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JQ867099.1__AFM54808.1__P2559S_30__00030

Bact-Vir

JQ867099.1__AFM54808.1__P2559S_30__00030

Identity

Accession:
JQ867099 ↗
Kingdom:
phage

Quality

73.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 25-76
PDB
Domain cluster: representative
CATH (57)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4k08A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.78 57.0 4.08e-01 76.9% 31.2%
2vrsA03 2.60.90.40 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.77 68.0 5.02e-01 100.0% 100.0%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.71 56.0 4.28e-01 100.0% 37.5%
3fyfA00 2.40.128.410 Mainly Beta › Beta Barrel › Lipocalin › 0.71 56.0 4.11e-01 90.4% 60.4%
1n2bB02 3.30.1300.10 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain 0.69 50.0 4.10e-01 80.8% 92.3%
1gyvA00 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.68 53.0 4.04e-01 84.6% 87.5%
3bnvD00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.68 57.0 4.24e-01 96.2% 69.2%
7xr9E01 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.68 52.0 3.52e-01 84.6% 33.5%
3anzC00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.68 50.0 3.12e-01 80.8% 89.8%
1pbyA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.67 56.0 4.52e-01 98.1% 47.2%
3atsA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.65 55.0 4.25e-01 94.2% 49.1%
2cm4A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.65 57.0 4.15e-01 100.0% 36.6%
5w8mA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.64 54.0 3.69e-01 98.1% 96.9%
1y8cA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.64 55.0 5.24e-01 98.1% 83.3%
3mh9A00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.64 50.0 3.49e-01 94.2% 28.8%
1lf7A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 54.0 3.86e-01 100.0% 37.8%
2zxqA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.63 54.0 3.39e-01 98.1% 25.4%
2a22B00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.62 54.0 3.64e-01 100.0% 93.6%
6serA01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.62 54.0 3.58e-01 100.0% 28.1%
1v2bB00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.62 52.0 3.79e-01 96.2% 74.2%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.61 47.0 3.97e-01 98.1% 48.9%
1zc3B00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 53.0 4.18e-01 100.0% 48.6%
3tp4B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 46.0 3.93e-01 86.5% 74.2%
4mypA00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 51.0 3.99e-01 100.0% 68.6%
2iecD00 3.30.1300.20 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 7,8-dihydroneopterin aldolase (MptD) 0.59 50.0 3.91e-01 96.2% 65.0%
1em2A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 48.0 3.31e-01 94.2% 30.8%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.59 50.0 3.71e-01 98.1% 41.0%
3hdjA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.58 50.0 3.69e-01 98.1% 37.1%
1xzwA01 2.60.40.380 Mainly Beta › Sandwich › Immunoglobulin-like › Purple acid phosphatase-like, N-terminal 0.58 45.0 3.67e-01 84.6% 79.6%
2qm4A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.58 47.0 3.59e-01 98.1% 73.4%
4qxaB00 2.30.29.230 Mainly Beta › Roll › PH-domain like › 0.58 50.0 3.66e-01 98.1% 73.5%
3qkgA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 50.0 3.60e-01 100.0% 38.4%
3zghA00 2.60.40.3400 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 50.0 3.47e-01 100.0% 80.2%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.57 46.0 3.82e-01 96.2% 52.9%
3esiA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.57 45.0 3.66e-01 100.0% 83.9%
4jpqA00 2.60.40.1190 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 49.0 3.28e-01 100.0% 69.4%
1tu1A00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.57 47.0 3.44e-01 94.2% 34.7%
3ligA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.57 49.0 3.48e-01 100.0% 65.7%
1cb8A03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.57 47.0 3.74e-01 94.2% 75.5%
4inaA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.56 48.0 3.28e-01 98.1% 57.4%
1srqA01 3.30.1120.160 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.56 46.0 3.46e-01 96.2% 35.5%
2vtfA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 39.0 2.81e-01 75.0% 88.7%
4mb4A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 44.0 3.93e-01 90.4% 67.1%
1t0pB00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 43.0 3.73e-01 86.5% 72.1%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.56 44.0 3.49e-01 100.0% 41.2%
3fgqA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.55 45.0 3.25e-01 100.0% 75.8%
3fn9C04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 42.0 3.59e-01 86.5% 67.4%
3ecrB03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.55 45.0 3.76e-01 98.1% 54.9%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.54 43.0 3.45e-01 98.1% 82.3%
3ke6B01 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.53 43.0 2.98e-01 100.0% 50.7%
2yd9A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 39.0 3.45e-01 84.6% 72.4%
5oj2B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 40.0 3.39e-01 86.5% 75.0%
2oz4A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 45.0 3.86e-01 98.1% 71.8%
5fgoA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 41.0 3.95e-01 96.2% 75.8%
2e9wB05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 38.0 3.31e-01 84.6% 84.6%
1dr9A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 38.0 3.25e-01 84.6% 74.7%
