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JQ867099.1__AFM54817.1__P2559S_39__00039

Bact-Vir

JQ867099.1__AFM54817.1__P2559S_39__00039

Identity

Accession:
JQ867099 ↗
Kingdom:
phage

Quality

66.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Croceibacter_phage_P2559S

TaxID: 1176422

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 31-80
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1m1gB03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.79 60.0 5.57e-01 100.0% 65.1%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.73 56.0 5.10e-01 100.0% 62.7%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 53.0 5.03e-01 100.0% 66.1%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 53.0 4.89e-01 100.0% 66.2%
1zuuA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 54.0 5.29e-01 100.0% 85.7%
7oc3A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 57.0 4.66e-01 100.0% 54.3%
2oc3A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.64 50.0 3.13e-01 88.0% 33.0%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 44.0 4.19e-01 96.0% 63.9%
4ghnA02 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.61 53.0 4.23e-01 100.0% 78.1%
2o07A01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.60 50.0 4.81e-01 100.0% 83.1%
4q0yA00 2.60.40.4400 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 53.0 3.86e-01 98.0% 68.7%
3nqzA01 3.10.450.490 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 47.0 3.94e-01 90.0% 71.4%
6zhhA01 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.60 48.0 3.30e-01 90.0% 41.1%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.59 52.0 4.88e-01 100.0% 82.5%
1v43A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 47.0 4.36e-01 92.0% 68.8%
3qkgA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 43.0 3.10e-01 84.0% 53.0%
1ebdA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 48.0 3.77e-01 100.0% 94.2%
1vw3B01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 44.0 3.67e-01 86.0% 46.2%
4o38A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 40.0 3.41e-01 98.0% 40.6%
4m52A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 49.0 3.76e-01 100.0% 94.2%
1vw4M01 2.30.30.790 Mainly Beta › Roll › SH3 type barrels. › 0.57 46.0 3.57e-01 100.0% 38.6%
2i6vA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.57 48.0 4.08e-01 100.0% 89.7%
3wkmB01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.56 47.0 3.96e-01 100.0% 72.3%
1aqcB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 47.0 3.66e-01 100.0% 45.9%
5zg8A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 45.0 3.60e-01 98.0% 44.1%
1kyfA01 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.56 41.0 3.25e-01 90.0% 90.3%
4wfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 49.0 3.43e-01 100.0% 32.0%
2cmgA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.56 43.0 4.34e-01 98.0% 92.2%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.55 46.0 3.93e-01 100.0% 74.4%
5f3yA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 48.0 4.19e-01 100.0% 74.0%
5bukB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 47.0 2.79e-01 100.0% 38.7%
1iy9A02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.55 43.0 4.30e-01 100.0% 92.3%
1je0C00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.55 42.0 2.81e-01 86.0% 19.4%
3ossC00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.54 44.0 4.05e-01 90.0% 92.3%
2gy5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 41.0 3.48e-01 92.0% 90.9%
1ddvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 40.0 3.38e-01 90.0% 74.0%
1r9cA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.54 40.0 3.02e-01 94.0% 32.0%
1bf3A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 45.0 3.00e-01 100.0% 52.1%
5ajqA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 39.0 3.41e-01 88.0% 48.8%
4gafB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 39.0 3.24e-01 84.0% 83.0%
1l0wA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 45.0 3.59e-01 100.0% 46.2%
3n8hA02 3.30.1300.10 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain 0.52 41.0 3.63e-01 90.0% 68.4%
1bbuA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 42.0 3.17e-01 98.0% 42.9%
1h4rA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 40.0 3.46e-01 100.0% 51.6%
1fmbA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.51 44.0 3.51e-01 100.0% 59.6%
2i1yA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.50 37.0 2.42e-01 88.0% 35.9%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4093836 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 56.0 5.35e-01 100.0% 70.0%
3416068 4.1.1.187 ↗ beta barrels › SH3 › SH3 › SH3 › DIRP 0.73 57.0 4.04e-01 100.0% 28.4%
3540253 4.1.1.78 ↗ beta barrels › SH3 › SH3 › SH3 › TTD 0.73 64.0 5.17e-01 100.0% 57.9%
3963505 2.1.1.85 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecJ_OB 0.71 50.0 3.87e-01 74.0% 37.1%
3898370 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.69 59.0 5.65e-01 100.0% 82.8%
5029166 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 59.0 5.24e-01 100.0% 82.4%
5051313 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 52.0 4.85e-01 100.0% 67.7%
3568329 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 55.0 5.23e-01 100.0% 78.3%
3696503 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.67 46.0 2.79e-01 100.0% 10.9%
424 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.66 47.0 4.24e-01 76.0% 59.2%
4674170 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.66 57.0 4.33e-01 100.0% 43.3%
160497 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.65 46.0 4.17e-01 76.0% 54.9%
4304764 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.65 49.0 3.75e-01 92.0% 35.3%
