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JQ867100.1__AFM54849.1__P12026_03__00003
Bact-VirJQ867100.1__AFM54849.1__P12026_03__00003
Identity
- Accession:
- JQ867100 ↗
- Kingdom:
- phage
Quality
80.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-47
Domain cluster:
representative
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3w6kC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 43.0 | 3.44e-01 | 100.0% | 34.5% |
| 1dekA02 | 1.10.238.70 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › | 0.62 | 55.0 | 3.96e-01 | 100.0% | 48.4% |
| 3p9aF00 | 1.10.132.80 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › | 0.60 | 38.0 | 2.74e-01 | 88.9% | 21.6% |
| 1rtqA00 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.58 | 51.0 | 3.07e-01 | 100.0% | 46.7% |
| 2jsxA01 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.57 | 34.0 | 2.89e-01 | 88.9% | 35.2% |
| 3caiA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.57 | 47.0 | 3.42e-01 | 97.8% | 66.2% |
| 3g9qA02 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.56 | 46.0 | 3.28e-01 | 97.8% | 87.7% |
| 6f35A01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.56 | 47.0 | 3.24e-01 | 100.0% | 50.3% |
| 3dydA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.55 | 38.0 | 2.68e-01 | 97.8% | 23.4% |
| 3l0gB01 | 3.90.1170.20 | Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Quinolinate phosphoribosyl transferase, N-terminal domain | 0.55 | 45.0 | 3.45e-01 | 100.0% | 82.2% |
| 4lw2A01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.55 | 45.0 | 3.33e-01 | 97.8% | 62.4% |
| 2p3nA01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.55 | 43.0 | 3.20e-01 | 100.0% | 31.9% |
| 1u02A02 | 3.30.70.1020 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trehalose-6-phosphate phosphatase related protein; domain 2 | 0.54 | 45.0 | 3.92e-01 | 100.0% | 81.6% |
| 2x4lA02 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.54 | 44.0 | 3.16e-01 | 95.6% | 91.9% |
| 2v50D07 | 3.30.70.1440 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain | 0.54 | 45.0 | 3.65e-01 | 100.0% | 67.4% |
| 6mfxA02 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.54 | 43.0 | 3.08e-01 | 93.3% | 80.0% |
| 4bgpA01 | 1.20.142.20 | Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › | 0.54 | 45.0 | 3.34e-01 | 97.8% | 59.1% |
| 8dgfB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 44.0 | 2.90e-01 | 91.1% | 73.8% |
| 1mdoA02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.53 | 44.0 | 3.33e-01 | 100.0% | 89.7% |
| 2gffA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 46.0 | 3.61e-01 | 100.0% | 64.6% |
| 4iduB01 | 1.20.142.20 | Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › | 0.53 | 43.0 | 3.22e-01 | 97.8% | 60.6% |
| 5vyeA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.52 | 43.0 | 3.38e-01 | 95.6% | 71.6% |
| 2kjwA00 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.52 | 43.0 | 3.51e-01 | 100.0% | 64.6% |
| 1lc5A01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.52 | 41.0 | 3.14e-01 | 95.6% | 64.0% |
| 6torA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.52 | 44.0 | 3.17e-01 | 100.0% | 61.8% |
| 2z99A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 35.0 | 2.93e-01 | 88.9% | 36.8% |
| 3a8uX01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.52 | 43.0 | 3.02e-01 | 100.0% | 31.2% |
| 4ritA01 | 3.90.1150.170 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.51 | 37.0 | 2.42e-01 | 80.0% | 23.1% |
| 2c81A02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.51 | 43.0 | 3.09e-01 | 100.0% | 83.0% |
| 5adxJ01 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.51 | 46.0 | 3.61e-01 | 100.0% | 100.0% |
