←Back to structures
JQ867099.1__AFM54781.1__P2559S_03__00003
Bact-VirJQ867099.1__AFM54781.1__P2559S_03__00003
Identity
- Accession:
- JQ867099 ↗
- Kingdom:
- phage
Quality
94.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-70
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3l5iA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.68 | 47.0 | 4.19e-01 | 100.0% | 52.3% |
| 3vpbB03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.64 | 49.0 | 4.12e-01 | 84.4% | 90.2% |
| 3cu7A05 | 2.60.40.1930 | Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain | 0.60 | 44.0 | 3.77e-01 | 100.0% | 48.1% |
| 2vsdA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 43.0 | 3.83e-01 | 98.4% | 52.7% |
| 4myjA04 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.59 | 39.0 | 3.02e-01 | 96.9% | 33.3% |
| 2a74A05 | 2.60.40.1930 | Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain | 0.59 | 44.0 | 3.73e-01 | 100.0% | 48.6% |
| 2bv4A00 | 2.60.120.400 | Mainly Beta › Sandwich › Jelly Rolls › Calcium-mediated lectin | 0.59 | 42.0 | 3.46e-01 | 100.0% | 42.5% |
| 1d2oA01 | 2.60.40.1140 | Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain | 0.58 | 44.0 | 3.74e-01 | 100.0% | 48.6% |
| 1zq7A01 | 3.30.700.20 | Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Hypothetical protein ph0010; domain 1 | 0.57 | 51.0 | 4.08e-01 | 100.0% | 50.4% |
| 3cwzB03 | 2.60.60.20 | Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain | 0.56 | 38.0 | 3.18e-01 | 100.0% | 38.0% |
| 1w15A00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.56 | 44.0 | 3.48e-01 | 100.0% | 41.7% |
| 3qjlA01 | 3.30.70.1890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 49.0 | 4.01e-01 | 100.0% | 96.7% |
| 2xbzA00 | 2.60.40.2380 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 40.0 | 3.17e-01 | 100.0% | 37.1% |
| 1zoqA00 | 2.60.200.10 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.55 | 48.0 | 3.46e-01 | 100.0% | 89.5% |
| 1jz7A04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 42.0 | 3.59e-01 | 100.0% | 50.9% |
| 7t7zA01 | 2.60.120.430 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin | 0.55 | 46.0 | 3.51e-01 | 100.0% | 40.5% |
| 5f7uA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 43.0 | 3.58e-01 | 100.0% | 49.5% |
| 2wngA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 40.0 | 3.65e-01 | 100.0% | 58.6% |
| 2w3jA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.54 | 41.0 | 3.23e-01 | 100.0% | 38.7% |
| 3oqgA00 | 3.40.1440.50 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › | 0.53 | 46.0 | 3.39e-01 | 98.4% | 39.2% |
| 3b7yA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.53 | 45.0 | 3.56e-01 | 100.0% | 88.9% |
| 3ld7A00 | 2.60.320.10 | Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain | 0.52 | 47.0 | 4.22e-01 | 98.4% | 100.0% |
| 2lw6A00 | 2.60.320.40 | Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › | 0.51 | 44.0 | 4.16e-01 | 100.0% | 90.0% |
| 5jv4A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.51 | 42.0 | 3.40e-01 | 100.0% | 97.9% |
| 1yq2A04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 42.0 | 3.44e-01 | 100.0% | 50.4% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3483331 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.72 | 50.0 | 4.73e-01 | 100.0% | 61.3% |
| 3917355 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.70 | 48.0 | 4.15e-01 | 100.0% | 46.0% |
| 3885397 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.70 | 46.0 | 3.68e-01 | 100.0% | 33.8% |
| 5023116 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.67 | 46.0 | 4.00e-01 | 100.0% | 47.4% |
| 5023115 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.67 | 45.0 | 4.54e-01 | 100.0% | 69.2% |
| 3214472 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.66 | 46.0 | 3.61e-01 | 100.0% | 34.8% |
