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JQ965645.1__AFL46959.1__SSU5_032__00032

Bact-Vir

JQ965645.1__AFL46959.1__SSU5_032__00032

Identity

Accession:
JQ965645 ↗
Kingdom:
phage

Quality

90.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-94
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4kcaA02 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.73 42.0 2.70e-01 100.0% 12.7%
3lygA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.70 40.0 3.59e-01 100.0% 40.8%
3f6gA02 3.30.160.340 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.62 39.0 4.47e-01 97.7% 87.3%
4xrtA02 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.62 36.0 2.93e-01 100.0% 31.2%
1vwxr00 3.30.390.110 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.60 38.0 3.39e-01 92.0% 44.8%
3q90B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 35.0 3.07e-01 100.0% 38.5%
1ar0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 36.0 3.23e-01 100.0% 42.4%
3kztA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 36.0 3.16e-01 98.9% 41.7%
4xrtA01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 33.0 2.88e-01 100.0% 34.5%
1a1aB00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.56 42.0 4.06e-01 94.3% 68.6%
3n8bA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 33.0 3.54e-01 90.8% 66.7%
6n8pA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 44.0 2.94e-01 94.3% 21.2%
1uliB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 36.0 2.88e-01 100.0% 33.3%
1mg2A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 46.0 3.02e-01 95.4% 22.5%
2carB00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.52 44.0 3.48e-01 95.4% 93.8%
3cjlA00 3.10.20.850 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Protein of unknown function DUF3861 0.52 33.0 3.39e-01 73.6% 63.6%
1y7bA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 45.0 3.10e-01 100.0% 93.8%
3akhA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 44.0 3.02e-01 94.3% 29.4%
8gq6A01 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.51 40.0 2.83e-01 95.4% 25.3%
1eurA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.51 44.0 2.91e-01 95.4% 30.2%
1gydB00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 43.0 2.98e-01 94.3% 28.6%
1yeyA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 42.0 3.81e-01 93.1% 96.0%
3fvzA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.51 42.0 2.87e-01 93.1% 24.3%
1st8A01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 45.0 3.02e-01 98.9% 99.1%
3bm4A00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.50 40.0 3.13e-01 88.5% 73.1%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4571073 243.1.1.66 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TcaA_5th 0.75 40.0 3.77e-01 100.0% 43.8%
4304407 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.68 40.0 3.43e-01 92.0% 38.5%
4023434 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 40.0 3.39e-01 92.0% 36.6%
4981234 896.1.1.0 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.65 38.0 4.36e-01 89.7% 78.5%
4010189 243.1.1.21 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF3828 0.64 39.0 3.33e-01 100.0% 38.5%
3639482 220.1.1.211 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7612 0.64 39.0 3.30e-01 90.8% 37.1%
4507316 220.1.1.20 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.63 39.0 3.58e-01 90.8% 47.0%
3276532 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.63 40.0 2.75e-01 100.0% 19.0%
146266 295.1.1.8 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF3276 0.62 37.0 3.77e-01 100.0% 59.5%
3658323 284.1.2.1 a+b two layers › FKBP-like › FKBP-like › Conserved carboxy-terminal domain of oxidative-stress-responsive kinase 1-like kinases › OSR1_C 0.62 39.0 3.73e-01 97.7% 52.4%
3334339 2484.1.1.157 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 0.60 44.0 3.12e-01 100.0% 26.3%
137975 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.58 36.0 3.16e-01 98.9% 41.7%
3183690 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 35.0 2.94e-01 85.1% 35.3%
5039153 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 48.0 3.06e-01 95.4% 19.9%
3179350 5.1.3.134 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR, BNR_2 0.56 43.0 2.78e-01 81.6% 92.1%
3515384 331.3.1.5 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.56 33.0 2.81e-01 100.0% 32.7%
3798282 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.56 34.0 3.07e-01 100.0% 41.6%
4884460 5.1.3.35 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Neuraminidase 0.55 46.0 3.50e-01 96.6% 50.4%
5079397 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.55 37.0 3.79e-01 98.9% 71.8%
3443786 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.54 37.0 3.93e-01 97.7% 82.7%
3999127 109.21.1.8 alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › WD40 0.53 42.0 2.48e-01 96.6% 10.4%
4158830 220.1.1.19 beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.53 33.0 2.91e-01 89.7% 40.8%
3180376 109.3.1.11 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_5 0.52 46.0 2.99e-01 100.0% 26.0%