| 2pmlX01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 37.0 | 2.79e-01 | 82.2% | 93.5% |
| 1s12A00 | 3.30.70.1490 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp | 0.51 | 43.0 | 3.44e-01 | 100.0% | 53.2% |
| 3bb5A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 40.0 | 3.13e-01 | 91.1% | 66.0% |
| 4uhiA01 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.50 | 44.0 | 2.54e-01 | 100.0% | 11.0% |
ECOD (53)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5035739 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.67 | 42.0 | 2.44e-01 | 80.0% | 7.0% |
| 3586911 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.64 | 43.0 | 3.38e-01 | 100.0% | 32.6% |
| 3969345 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.64 | 44.0 | 2.85e-01 | 100.0% | 15.0% |
| 5012011 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.61 | 51.0 | 3.75e-01 | 95.6% | 56.0% |
| 3419597 | 101.1.1.121 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 | 0.60 | 50.0 | 3.64e-01 | 100.0% | 34.4% |
| 3724634 | 243.1.1.63 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF6841 | 0.60 | 51.0 | 3.66e-01 | 100.0% | 56.4% |
| 3289451 | 243.1.1.63 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF6841 | 0.59 | 42.0 | 3.00e-01 | 77.8% | 61.4% |
| 3958915 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.59 | 51.0 | 4.29e-01 | 100.0% | 67.5% |
| 1901910 | 7524.1.1.1 ↗ | a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh | 0.59 | 50.0 | 3.16e-01 | 100.0% | 65.6% |
| 3980132 | 823.1.1.1 ↗ | a+b two layers › Head-to-tail joining protein W, gpW › Head-to-tail joining protein W, gpW › Head-to-tail joining protein W, gpW › gpW | 0.58 | 38.0 | 3.54e-01 | 100.0% | 54.5% |
| 4974781 | 7577.1.1.6 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › DegT_DnrJ_EryC1 | 0.58 | 48.0 | 2.92e-01 | 100.0% | 65.1% |
| 3466238 | 206.1.1.14 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › ABC1 | 0.58 | 47.0 | 2.67e-01 | 100.0% | 8.9% |
| 4938780 | 1036.1.1.1 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 | 0.58 | 50.0 | 3.94e-01 | 100.0% | 54.7% |
| 4027433 | 4357.1.1.0 ↗ | beta barrels › WWE domain › WWE domain › WWE domain | 0.57 | 46.0 | 4.48e-01 | 100.0% | 84.0% |
| 4132924 | 371.1.1.1 ↗ | few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholip_A2_1 | 0.57 | 47.0 | 3.59e-01 | 100.0% | 44.4% |
| 5082662 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.57 | 48.0 | 3.16e-01 | 100.0% | 50.0% |
| 5028479 | 7577.1.1.6 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › DegT_DnrJ_EryC1 | 0.57 | 49.0 | 2.92e-01 | 100.0% | 41.6% |
| 5081953 | 3016.1.1.6 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › DegT_DnrJ_EryC1 | 0.56 | 49.0 | 3.55e-01 | 100.0% | 89.1% |
| 2076387 | 2006.1.1.3 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Trehalose_PPase | 0.56 | 39.0 | 2.72e-01 | 93.3% | 21.8% |
| 3699555 | 831.1.1.1 ↗ | a+b two layers › NSFL1 (p97 ATPase) cofactor p47, SEP domain › NSFL1 (p97 ATPase) cofactor p47, SEP domain › NSFL1 (p97 ATPase) cofactor p47, SEP domain › SEP | 0.56 | 44.0 | 3.50e-01 | 88.9% | 89.5% |
| 4943544 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.56 | 49.0 | 4.26e-01 | 100.0% | 72.9% |
| 4348123 | 3236.1.1.16 ↗ | alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Asp-Al_Ex | 0.56 | 44.0 | 2.72e-01 | 97.8% | 67.8% |
| 3943718 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 37.0 | 2.58e-01 | 97.8% | 19.4% |
| 3289475 | 3978.1.1.2 ↗ | alpha complex topology › Integral membrane Acyl-CoA desaturase › Integral membrane Acyl-CoA desaturase › Integral membrane Acyl-CoA desaturase › FA_hydroxylase | 0.55 | 45.0 | 2.97e-01 | 91.1% | 59.5% |