| 4966592 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.66 | 39.0 | 4.20e-01 | 95.3% | 69.1% |
| 5023642 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.65 | 44.0 | 3.92e-01 | 100.0% | 50.0% |
| 3531195 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.62 | 43.0 | 3.84e-01 | 100.0% | 51.1% |
| 4940958 | 223.8.1.0 ↗ | a+b three layers › Profilin-like › LapD periplasmic domain › LapD periplasmic domain | 0.62 | 46.0 | 4.04e-01 | 100.0% | 53.7% |
| 3273772 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.62 | 46.0 | 4.31e-01 | 100.0% | 64.6% |
| 3523462 | 2487.1.1.7 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA | 0.62 | 54.0 | 4.18e-01 | 100.0% | 98.0% |
| 5003527 | 2492.1.1.7 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ | 0.62 | 45.0 | 3.41e-01 | 96.9% | 33.3% |
| 3878447 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 43.0 | 4.13e-01 | 100.0% | 64.0% |
| 5032786 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 45.0 | 4.04e-01 | 100.0% | 57.8% |
| 3959592 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.58 | 44.0 | 3.26e-01 | 100.0% | 32.9% |
| 1807145 | 11.1.1.102 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › A2M_BRD | 0.58 | 43.0 | 3.64e-01 | 100.0% | 46.4% |
| 4109061 | 4139.1.1.1 ↗ | a+b two layers › AMMECR1-like › AMMECR1-like › AMMECR1-like › AMMECR1 | 0.58 | 50.0 | 4.30e-01 | 95.3% | 62.0% |
| 3476166 | 11.1.1.102 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › A2M_BRD | 0.58 | 43.0 | 3.49e-01 | 100.0% | 42.5% |
| 3856634 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 41.0 | 3.65e-01 | 100.0% | 50.5% |
| 3276503 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 43.0 | 3.65e-01 | 100.0% | 49.5% |
| 5042718 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 42.0 | 4.03e-01 | 100.0% | 69.3% |
| 3938250 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.56 | 43.0 | 3.30e-01 | 100.0% | 36.0% |
| 3406849 | 11.1.1.102 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › A2M_BRD | 0.55 | 41.0 | 3.60e-01 | 100.0% | 53.7% |
| 1836327 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.55 | 48.0 | 4.84e-01 | 100.0% | 98.5% |
| 3780293 | 11.1.3.4 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Cu,Zn superoxide dismutase-like › CHRD | 0.54 | 45.0 | 3.67e-01 | 100.0% | 49.2% |
| 3410342 | 11.1.1.102 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › A2M_BRD | 0.54 | 39.0 | 3.38e-01 | 100.0% | 47.6% |
| 3692139 | 11.1.1.925 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7918 | 0.54 | 47.0 | 3.29e-01 | 100.0% | 59.2% |
| 3720404 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 47.0 | 3.46e-01 | 100.0% | 43.9% |
| 3653711 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.54 | 47.0 | 3.33e-01 | 100.0% | 71.0% |
| 3196105 | 11.1.1.1047 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF29061 | 0.53 | 47.0 | 3.74e-01 | 100.0% | 59.2% |
| 3634079 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 46.0 | 3.28e-01 | 100.0% | 45.5% |
| 3248334 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.53 | 46.0 | 3.69e-01 | 100.0% | 93.8% |
| 5068247 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 44.0 | 3.59e-01 | 100.0% | 50.4% |
| 3307787 | 207.1.1.43 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_3 | 0.53 | 47.0 | 2.76e-01 | 100.0% | 12.7% |
| 4959363 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 40.0 | 3.45e-01 | 100.0% | 52.0% |
| 3173935 | 3448.1.1.0 ↗ | beta duplicates or obligate multimers › Multivesicular body subunit 12B MABP domain › Multivesicular body subunit 12B MABP domain › Multivesicular body subunit 12B MABP domain | 0.53 | 48.0 | 3.48e-01 | 100.0% | 37.6% |
| None | — | 0.51 | 43.0 | 3.08e-01 | 100.0% | 62.7% | |
| 4184614 | 11.1.1.540 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Peptidase_M66 | 0.51 | 46.0 | 3.46e-01 | 100.0% | 45.2% |