4l9cA00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.51 39.0 3.06e-01 98.1% 56.7%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3976326 5084.3.1.2 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › IAT_beta 0.74 67.0 4.54e-01 100.0% 37.2%
4113088 5084.1.1.2 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OmpA_membrane 0.72 61.0 4.12e-01 96.2% 52.2%
5791 295.1.1.6 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF1818 0.71 56.0 4.29e-01 100.0% 37.8%
5053966 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.70 57.0 4.82e-01 88.5% 68.2%
857 9.3.1.1 beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Qn_am_d_aII 0.70 61.0 4.85e-01 100.0% 74.1%
5033737 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.68 58.0 3.91e-01 96.2% 26.1%
3410497 5.1.4.164 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_VPS8 0.68 57.0 3.41e-01 100.0% 12.1%
3923143 633.23.1.17 alpha bundles › Bromodomain-like › Claudin › Claudin › DuoxA 0.68 57.0 3.79e-01 100.0% 35.0%
4955671 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.68 46.0 4.03e-01 71.2% 56.2%
5024236 246.2.1.9 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos_2 0.68 57.0 3.96e-01 96.2% 100.0%
3802525 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.66 54.0 3.32e-01 92.3% 23.9%
3785001 246.2.1.9 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos_2 0.66 54.0 3.72e-01 98.1% 99.5%
3275758 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.65 54.0 3.13e-01 96.2% 34.8%
3800450 2003.1.5.13 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.65 54.0 3.26e-01 94.2% 63.2%
3630324 109.4.1.1399 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Tuberin, DUF3384 0.65 46.0 2.51e-01 78.8% 10.0%
3745663 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.64 56.0 3.91e-01 100.0% 67.1%
4359254 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.64 56.0 4.93e-01 98.1% 73.3%
3361739 10.1.1.2 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.63 53.0 3.46e-01 100.0% 57.6%
4646686 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.63 55.0 4.97e-01 98.1% 74.3%
3663046 246.2.1.9 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos_2 0.63 53.0 3.83e-01 100.0% 100.0%
4827588 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.62 53.0 3.74e-01 100.0% 30.5%
4022367 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 52.0 4.34e-01 100.0% 53.0%
87687 246.2.1.9 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos_2 0.62 52.0 3.62e-01 98.1% 99.5%
3549354 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 50.0 2.89e-01 100.0% 8.9%
4972327 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.61 49.0 4.12e-01 90.4% 87.4%
3901826 5.1.4.78 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › TFIIIC_delta 0.61 50.0 2.89e-01 100.0% 9.2%
4336488 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.61 51.0 4.70e-01 96.2% 72.9%
3243889 9.1.1.12 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › THAP4_heme-bd 0.60 52.0 3.60e-01 100.0% 31.9%
3816749 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.60 51.0 3.19e-01 100.0% 24.4%
4960428 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.60 51.0 3.32e-01 100.0% 23.2%
None 0.59 48.0 2.87e-01 100.0% 16.0%
5027014 246.2.1.9 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos_2 0.59 51.0 3.52e-01 100.0% 97.3%
3338395 222.1.1.1 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydratas 0.59 47.0 3.63e-01 96.2% 87.1%
3367314 5.1.4.510 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FBA_1 0.59 47.0 3.06e-01 96.2% 28.8%
3896291 11.1.1.96 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set 0.58 45.0 3.67e-01 84.6% 68.4%
3988703 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 45.0 4.29e-01 96.2% 75.4%
3714612 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.57 48.0 3.43e-01 96.2% 32.1%
4157358 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.57 48.0 4.30e-01 98.1% 69.2%
3286230 222.1.1.0 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.57 49.0 4.09e-01 100.0% 84.2%
3649484 220.1.1.27 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RBD 0.57 47.0 3.45e-01 98.1% 81.9%
3390946 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 42.0 3.33e-01 82.7% 96.5%
3592221 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 45.0 3.70e-01 100.0% 58.5%
3658278 5.1.3.142 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.56 47.0 2.94e-01 100.0% 20.6%
3267754 719.1.1.2 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XLF 0.55 44.0 3.46e-01 94.2% 87.2%
3728206 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.54 45.0 2.83e-01 100.0% 21.7%
3184125 223.3.1.0 a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins 0.54 45.0 3.57e-01 100.0% 88.3%
3195138 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.54 44.0 2.72e-01 100.0% 26.0%
3295586 881.1.1.1 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.54 46.0 3.31e-01 100.0% 38.2%
3323226 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.54 46.0 3.40e-01 100.0% 42.0%
3898332 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 40.0 3.34e-01 84.6% 85.0%
3601612 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.53 44.0 3.32e-01 100.0% 36.7%
3275868 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.53 39.0 3.56e-01 98.1% 57.5%
4825040 12.3.1.13 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C 0.53 40.0 3.15e-01 100.0% 34.5%
None 0.50 39.0 2.53e-01 100.0% 25.4%