e-01 82.9% 100.0%
5083074 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.76 59.0 6.38e-01 82.9% 92.7%
5000880 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.76 65.0 6.49e-01 100.0% 87.2%
4231677 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.75 57.0 6.26e-01 82.9% 94.5%
4180367 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.75 61.0 6.31e-01 84.6% 93.3%
4410774 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.75 45.0 5.45e-01 82.9% 90.4%
5076857 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.75 62.0 6.27e-01 100.0% 86.9%
4964439 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.74 70.0 6.49e-01 100.0% 89.3%
5073434 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.74 68.0 6.48e-01 97.1% 86.5%
3589594 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.74 60.0 6.36e-01 84.0% 95.5%
4134015 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.73 59.0 6.28e-01 82.9% 96.1%
4177205 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.73 40.0 5.25e-01 74.3% 96.8%
3587645 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.73 54.0 6.11e-01 85.1% 100.0%
5081700 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.72 58.0 6.01e-01 83.4% 92.1%
4028841 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.71 53.0 5.99e-01 82.9% 99.3%
3271483 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.71 67.0 6.50e-01 100.0% 95.3%
184514 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.71 56.0 5.93e-01 81.7% 97.5%
4965845 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.71 66.0 6.42e-01 100.0% 90.5%
3290810 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.70 58.0 5.88e-01 84.6% 93.5%
3933250 6126.1.1.0 ↗ alpha bundles › Helical domain in EHD2 › Helical domain in EHD2 › Helical domain in EHD2 0.69 27.0 3.45e-01 88.0% 58.2%
3251731 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.68 54.0 5.71e-01 84.0% 92.9%
5044666 101.1.8.2 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Topoisom_I 0.63 50.0 5.25e-01 83.4% 91.3%
3226857 101.1.1.4 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PAX 0.58 24.0 3.30e-01 73.7% 75.3%