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JQ965645.1__AFL46999.1__SSU5_072__00072

Bact-Vir

JQ965645.1__AFL46999.1__SSU5_072__00072

Identity

Accession:
JQ965645 ↗
Kingdom:
phage

Quality

89.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Salmonella_phage_SSU5

TaxID: 1177632

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 24-81
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jz7A00 3.30.1660.30 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Selenium-binding protein 0.62 47.0 4.30e-01 94.8% 60.5%
2htdB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 50.0 3.98e-01 100.0% 60.5%
1yzhB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 46.0 3.31e-01 100.0% 48.5%
1m6yA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 44.0 3.30e-01 100.0% 86.3%
3nyiA02 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.54 43.0 3.50e-01 98.3% 50.4%
4v1al00 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.54 45.0 3.49e-01 100.0% 41.4%
7ly5B01 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.54 46.0 3.49e-01 100.0% 81.0%
4ombA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.53 42.0 3.16e-01 89.7% 58.4%
3h96C00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 44.0 3.49e-01 100.0% 65.9%
7cayA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.53 45.0 3.86e-01 100.0% 70.0%
2fhqA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 44.0 3.49e-01 100.0% 60.7%
2l48A00 3.30.70.2030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 37.0 3.40e-01 94.8% 54.1%
5c82A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 45.0 3.28e-01 100.0% 54.7%
1wr8A02 3.90.1070.10 Alpha Beta › Alpha-Beta Complex › Hypothetical Protein Ta0175; Chain: A, domain 2 › 0.52 38.0 3.71e-01 100.0% 69.6%
3iylW04 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 40.0 2.82e-01 98.3% 83.3%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3683127 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.59 47.0 4.87e-01 100.0% 98.2%
3250924 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.58 46.0 3.94e-01 94.8% 53.0%
3932808 101.1.2.163 ↗ alpha arrays › HTH › HTH › winged helix domain › PMT2_N 0.57 45.0 3.26e-01 89.7% 55.7%
3990639 209.1.1.0 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like 0.56 48.0 4.09e-01 100.0% 86.0%
3280742 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.56 48.0 3.48e-01 100.0% 61.8%
4343468 2003.1.5.17 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_5 0.55 46.0 3.16e-01 100.0% 73.2%
4344284 246.3.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.55 44.0 2.74e-01 93.1% 93.9%
3685254 2003.1.2.12 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › DAO 0.55 43.0 2.63e-01 87.9% 27.9%
3797564 246.3.1.0 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like 0.54 40.0 2.55e-01 86.2% 54.2%
3285209 306.2.1.0 ↗ a+b two layers › Glucose permease domain IIB-like › arginine repressor C terminal domain-related › C-terminal domain of arginine repressor 0.54 44.0 4.18e-01 100.0% 83.6%
3961843 101.1.2.487 ↗ alpha arrays › HTH › HTH › winged helix domain › Methyltransf_5 0.53 46.0 3.96e-01 100.0% 86.3%
3971438 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.53 43.0 3.09e-01 100.0% 87.0%
None — 0.52 42.0 3.09e-01 100.0% 70.5%
None — 0.52 43.0 3.09e-01 100.0% 84.4%
3603753 3008.1.1.2 ↗ a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DUF5915 0.52 38.0 3.34e-01 79.3% 87.6%
4401955 2003.1.5.17 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_5 0.52 42.0 3.11e-01 100.0% 84.2%
4478130 2003.1.5.17 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_5 0.52 41.0 3.09e-01 100.0% 85.2%
4959918 284.1.2.0 ↗ a+b two layers › FKBP-like › FKBP-like › Conserved carboxy-terminal domain of oxidative-stress-responsive kinase 1-like kinases 0.51 40.0 3.47e-01 91.4% 84.0%
4618987 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.51 40.0 3.36e-01 100.0% 47.2%