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JQ867100.1__AFM54866.1__P12026_20__00020

Bact-Vir

JQ867100.1__AFM54866.1__P12026_20__00020

Identity

Accession:
JQ867100 ↗
Kingdom:
phage

Quality

86.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Marinomonas_phage_P12026

TaxID: 1176423

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-85
PDB
Domain cluster: rep: KF692088.2__AHB31633.1__ArV2_gp23__00023__D17-96
D2 high residues 102-168
PDB
Domain cluster: rep: MT740307.1__QNR53876.1__phiK7A1_088__00086__D24-103
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1goiB03 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.79 54.0 6.10e-01 76.1% 92.2%
4oj5A02 2.10.10.80 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.69 49.0 4.83e-01 74.6% 83.1%
7uzqK01 1.10.3430.10 Mainly Alpha › Orthogonal Bundle › Ammonium transporter fold › Ammonium transporter AmtB like domains 0.56 47.0 2.96e-01 94.0% 28.3%
4qucA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 27.0 2.90e-01 77.6% 58.9%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5026481 64.3.1.3 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12_2 0.88 55.0 6.34e-01 70.1% 86.0%
4233290 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.86 58.0 6.71e-01 70.1% 96.0%
3972100 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.85 56.0 5.75e-01 70.1% 70.8%
3971347 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.84 57.0 6.14e-01 70.1% 86.2%
4110715 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.83 56.0 6.01e-01 70.1% 84.7%
4009007 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.80 54.0 6.25e-01 70.1% 94.0%
2389402 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.77 53.0 5.92e-01 82.1% 88.9%
2736862 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.66 47.0 4.74e-01 76.1% 83.8%
5056597 243.6.1.0 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.66 35.0 3.59e-01 76.1% 52.3%
2736861 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.66 44.0 4.46e-01 70.1% 74.6%
3934136 304.31.1.0 ↗ a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase 0.56 44.0 3.25e-01 86.6% 66.9%
3578274 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.54 49.0 3.09e-01 100.0% 84.3%
4351418 270.1.1.2 ↗ beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Formyl_trans_C 0.53 39.0 3.43e-01 95.5% 53.0%
4187601 270.1.1.2 ↗ beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Formyl_trans_C 0.52 36.0 3.18e-01 73.1% 78.1%
3713527 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.52 46.0 2.99e-01 100.0% 46.0%
2860236 1042.1.1.1 ↗ a+b complex topology › S2 subunit of coronavirus spike glycoprotein › S2 subunit of coronavirus spike glycoprotein › S2 subunit of coronavirus spike glycoprotein › CoV_S2 0.51 44.0 2.74e-01 100.0% 44.2%
D3 high residues 197-302
PDB
Domain cluster: rep: IMGVR_UViG_3300003604_000018-3300003604-JGI26464J51801_10016209__D29-123
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yu0A02 2.80.20.10 Mainly Beta › Trefoil › Tail fiber receptor-binding protein › Tail fiber receptor-binding protein 0.94 90.0 7.91e-01 100.0% 84.2%
2xc8A00 2.60.40.2980 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 50.0 4.83e-01 94.3% 88.4%
1yloE02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.51 30.0 3.31e-01 79.2% 72.6%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1107991 4166.1.1.4 ↗ beta sandwiches › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like › mtd_2nd 0.93 83.0 8.04e-01 92.5% 98.3%
5038875 4166.1.1.0 ↗ beta sandwiches › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like 0.76 66.0 6.44e-01 93.4% 86.1%
5041029 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.58 32.0 3.60e-01 95.3% 68.8%
3945811 70.4.1.7 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › XM1_gp53_minor_capsid 0.58 34.0 4.13e-01 89.6% 100.0%
3285669 371.1.1.5 ↗ few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › DUF1353 0.56 41.0 3.64e-01 76.4% 90.3%
3273347 11.1.1.843 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 0.53 41.0 3.67e-01 81.1% 82.8%
D4 high residues 313-493
PDB
Domain cluster: rep: IMGVR_UViG_3300038974_000877-3300038974-Ga0416721_000556_5288_6388__D166-273_308-366
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yu0A03 3.90.1580.10 Alpha Beta › Alpha-Beta Complex › paralog of FGE (formylglycine-generating enzyme) › paralog of FGE (formylglycine-generating enzyme) 0.96 88.0 8.87e-01 93.4% 100.0%
2pf5D00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.76 41.0 5.63e-01 98.3% 100.0%
3m9zA00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.70 43.0 5.22e-01 99.4% 91.1%
1y1fX00 3.90.1580.10 Alpha Beta › Alpha-Beta Complex › paralog of FGE (formylglycine-generating enzyme) › paralog of FGE (formylglycine-generating enzyme) 0.69 66.0 5.58e-01 99.4% 85.7%
2y3cA00 3.90.1580.10 Alpha Beta › Alpha-Beta Complex › paralog of FGE (formylglycine-generating enzyme) › paralog of FGE (formylglycine-generating enzyme) 0.68 65.0 5.50e-01 98.9% 84.5%
1wxqA03 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.58 22.0 3.33e-01 96.7% 81.9%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
7356 209.1.2.0 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › Sulfatase-modifying factor-like 0.96 94.0 8.84e-01 100.0% 91.0%
2080140 209.1.2.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › Sulfatase-modifying factor-like › FGE-sulfatase 0.72 69.0 5.23e-01 99.4% 82.7%
4936908 209.1.2.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › Sulfatase-modifying factor-like › FGE-sulfatase 0.72 68.0 5.85e-01 98.3% 88.3%
1948554 209.1.2.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › Sulfatase-modifying factor-like › FGE-sulfatase 0.71 68.0 5.81e-01 99.4% 86.8%
5039704 209.1.2.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › Sulfatase-modifying factor-like › FGE-sulfatase 0.70 66.0 5.52e-01 98.3% 78.9%
5018422 209.1.2.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › Sulfatase-modifying factor-like › FGE-sulfatase 0.70 67.0 5.90e-01 100.0% 78.8%
5060315 209.1.2.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › Sulfatase-modifying factor-like › FGE-sulfatase 0.69 67.0 6.10e-01 99.4% 80.9%
4871690 209.1.2.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › Sulfatase-modifying factor-like › FGE-sulfatase 0.69 64.0 5.39e-01 97.2% 81.9%
4653754 209.1.2.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › Sulfatase-modifying factor-like › FGE-sulfatase 0.69 66.0 5.79e-01 99.4% 82.3%
2507386 209.1.2.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › Sulfatase-modifying factor-like › FGE-sulfatase 0.69 65.0 5.35e-01 98.9% 82.2%
4565760 209.1.2.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › Sulfatase-modifying factor-like › FGE-sulfatase 0.69 65.0 5.74e-01 98.9% 90.0%
1151599 209.1.2.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › Sulfatase-modifying factor-like › FGE-sulfatase 0.68 65.0 5.50e-01 98.9% 84.5%
2464389 209.1.2.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › Sulfatase-modifying factor-like › FGE-sulfatase 0.64 61.0 5.29e-01 99.4% 79.1%