4250402 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 50.0 5.20e-01 100.0% 100.0%
4213956 2.4.1.3 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2,OB_MalK 0.65 48.0 3.65e-01 92.0% 32.8%
3481726 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 55.0 5.27e-01 100.0% 83.3%
5017478 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.64 46.0 3.95e-01 92.0% 45.9%
4271291 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 45.0 4.06e-01 76.0% 90.0%
3954938 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 54.0 4.99e-01 100.0% 75.4%
3887624 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.63 43.0 3.05e-01 72.0% 25.0%
4966131 4.1.3.1 ↗ beta barrels › SH3 › SH3 › Calcium-binding protein CcbP › Calci_bind_CcbP 0.63 55.0 4.29e-01 100.0% 46.4%
4031803 2.4.1.10 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE,OB_MalK 0.63 51.0 3.79e-01 92.0% 35.4%
4095892 2.4.1.3 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2,OB_MalK 0.62 53.0 3.88e-01 98.0% 62.9%
4190130 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.62 45.0 3.76e-01 92.0% 43.3%
4550958 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.62 45.0 3.51e-01 96.0% 35.4%
3790784 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.61 43.0 2.81e-01 100.0% 15.1%
3924633 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.61 49.0 3.15e-01 90.0% 38.0%
3585214 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 43.0 3.63e-01 100.0% 41.0%
3931122 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 51.0 4.24e-01 100.0% 58.9%
4051997 2.4.1.3 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2,OB_MalK 0.60 46.0 3.54e-01 92.0% 35.8%
3964608 220.1.1.104 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Cpta_toxin 0.60 43.0 4.02e-01 100.0% 58.6%
3583473 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.60 45.0 2.85e-01 88.0% 29.5%
4994295 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.60 47.0 3.56e-01 90.0% 38.3%
3967986 4.7.1.2 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › ROF 0.59 51.0 4.43e-01 100.0% 91.3%
4063634 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.59 49.0 3.81e-01 100.0% 41.9%
5043053 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 41.0 3.33e-01 74.0% 39.0%
4202799 2.4.1.3 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2,OB_MalK 0.58 46.0 3.48e-01 88.0% 38.4%
2388493 4.8.1.2 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.58 39.0 3.76e-01 94.0% 57.8%
4618633 4.26.1.1 ↗ beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › Cren7 0.58 50.0 4.78e-01 100.0% 88.1%
3952031 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.58 49.0 3.77e-01 100.0% 91.2%
5046464 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.58 45.0 3.52e-01 94.0% 38.3%
4269457 330.6.1.1 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.58 44.0 3.31e-01 86.0% 71.6%
4965423 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.58 44.0 3.40e-01 86.0% 37.6%
5077089 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 46.0 4.20e-01 92.0% 84.3%
5013202 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.57 45.0 3.51e-01 90.0% 39.0%
4961575 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.57 45.0 3.41e-01 88.0% 36.8%
4025190 3256.1.1.0 ↗ a+b two layers › DUF2233 N-terminal domain › DUF2233 N-terminal domain › DUF2233 N-terminal domain 0.57 42.0 4.17e-01 100.0% 76.4%
4015423 206.1.1.70 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 0.57 39.0 2.46e-01 78.0% 19.4%
3845542 220.1.1.38 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N 0.56 47.0 3.88e-01 100.0% 78.0%
3944244 2.4.1.3 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2,OB_MalK 0.56 46.0 3.39e-01 92.0% 34.1%
3942998 4056.1.1.0 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.56 44.0 4.15e-01 100.0% 81.4%
3439448 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.56 39.0 2.55e-01 100.0% 15.6%
3923480 206.1.1.20 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.56 37.0 2.41e-01 72.0% 13.7%
5004623 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 42.0 3.60e-01 90.0% 71.6%
5052369 169.1.1.1 ↗ alpha complex topology › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › AFOR_C 0.56 44.0 2.66e-01 92.0% 18.5%
3387114 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.55 46.0 3.76e-01 94.0% 54.7%
3675857 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.55 46.0 3.22e-01 100.0% 40.0%
3496857 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 41.0 3.48e-01 92.0% 77.1%
3574976 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.55 38.0 3.73e-01 100.0% 67.3%
3530891 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 46.0 3.66e-01 100.0% 49.5%
3387994 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.54 45.0 3.87e-01 94.0% 60.0%
4932845 169.1.1.1 ↗ alpha complex topology › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › AFOR_C 0.54 43.0 2.60e-01 94.0% 18.8%
3416672 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 43.0 3.62e-01 100.0% 51.0%
4514268 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.54 44.0 3.74e-01 96.0% 57.3%
3867672 2.1.1.22 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › HIN 0.53 43.0 3.97e-01 98.0% 67.6%
3405538 219.1.1.111 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core, Rad4 0.53 42.0 2.62e-01 86.0% 19.3%
5035858 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 40.0 3.10e-01 92.0% 43.7%
3723425 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 41.0 2.62e-01 100.0% 18.5%
3249366 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 40.0 3.52e-01 90.0% 93.8%
3978756 3197.1.1.1 ↗ a+b two layers › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 › PipB2_N 0.50 38.0 3.12e-01 94.0% 74.2%