| 4258748 | 604.39.1.5 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › ECF_trnsprt | 0.55 | 45.0 | 3.03e-01 | 100.0% | 24.8% |
| 3310256 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.54 | 47.0 | 3.80e-01 | 100.0% | 57.8% |
| 3797423 | 3226.1.1.0 ↗ | alpha complex topology › Uracil Transporter UraA › Uracil Transporter UraA › Uracil Transporter UraA | 0.54 | 43.0 | 2.57e-01 | 100.0% | 50.3% |
| 4679172 | 331.2.1.1 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV | 0.54 | 47.0 | 3.90e-01 | 100.0% | 66.3% |
| 5029389 | 601.17.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Group V grass pollen allergen › Group V grass pollen allergen | 0.54 | 46.0 | 3.30e-01 | 100.0% | 31.0% |
| 4995244 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.53 | 41.0 | 3.05e-01 | 82.2% | 36.4% |
| 4515869 | 331.2.1.1 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV | 0.53 | 46.0 | 3.74e-01 | 100.0% | 64.0% |
| 3972072 | 2003.1.3.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO | 0.53 | 44.0 | 2.80e-01 | 100.0% | 51.9% |
| 4029551 | 10.12.1.52 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_8 | 0.53 | 41.0 | 2.54e-01 | 93.3% | 78.6% |
| None | — | 0.53 | 44.0 | 2.79e-01 | 100.0% | 53.7% | |
| 3832382 | 5069.1.3.60 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › OST3_OST6 | 0.53 | 44.0 | 3.33e-01 | 97.8% | 50.0% |
| 3993677 | 823.1.1.0 ↗ | a+b two layers › Head-to-tail joining protein W, gpW › Head-to-tail joining protein W, gpW › Head-to-tail joining protein W, gpW | 0.53 | 39.0 | 3.30e-01 | 100.0% | 50.0% |
| 5039662 | 304.48.1.112 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › SatD | 0.53 | 41.0 | 2.86e-01 | 100.0% | 28.5% |
| 3590970 | 267.1.1.3 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase | 0.53 | 41.0 | 2.93e-01 | 100.0% | 24.7% |
| 5020988 | 267.1.1.3 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase | 0.53 | 44.0 | 2.89e-01 | 95.6% | 81.0% |
| 3717172 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 43.0 | 2.40e-01 | 100.0% | 11.2% |
| 2028025 | 1070.2.1.1 ↗ | alpha complex topology › CRISPR-associated endonuclease first helical domain › CRISPR-associated endonuclease C2c1 first helical domain › CRISPR-associated endonuclease C2c1 first helical domain › C2c1_helical_1st | 0.52 | 41.0 | 2.54e-01 | 100.0% | 35.9% |
| 3704248 | 7516.1.1.88 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › TAGT | 0.52 | 44.0 | 2.72e-01 | 100.0% | 65.2% |
| 4960340 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.52 | 43.0 | 2.82e-01 | 100.0% | 21.0% |
| 5062246 | 5054.1.1.2 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans | 0.52 | 45.0 | 3.48e-01 | 100.0% | 62.9% |
| 3936863 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 39.0 | 2.43e-01 | 97.8% | 15.1% |
| None | — | 0.51 | 36.0 | 2.35e-01 | 75.6% | 44.9% | |
| 3960425 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.51 | 43.0 | 3.19e-01 | 100.0% | 65.4% |
| 4015673 | 267.1.1.0 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain | 0.51 | 43.0 | 2.86e-01 | 100.0% | 80.5% |
| 3516325 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 43.0 | 3.65e-01 | 100.0% | 66.3% |
| 3922015 | 220.1.1.36 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 | 0.50 | 41.0 | 2.90e-01 | 88.9% | 80.0% |
| 4001272 | 3561.1.1.0 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 | 0.50 | 43.0 | 2.43e-01 | 93.3% | 17.2% |
| 3980816 | 3261.1.1.0 ↗ | a+b two layers › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb | 0.50 | 44.0 | 3.74e-01 | 100.0% | 60.0% |
| 1151815 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.50 | 40.0 | 2.93e-01 | 97.8% | 83.3% |