3199294 206.1.1.74 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr 0.52 42.0 2.80e-01 93.1% 49.9%
3830041 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.51 34.0 3.01e-01 100.0% 44.6%
4433752 5.1.3.35 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Neuraminidase 0.51 43.0 3.09e-01 95.4% 38.5%
3518958 5.1.4.223 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RIC1_2nd 0.51 43.0 2.52e-01 96.6% 58.6%
3470391 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.51 36.0 2.54e-01 78.2% 38.6%
3455003 9.1.1.11 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_2 0.50 44.0 3.40e-01 98.9% 93.0%
D2 high residues 96-231
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2pr1A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.75 48.0 4.64e-01 100.0% 57.9%
3s6gA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.74 42.0 4.08e-01 100.0% 50.7%
2fe7B00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.72 43.0 3.99e-01 95.6% 48.2%
3r1kA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.71 41.0 4.23e-01 99.3% 58.6%
3i3gA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.70 41.0 4.02e-01 95.6% 53.8%
6rftA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.70 40.0 4.08e-01 99.3% 57.3%
3i9sA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.69 41.0 3.90e-01 95.6% 50.3%
2b3uB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.66 40.0 3.81e-01 95.6% 50.6%
2pt7G02 3.30.1370.180 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.65 32.0 4.42e-01 80.1% 95.5%
2dxqA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.64 39.0 3.83e-01 95.6% 55.1%
3jvnA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.64 32.0 3.35e-01 98.5% 52.5%
2qecA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.61 44.0 3.98e-01 100.0% 55.6%
3dnsA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.60 41.0 4.22e-01 100.0% 72.5%
6x6aA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.59 53.0 4.20e-01 98.5% 85.1%
8jj7A01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.57 51.0 3.98e-01 99.3% 85.0%
5cmlA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.57 51.0 4.27e-01 99.3% 92.5%
3iplA02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.56 26.0 3.21e-01 95.6% 68.7%
3dorA03 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.52 46.0 3.81e-01 100.0% 89.0%
3tcaA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 30.0 3.60e-01 98.5% 86.7%
4isbB02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.50 31.0 3.41e-01 98.5% 76.6%
4gs5A02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.50 29.0 3.23e-01 96.3% 72.4%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3983339 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.75 69.0 5.96e-01 100.0% 65.5%
4461330 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.75 48.0 4.55e-01 100.0% 55.0%
4427616 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.74 47.0 4.60e-01 100.0% 58.7%
4109136 213.1.1.27 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_7 0.74 47.0 4.59e-01 100.0% 59.3%
3587151 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.70 42.0 4.46e-01 95.6% 67.5%
5075162 213.1.1.29 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_9 0.69 43.0 4.12e-01 100.0% 54.2%
4457355 213.1.1.29 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_9 0.69 40.0 4.03e-01 94.1% 56.3%
2515291 213.1.1.29 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_9 0.68 40.0 4.01e-01 93.4% 56.5%
3921742 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.67 46.0 3.77e-01 100.0% 40.9%
3963030 213.1.1.29 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_9 0.66 39.0 3.69e-01 91.9% 47.9%
5002465 213.1.1.27 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_7 0.63 44.0 3.90e-01 100.0% 49.7%
3738698 213.1.1.6 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › ODC_AZ 0.62 40.0 4.29e-01 100.0% 74.2%
5017773 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.62 43.0 3.82e-01 100.0% 50.3%
4152187 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.61 39.0 4.24e-01 98.5% 76.5%
4020677 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.61 43.0 4.38e-01 100.0% 74.1%
3362578 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.60 45.0 4.04e-01 96.3% 57.8%
3184138 213.1.1.6 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › ODC_AZ 0.57 42.0 4.32e-01 100.0% 80.0%
3408059 2496.1.1.2 a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like › STAS 0.54 44.0 4.51e-01 100.0% 87.3%
3658965 224.1.1.5 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › DUF7904 0.54 28.0 3.03e-01 96.3% 56.4%
4934962 327.18.1.0 a+b two layers › Alpha-lytic protease prodomain-like › 40S ribosomal protein S7-A › 40S ribosomal protein S7-A 0.54 25.0 3.37e-01 77.9% 87.7%
3446682 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.52 48.0 3.66e-01 100.0% 76.9%
3381427 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.52 48.0 3.55e-01 100.0% 69.0%
3692925 5104.1.1.3 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA2 0.51 45.0 4.36e-01 98.5% 94.8%
3402509 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.51 25.0 2.97e-01 97.8% 68.2%